Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47224 * 239.99665 * 2 1 3 5 5 C 1.53005 * 109.46990 * 119.99528 * 2 1 3 6 6 H 1.08999 * 109.47236 * 299.99991 * 5 2 1 7 7 N 1.46496 * 109.47115 * 60.00334 * 5 2 1 8 8 S 1.65601 * 119.99915 * 214.72720 * 7 5 2 9 9 O 1.42102 * 106.40158 * 178.81348 * 8 7 5 10 10 O 1.42100 * 106.39893 * 311.72778 * 8 7 5 11 11 C 1.76194 * 107.22092 * 65.27298 * 8 7 5 12 12 C 1.38654 * 119.87485 * 269.72622 * 11 8 7 13 13 C 1.38613 * 120.50117 * 179.71971 * 12 11 8 14 14 C 1.37637 * 120.24820 * 0.55614 * 13 12 11 15 15 C 1.40698 * 119.74370 * 359.72128 * 14 13 12 16 16 C 1.41396 * 120.24389 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99911 * 204.37970 * 16 15 14 18 18 C 1.39949 * 119.99965 * 24.38938 * 16 15 14 19 19 N 1.30821 * 119.99907 * 17.85761 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 197.86574 * 18 16 15 21 21 H 1.48506 * 109.47535 * 59.99594 * 20 18 16 22 22 H 1.48504 * 109.47109 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47225 * 299.99449 * 20 18 16 24 24 C 1.37601 * 119.87707 * 89.99790 * 11 8 7 25 25 C 1.50702 * 109.47163 * 180.02562 * 5 2 1 26 26 O 1.20826 * 120.00287 * 240.00239 * 25 5 2 27 27 O 1.34230 * 119.99918 * 59.99912 * 25 5 2 28 28 H 1.08999 * 109.47123 * 300.00412 * 1 2 3 29 29 H 1.08997 * 109.46834 * 60.00654 * 1 2 3 30 30 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46997 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46752 * 299.99396 * 3 2 1 33 33 H 1.08999 * 109.47477 * 59.99805 * 3 2 1 34 34 H 1.09006 * 109.46917 * 299.99626 * 4 2 1 35 35 H 1.08993 * 109.47082 * 60.00368 * 4 2 1 36 36 H 1.09007 * 109.47100 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00202 * 34.99759 * 7 5 2 38 38 H 1.08000 * 119.74848 * 0.02562 * 12 11 8 39 39 H 1.08001 * 119.87774 * 180.25924 * 13 12 11 40 40 H 1.08000 * 120.13179 * 179.74644 * 14 13 12 41 41 H 0.97001 * 119.99674 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.12815 * 359.97438 * 24 11 8 43 43 H 0.96705 * 116.99651 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2494 6 1 1.6767 -0.2073 2.1393 7 7 1.5517 -2.1024 1.2494 8 16 1.1643 -2.8435 2.6787 9 8 0.7034 -4.1453 2.3437 10 8 2.2530 -2.6077 3.5610 11 6 -0.2183 -1.9847 3.3536 12 6 -0.0149 -0.9120 4.2083 13 6 -1.0931 -0.2235 4.7420 14 6 -2.3796 -0.6060 4.4372 15 6 -2.5980 -1.6967 3.5757 16 6 -3.9153 -2.0984 3.2550 17 1 -4.1095 -3.1143 2.9443 18 6 -4.9673 -1.1793 3.3399 19 7 -4.7141 0.1038 3.3688 20 14 -6.7328 -1.7849 3.4124 21 1 -6.9119 -2.6469 4.6084 22 1 -7.6520 -0.6217 3.4990 23 1 -7.0384 -2.5676 2.1879 24 6 -1.4958 -2.3846 3.0350 25 6 3.5470 -0.7207 1.2497 26 8 4.1516 -1.7668 1.2497 27 8 4.2177 0.4421 1.2499 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7491 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2490 37 1 1.4591 -2.5841 0.4126 38 1 0.9912 -0.6075 4.4560 39 1 -0.9230 0.6132 5.4034 40 1 -3.2183 -0.0708 4.8574 41 1 -5.4433 0.7408 3.4280 42 1 -1.6520 -3.2230 2.3722 43 1 5.1835 0.3917 1.2505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -178.526440 kcal Electronic energy + Delta-G solvation = -29154.061690 eV Core-core repulsion = 25096.725964 eV Total energy + Delta-G solvation = -4057.335726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71274 -39.46127 -38.74280 -38.32134 -37.17863 -36.97971 -35.65968 -34.39915 -31.90456 -31.59770 -28.90620 -28.23065 -27.60265 -27.32279 -23.69166 -23.09156 -22.78280 -20.77629 -20.43466 -19.68161 -19.09121 -18.67111 -17.97755 -17.61150 -17.08574 -16.87283 -16.77706 -16.51717 -16.10527 -15.26143 -15.13797 -15.05249 -14.66429 -14.50653 -14.29349 -14.09545 -13.71008 -13.35209 -13.33601 -13.22348 -13.14050 -13.04531 -13.01974 -12.89649 -12.80802 -12.69717 -12.59085 -12.34655 -12.24437 -12.04273 -11.86361 -11.66192 -11.58226 -11.54914 -11.32080 -11.11946 -10.70099 -9.85532 -9.54686 -8.71666 -6.42913 -0.64433 0.38747 0.86322 1.17162 1.39414 1.47499 1.50969 1.83556 2.15225 2.18867 2.55427 2.73987 3.36755 3.40530 3.54771 3.69201 3.88476 4.14802 4.21725 4.32050 4.41906 4.43491 4.52680 4.80614 4.86162 4.86731 4.92069 4.94780 5.05779 5.06903 5.11125 5.21399 5.23118 5.34469 5.41107 5.47764 5.56567 5.58910 5.63249 5.86263 5.90657 5.95408 6.11823 6.54214 6.81486 6.86081 7.00752 8.25593 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003957 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.894437 B = 7074.713410 C = 7682.779295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.151 4.151 4 C -0.148 4.148 5 C 0.166 3.834 6 H 0.125 0.875 7 N -1.086 6.086 8 S 2.709 3.291 9 O -0.991 6.991 10 O -0.984 6.984 11 C -0.631 4.631 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.138 4.138 15 C 0.068 3.932 16 C -0.497 4.497 17 H 0.077 0.923 18 C 0.043 3.957 19 N -0.815 5.815 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.138 4.138 25 C 0.474 3.526 26 O -0.533 6.533 27 O -0.495 6.495 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.429 0.571 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.292 0.708 42 H 0.109 0.891 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.781 6.618 -8.067 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 C -0.209 4.209 4 C -0.205 4.205 5 C 0.056 3.944 6 H 0.143 0.857 7 N -0.847 5.847 8 S 2.804 3.196 9 O -0.981 6.981 10 O -0.973 6.973 11 C -0.722 4.722 12 C -0.171 4.171 13 C -0.135 4.135 14 C -0.158 4.158 15 C 0.065 3.935 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.174 4.174 19 N -0.441 5.441 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.160 4.160 25 C 0.315 3.685 26 O -0.423 6.423 27 O -0.308 6.308 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.268 0.732 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 9.900 5.946 -7.555 13.800 hybrid contribution -0.858 -0.207 -0.005 0.882 sum 9.042 5.739 -7.560 13.110 Atomic orbital electron populations 1.21870 0.92954 1.02424 1.02715 1.20740 0.96545 0.96828 0.91690 1.22123 1.03348 0.92310 1.03089 1.21986 1.00838 1.00605 0.97118 1.20608 0.86536 0.82806 1.04465 0.85702 1.55178 1.80479 1.23360 1.25674 1.01080 0.73345 0.72605 0.72607 1.93506 1.82842 1.37842 1.83912 1.93511 1.52845 1.85978 1.65001 1.29981 1.14113 1.13356 1.14724 1.20410 0.98809 0.96621 1.01252 1.21100 0.92583 0.99666 1.00181 1.21647 0.96344 0.99465 0.98299 1.17971 0.93186 0.92057 0.90292 1.19821 0.92258 0.98370 1.42104 0.90475 1.26633 1.05431 0.94226 0.91068 1.69789 1.36807 1.02965 1.34508 0.85310 0.75812 0.79027 0.80015 1.18825 1.18894 1.18481 1.20801 0.91220 1.01773 1.02157 1.23906 0.92094 0.81486 0.71032 1.90709 1.70654 1.34643 1.46249 1.84583 1.28088 1.33469 1.84656 0.93294 0.90382 0.92933 0.89374 0.90538 0.92255 0.92369 0.89628 0.92592 0.73240 0.85340 0.85425 0.86811 0.89693 0.87312 0.71357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.32 71.98 0.60 -2.81 16 2 C -0.06 -1.14 0.62 -52.18 -0.03 -1.18 16 3 C -0.15 -2.50 7.95 71.98 0.57 -1.93 16 4 C -0.15 -2.57 8.04 71.98 0.58 -1.99 16 5 C 0.17 4.26 1.98 44.25 0.09 4.34 16 6 H 0.13 3.26 7.27 -2.39 -0.02 3.24 16 7 N -1.09 -32.07 4.16 -172.52 -0.72 -32.78 16 8 S 2.71 103.20 5.65 -56.49 -0.32 102.88 16 9 O -0.99 -42.71 17.27 -128.00 -2.21 -44.92 16 10 O -0.98 -40.85 17.01 -128.00 -2.18 -43.03 16 11 C -0.63 -26.55 5.82 22.22 0.13 -26.42 16 12 C -0.15 -6.05 8.94 22.46 0.20 -5.85 16 13 C -0.12 -4.87 10.02 22.22 0.22 -4.65 16 14 C -0.14 -6.66 8.70 22.73 0.20 -6.46 16 15 C 0.07 3.48 5.58 -21.29 -0.12 3.36 16 16 C -0.50 -25.37 9.05 23.46 0.21 -25.16 16 17 H 0.08 3.86 7.91 -2.91 -0.02 3.83 16 18 C 0.04 2.01 5.14 85.26 0.44 2.45 16 19 N -0.82 -39.01 10.95 21.83 0.24 -38.77 16 20 Si 0.98 36.01 29.59 68.60 2.03 38.04 16 21 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 24 C -0.14 -6.53 9.26 22.73 0.21 -6.32 16 25 C 0.47 11.97 6.37 71.24 0.45 12.42 16 26 O -0.53 -17.10 17.19 21.96 0.38 -16.72 16 27 O -0.49 -8.24 10.34 -51.41 -0.53 -8.77 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 31 H 0.09 1.31 5.32 -2.38 -0.01 1.30 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.04 6.51 -2.38 -0.02 1.02 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 0.95 7.22 -2.38 -0.02 0.94 16 37 H 0.43 10.89 7.03 -96.74 -0.68 10.21 16 38 H 0.13 4.53 7.59 -2.91 -0.02 4.51 16 39 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.11 5.66 6.15 -2.91 -0.02 5.65 16 41 H 0.29 12.60 8.30 -92.71 -0.77 11.83 16 42 H 0.11 5.05 7.60 -2.91 -0.02 5.03 16 43 H 0.42 3.47 9.10 -74.05 -0.67 2.80 16 Total: -1.00 -68.20 365.64 0.15 -68.05 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.29 Total: 36.22 kcal Atomic # 6 Polarization: -63.94 SS G_CDS: 3.75 Total: -60.19 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.48 Total: -71.55 kcal Atomic # 8 Polarization: -108.90 SS G_CDS: -4.54 Total: -113.44 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 103.20 SS G_CDS: -0.32 Total: 102.88 kcal Total: -68.20 0.15 -68.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.477 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds