Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 C 1.53002 * 109.46979 * 119.99209 * 2 1 3 5 5 H 1.08996 * 109.47546 * 300.00395 * 4 2 1 6 6 C 1.53002 * 109.46859 * 60.00947 * 4 2 1 7 7 N 1.46505 * 109.47075 * 184.99922 * 6 4 2 8 8 S 1.65595 * 120.00019 * 164.99778 * 7 6 4 9 9 O 1.42101 * 106.40066 * 178.53965 * 8 7 6 10 10 O 1.42106 * 106.40119 * 311.45760 * 8 7 6 11 11 C 1.76197 * 107.22273 * 64.99580 * 8 7 6 12 12 C 1.38651 * 119.87551 * 269.73260 * 11 8 7 13 13 C 1.38622 * 120.49850 * 179.72144 * 12 11 8 14 14 C 1.37639 * 120.24777 * 0.54460 * 13 12 11 15 15 C 1.40697 * 119.74326 * 359.72933 * 14 13 12 16 16 C 1.41397 * 120.24573 * 180.02562 * 15 14 13 17 17 H 1.07988 * 120.00420 * 204.36591 * 16 15 14 18 18 C 1.39952 * 119.99375 * 24.36280 * 16 15 14 19 19 N 1.30816 * 120.00318 * 17.87865 * 18 16 15 20 20 Si 1.86800 * 119.99475 * 197.87277 * 18 16 15 21 21 H 1.48495 * 109.47565 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46980 * 120.00452 * 20 18 16 23 23 H 1.48506 * 109.47137 * 240.00092 * 20 18 16 24 24 C 1.37602 * 119.87079 * 89.99738 * 11 8 7 25 25 C 1.50703 * 109.47028 * 180.02562 * 4 2 1 26 26 O 1.20826 * 120.00067 * 359.72982 * 25 4 2 27 27 O 1.34224 * 120.00079 * 180.02562 * 25 4 2 28 28 H 1.08995 * 109.47260 * 60.00850 * 1 2 3 29 29 H 1.09008 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47785 * 300.00364 * 1 2 3 31 31 H 1.08999 * 109.47785 * 239.99636 * 2 1 3 32 32 H 1.09001 * 109.47278 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46624 * 299.99422 * 3 2 1 34 34 H 1.08996 * 109.47334 * 59.99770 * 3 2 1 35 35 H 1.09005 * 109.46720 * 304.99029 * 6 4 2 36 36 H 1.08989 * 109.47454 * 64.99276 * 6 4 2 37 37 H 0.96998 * 119.99683 * 344.99493 * 7 6 4 38 38 H 1.07996 * 119.75184 * 359.97438 * 12 11 8 39 39 H 1.07994 * 119.87229 * 180.25500 * 13 12 11 40 40 H 1.07997 * 120.12507 * 179.70835 * 14 13 12 41 41 H 0.97001 * 120.00496 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.13020 * 359.97438 * 24 11 8 43 43 H 0.96707 * 117.00119 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2072 2.1393 6 6 1.5301 -2.1637 1.2494 7 7 1.9176 -2.8186 2.5013 8 16 1.2002 -4.2429 2.9472 9 8 1.8081 -4.6324 4.1711 10 8 -0.2001 -4.0496 2.8018 11 6 1.6615 -5.4551 1.7546 12 6 0.8734 -5.6538 0.6313 13 6 1.2272 -6.6000 -0.3180 14 6 2.3613 -7.3613 -0.1489 15 6 3.1656 -7.1722 0.9899 16 6 4.3332 -7.9481 1.1740 17 1 4.7265 -8.1046 2.1675 18 6 4.9792 -8.5132 0.0686 19 7 4.7355 -8.0595 -1.1339 20 14 6.1896 -9.9154 0.3104 21 1 6.2873 -10.2413 1.7559 22 1 5.7183 -11.1101 -0.4351 23 1 7.5248 -9.5098 -0.1975 24 6 2.7997 -6.2048 1.9443 25 6 3.5469 -0.7205 1.2497 26 8 4.1511 -0.2014 0.3412 27 8 4.2181 -1.3020 2.2562 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.4437 -2.1650 1.1599 36 1 1.9646 -2.7027 0.4077 37 1 2.5944 -2.4178 3.0689 38 1 -0.0208 -5.0641 0.4929 39 1 0.6081 -6.7435 -1.1912 40 1 2.6325 -8.1011 -0.8874 41 1 5.1836 -8.4509 -1.9001 42 1 3.4100 -6.0511 2.8219 43 1 5.1838 -1.2760 2.2128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -187.095214 kcal Electronic energy + Delta-G solvation = -28223.236750 eV Core-core repulsion = 24165.529454 eV Total energy + Delta-G solvation = -4057.707296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63076 -39.43630 -38.34978 -38.00491 -37.20090 -36.87733 -35.67256 -35.16487 -31.90804 -31.57552 -30.27380 -28.17163 -27.34767 -25.28846 -23.65531 -23.08995 -22.78251 -20.93630 -20.43679 -19.64590 -19.09117 -18.43212 -17.92789 -17.72641 -17.50858 -16.83027 -16.56256 -16.47566 -15.94069 -15.40186 -15.28806 -15.06458 -14.96116 -14.69928 -14.30820 -13.75503 -13.70945 -13.44318 -13.30535 -13.17843 -13.11349 -13.06698 -13.03155 -13.02189 -12.83450 -12.79076 -12.60770 -12.58248 -12.21641 -12.09253 -11.69748 -11.59955 -11.54657 -11.36878 -11.15371 -11.13375 -10.46517 -9.84165 -9.55420 -8.74011 -6.45392 -0.47391 0.41758 0.84690 1.17978 1.36535 1.43677 1.51459 2.06630 2.15478 2.16820 2.55508 2.80622 3.41601 3.50390 3.58410 3.67120 3.96936 4.21775 4.29205 4.32454 4.40313 4.47112 4.51978 4.66379 4.73032 4.85136 4.87518 4.89706 4.91283 5.07747 5.08167 5.12186 5.20674 5.31063 5.40293 5.41861 5.51898 5.57411 5.73681 5.89725 5.94592 6.10805 6.16146 6.53119 6.79791 6.85076 6.99515 8.23900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.003605 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.853485 B = 7764.995597 C = 8495.776491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.157 4.157 4 C -0.078 4.078 5 H 0.143 0.857 6 C 0.116 3.884 7 N -1.105 6.105 8 S 2.722 3.278 9 O -0.994 6.994 10 O -0.980 6.980 11 C -0.640 4.640 12 C -0.147 4.147 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.062 3.938 16 C -0.499 4.499 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.981 3.019 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.264 1.264 24 C -0.145 4.145 25 C 0.484 3.516 26 O -0.535 6.535 27 O -0.514 6.514 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.429 0.571 38 H 0.137 0.863 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.291 0.709 42 H 0.109 0.891 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 14.884 1.222 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.214 4.214 4 C -0.099 4.099 5 H 0.160 0.840 6 C -0.009 4.009 7 N -0.869 5.869 8 S 2.814 3.186 9 O -0.985 6.985 10 O -0.970 6.970 11 C -0.729 4.729 12 C -0.167 4.167 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.058 3.942 16 C -0.528 4.528 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.183 1.183 22 H -0.187 1.187 23 H -0.189 1.189 24 C -0.166 4.166 25 C 0.327 3.673 26 O -0.425 6.425 27 O -0.328 6.328 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.268 0.732 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.109 14.795 1.381 15.713 hybrid contribution 2.229 -0.981 -0.599 2.508 sum -2.880 13.814 0.782 14.132 Atomic orbital electron populations 1.21987 0.92437 1.03055 1.03581 1.20987 0.97265 0.96626 0.94918 1.22037 1.02024 0.94612 1.02705 1.21531 0.86464 0.97452 1.04415 0.83968 1.21541 1.02606 0.91313 0.85486 1.55332 1.58295 1.39927 1.33394 1.00734 0.72879 0.72502 0.72469 1.93507 1.78371 1.82867 1.43722 1.93499 1.30725 1.85783 1.86949 1.30298 1.06328 1.19855 1.16400 1.20514 0.99967 1.02279 0.93968 1.21160 0.96915 0.97038 0.99083 1.21645 0.94403 1.00607 0.99557 1.18043 0.93011 0.90971 0.92126 1.19881 1.09039 1.28868 0.95035 0.90436 1.26712 0.98680 0.98421 0.93860 1.69813 1.37908 1.36430 1.00597 0.85168 0.77396 0.77428 0.79838 1.18330 1.18694 1.18915 1.20856 0.97122 0.97825 1.00782 1.23693 0.92167 0.73021 0.78408 1.90664 1.71188 1.43677 1.37015 1.84394 1.28474 1.72269 1.47701 0.91003 0.91748 0.90882 0.91203 0.92410 0.91623 0.91589 0.86613 0.91664 0.73205 0.84479 0.85504 0.87067 0.89795 0.87290 0.71083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.85 71.98 0.64 -1.38 16 2 C -0.08 -1.33 2.15 -10.79 -0.02 -1.35 16 3 C -0.16 -2.54 8.87 71.98 0.64 -1.90 16 4 C -0.08 -1.42 2.03 -11.54 -0.02 -1.44 16 5 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.12 2.60 5.39 86.38 0.47 3.06 16 7 N -1.10 -28.75 5.77 -187.48 -1.08 -29.83 16 8 S 2.72 94.52 5.73 -56.49 -0.32 94.20 16 9 O -0.99 -40.05 17.27 -128.00 -2.21 -42.26 16 10 O -0.98 -35.33 16.73 -128.00 -2.14 -37.47 16 11 C -0.64 -26.93 5.94 22.22 0.13 -26.80 16 12 C -0.15 -5.95 9.53 22.46 0.21 -5.73 16 13 C -0.12 -5.32 10.02 22.22 0.22 -5.10 16 14 C -0.14 -7.16 8.70 22.73 0.20 -6.97 16 15 C 0.06 3.26 5.58 -21.29 -0.12 3.14 16 16 C -0.50 -26.43 9.05 23.46 0.21 -26.22 16 17 H 0.08 4.01 7.91 -2.92 -0.02 3.99 16 18 C 0.04 1.89 5.14 85.26 0.44 2.33 16 19 N -0.82 -41.20 10.95 21.83 0.24 -40.96 16 20 Si 0.98 37.19 29.60 68.60 2.03 39.22 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.14 -7.03 9.26 22.73 0.21 -6.81 16 25 C 0.48 10.65 7.33 71.24 0.52 11.17 16 26 O -0.54 -14.63 14.43 21.96 0.32 -14.31 16 27 O -0.51 -9.68 11.14 -51.35 -0.57 -10.25 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.88 6.32 -2.38 -0.02 0.87 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.06 1.21 5.53 -2.39 -0.01 1.20 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 2.24 5.78 -2.38 -0.01 2.23 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.43 9.89 6.50 -96.75 -0.63 9.26 16 38 H 0.14 4.66 7.59 -2.91 -0.02 4.64 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 41 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 42 H 0.11 5.17 7.60 -2.91 -0.02 5.14 16 43 H 0.43 5.17 9.10 -74.05 -0.67 4.50 16 Total: -1.00 -69.44 366.56 -0.26 -69.69 By element: Atomic # 1 Polarization: 36.20 SS G_CDS: -0.24 Total: 35.96 kcal Atomic # 6 Polarization: -67.72 SS G_CDS: 3.73 Total: -63.99 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.84 Total: -70.79 kcal Atomic # 8 Polarization: -99.69 SS G_CDS: -4.61 Total: -104.30 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 94.52 SS G_CDS: -0.32 Total: 94.20 kcal Total: -69.44 -0.26 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.402 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds