Wall clock time and date at job start Sat Apr 11 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 C 1.52997 * 109.47142 * 120.00666 * 2 1 3 5 5 H 1.08999 * 109.46680 * 299.99892 * 4 2 1 6 6 C 1.52995 * 109.46953 * 180.02562 * 4 2 1 7 7 N 1.46506 * 109.47099 * 174.99597 * 6 4 2 8 8 S 1.65604 * 119.99922 * 164.99716 * 7 6 4 9 9 O 1.42094 * 106.40388 * 311.46032 * 8 7 6 10 10 O 1.42097 * 106.39909 * 178.53987 * 8 7 6 11 11 C 1.76204 * 107.21812 * 65.00263 * 8 7 6 12 12 C 1.38648 * 119.87216 * 269.72724 * 11 8 7 13 13 C 1.38618 * 120.50108 * 179.72383 * 12 11 8 14 14 C 1.37646 * 120.24334 * 0.54526 * 13 12 11 15 15 C 1.40692 * 119.74541 * 359.73073 * 14 13 12 16 16 C 1.41399 * 120.24470 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99599 * 204.37120 * 16 15 14 18 18 C 1.39940 * 119.99870 * 24.36370 * 16 15 14 19 19 N 1.30822 * 120.00180 * 17.87005 * 18 16 15 20 20 Si 1.86800 * 119.99922 * 197.86028 * 18 16 15 21 21 H 1.48509 * 109.46660 * 60.00779 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47424 * 300.00632 * 20 18 16 24 24 C 1.37596 * 119.87513 * 89.99547 * 11 8 7 25 25 C 1.50693 * 109.47366 * 59.99887 * 4 2 1 26 26 O 1.20824 * 120.00026 * 120.00504 * 25 4 2 27 27 O 1.34237 * 119.99813 * 299.99825 * 25 4 2 28 28 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47245 * 299.99789 * 1 2 3 30 30 H 1.09003 * 109.47286 * 59.99961 * 1 2 3 31 31 H 1.09006 * 109.46757 * 240.00663 * 2 1 3 32 32 H 1.09001 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47918 * 299.99956 * 3 2 1 34 34 H 1.08997 * 109.46948 * 60.00600 * 3 2 1 35 35 H 1.09005 * 109.47394 * 54.99622 * 6 4 2 36 36 H 1.09004 * 109.47486 * 294.99489 * 6 4 2 37 37 H 0.96993 * 120.00009 * 345.00068 * 7 6 4 38 38 H 1.08001 * 119.75626 * 359.97438 * 12 11 8 39 39 H 1.07993 * 119.88183 * 180.25547 * 13 12 11 40 40 H 1.07998 * 120.12381 * 179.70769 * 14 13 12 41 41 H 0.96999 * 120.00049 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.13020 * 359.97438 * 24 11 8 43 43 H 0.96703 * 116.99880 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 3.5700 -0.7208 1.2494 7 7 4.0583 -1.3046 2.5012 8 16 5.6405 -1.7753 2.6335 9 8 5.9255 -2.5537 1.4794 10 8 5.8051 -2.2610 3.9587 11 6 6.6291 -0.3219 2.5100 12 6 7.0791 0.1038 1.2696 13 6 7.8528 1.2484 1.1568 14 6 8.1922 1.9693 2.2792 15 6 7.7459 1.5435 3.5436 16 6 8.0878 2.2764 4.7036 17 1 8.1044 1.7869 5.6661 18 6 8.4047 3.6358 4.6042 19 7 8.0581 4.3121 3.5393 20 14 9.3224 4.4848 5.9921 21 1 10.6370 3.8237 6.1934 22 1 9.5341 5.9130 5.6448 23 1 8.5255 4.3925 7.2417 24 6 6.9561 0.3831 3.6455 25 6 1.5377 -2.1421 1.2490 26 8 2.3229 -3.0605 1.2490 27 8 0.2180 -2.3874 1.2491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.9330 0.3031 1.1601 36 1 3.9338 -1.3100 0.4076 37 1 3.4549 -1.4155 3.2525 38 1 6.8216 -0.4583 0.3841 39 1 8.1946 1.5732 0.1852 40 1 8.7990 2.8582 2.1895 41 1 8.2775 5.2545 3.4706 42 1 6.6078 0.0475 4.6111 43 1 -0.0562 -3.3147 1.2494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:06 Heat of formation + Delta-G solvation = -163.258875 kcal Electronic energy + Delta-G solvation = -28105.999876 eV Core-core repulsion = 24049.326202 eV Total energy + Delta-G solvation = -4056.673675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.71720 -37.64615 -37.28885 -36.53938 -36.31204 -35.20681 -34.19692 -33.84962 -30.08032 -29.78446 -29.23593 -27.58278 -25.49682 -24.41810 -21.93341 -21.88236 -20.98771 -20.32973 -18.95338 -18.31484 -17.95084 -17.15883 -16.84155 -16.30759 -15.91737 -15.60131 -15.15067 -14.79446 -14.50679 -14.21006 -14.05547 -13.65784 -13.51073 -13.33476 -13.12688 -12.84138 -12.57544 -12.33232 -12.05610 -11.97844 -11.88835 -11.59862 -11.54870 -11.42583 -11.36730 -11.34995 -10.99726 -10.95486 -10.94680 -10.87523 -10.86548 -10.63649 -10.49338 -9.78803 -9.64514 -9.35211 -9.10306 -8.04240 -7.71184 -6.93931 -4.54387 1.08520 2.09488 2.20302 2.63474 2.83929 2.98703 3.01016 3.08082 3.60256 3.81982 4.25811 4.33581 4.43428 4.48895 4.69118 5.02655 5.06629 5.10856 5.18254 5.35615 5.39660 5.47953 5.56462 5.66442 5.73373 5.80729 5.94591 5.99767 6.07362 6.13711 6.18885 6.21466 6.35954 6.65589 6.75848 6.84730 7.02278 7.19130 7.24101 7.38842 7.72473 7.77729 7.80375 7.93914 8.39564 8.66119 8.71240 10.01442 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003327 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.532677 B = 8413.533382 C = 9266.664881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.083 4.083 5 H 0.117 0.883 6 C 0.131 3.869 7 N -1.116 6.116 8 S 2.693 3.307 9 O -0.970 6.970 10 O -0.974 6.974 11 C -0.633 4.633 12 C -0.150 4.150 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.124 4.124 25 C 0.476 3.524 26 O -0.494 6.494 27 O -0.513 6.513 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.111 0.889 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -3.023 -6.108 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.103 4.103 5 H 0.135 0.865 6 C 0.005 3.995 7 N -0.873 5.873 8 S 2.788 3.212 9 O -0.960 6.960 10 O -0.965 6.965 11 C -0.724 4.724 12 C -0.171 4.171 13 C -0.140 4.140 14 C -0.139 4.139 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.145 4.145 25 C 0.317 3.683 26 O -0.380 6.380 27 O -0.326 6.326 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.244 0.756 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -13.649 -3.491 -6.256 15.415 hybrid contribution 0.078 0.669 0.871 1.101 sum -13.572 -2.822 -5.385 14.871 Atomic orbital electron populations 1.22102 0.93803 1.03658 1.01905 1.21067 0.96963 0.96867 0.95645 1.21972 1.02206 0.94402 1.02583 1.21485 0.96265 0.89787 1.02792 0.86486 1.21284 0.91175 0.99948 0.87131 1.55445 1.29453 1.81227 1.21215 1.01579 0.72134 0.74490 0.72998 1.93512 1.83612 1.67524 1.51329 1.93528 1.85168 1.79539 1.38229 1.29803 1.19872 1.22178 1.00568 1.20093 1.04445 0.98557 0.94048 1.20808 0.99836 0.95668 0.97643 1.21634 1.00063 1.00100 0.92082 1.17676 0.89217 0.90795 0.93459 1.19598 1.40604 0.93816 0.95026 0.89953 1.25919 0.93520 0.97727 0.97037 1.69768 1.34326 1.09774 1.28073 0.86305 0.80860 0.77998 0.81288 1.18675 1.20244 1.18831 1.20786 1.00769 0.97926 0.95037 1.23443 0.79940 0.92692 0.72228 1.90808 1.56590 1.46581 1.44005 1.84649 1.26430 1.35790 1.85683 0.90371 0.92380 0.92538 0.90245 0.91319 0.91944 0.91958 0.89270 0.89451 0.75633 0.87570 0.88393 0.85766 0.90544 0.87073 0.73794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.67 37.16 0.32 -0.82 16 2 C -0.09 -0.72 2.50 -90.62 -0.23 -0.95 16 3 C -0.15 -1.30 8.85 37.16 0.33 -0.97 16 4 C -0.08 -0.83 1.94 -91.78 -0.18 -1.01 16 5 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.13 1.70 4.96 -4.04 -0.02 1.68 16 7 N -1.12 -16.94 5.14 -10.61 -0.05 -16.99 16 8 S 2.69 52.83 5.74 -107.50 -0.62 52.22 16 9 O -0.97 -20.98 16.73 -57.17 -0.96 -21.94 16 10 O -0.97 -21.39 17.27 -57.17 -0.99 -22.38 16 11 C -0.63 -13.80 5.94 -39.66 -0.24 -14.04 16 12 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 13 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 14 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 15 C 0.09 2.35 5.58 -106.83 -0.60 1.76 16 16 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 19 N -0.79 -19.26 10.95 55.55 0.61 -18.65 16 20 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 25 C 0.48 5.22 7.41 36.00 0.27 5.49 16 26 O -0.49 -7.41 16.11 -18.75 -0.30 -7.71 16 27 O -0.51 -3.91 10.34 -39.28 -0.41 -4.32 16 28 H 0.08 0.58 5.32 -51.93 -0.28 0.30 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.64 6.32 -51.93 -0.33 0.31 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.10 6.17 -51.93 -0.32 0.78 16 36 H 0.09 1.22 7.57 -51.93 -0.39 0.83 16 37 H 0.41 5.35 8.64 -34.47 -0.30 5.05 16 38 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 41 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 42 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 43 H 0.40 1.63 9.10 45.56 0.41 2.05 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -33.11 368.34 -9.26 -42.38 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.83 Total: 11.41 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -2.24 Total: -32.42 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.55 Total: -35.64 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -2.65 Total: -56.34 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 52.83 SS G_CDS: -0.62 Total: 52.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.11 -9.26 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.880 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds