Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46882 * 2 1 4 4 C 1.52997 * 109.47142 * 120.00666 * 2 1 3 5 5 H 1.08999 * 109.46680 * 299.99892 * 4 2 1 6 6 C 1.52995 * 109.46953 * 180.02562 * 4 2 1 7 7 N 1.46506 * 109.47099 * 174.99597 * 6 4 2 8 8 S 1.65604 * 119.99922 * 164.99716 * 7 6 4 9 9 O 1.42094 * 106.40388 * 311.46032 * 8 7 6 10 10 O 1.42097 * 106.39909 * 178.53987 * 8 7 6 11 11 C 1.76204 * 107.21812 * 65.00263 * 8 7 6 12 12 C 1.38648 * 119.87216 * 269.72724 * 11 8 7 13 13 C 1.38618 * 120.50108 * 179.72383 * 12 11 8 14 14 C 1.37646 * 120.24334 * 0.54526 * 13 12 11 15 15 C 1.40692 * 119.74541 * 359.73073 * 14 13 12 16 16 C 1.41399 * 120.24470 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99599 * 204.37120 * 16 15 14 18 18 C 1.39940 * 119.99870 * 24.36370 * 16 15 14 19 19 N 1.30822 * 120.00180 * 17.87005 * 18 16 15 20 20 Si 1.86800 * 119.99922 * 197.86028 * 18 16 15 21 21 H 1.48509 * 109.46660 * 60.00779 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47424 * 300.00632 * 20 18 16 24 24 C 1.37596 * 119.87513 * 89.99547 * 11 8 7 25 25 C 1.50693 * 109.47366 * 59.99887 * 4 2 1 26 26 O 1.20824 * 120.00026 * 120.00504 * 25 4 2 27 27 O 1.34237 * 119.99813 * 299.99825 * 25 4 2 28 28 H 1.08998 * 109.46787 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47245 * 299.99789 * 1 2 3 30 30 H 1.09003 * 109.47286 * 59.99961 * 1 2 3 31 31 H 1.09006 * 109.46757 * 240.00663 * 2 1 3 32 32 H 1.09001 * 109.46870 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47918 * 299.99956 * 3 2 1 34 34 H 1.08997 * 109.46948 * 60.00600 * 3 2 1 35 35 H 1.09005 * 109.47394 * 54.99622 * 6 4 2 36 36 H 1.09004 * 109.47486 * 294.99489 * 6 4 2 37 37 H 0.96993 * 120.00009 * 345.00068 * 7 6 4 38 38 H 1.08001 * 119.75626 * 359.97438 * 12 11 8 39 39 H 1.07993 * 119.88183 * 180.25547 * 13 12 11 40 40 H 1.07998 * 120.12381 * 179.70769 * 14 13 12 41 41 H 0.96999 * 120.00049 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.13020 * 359.97438 * 24 11 8 43 43 H 0.96703 * 116.99880 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 3.5700 -0.7208 1.2494 7 7 4.0583 -1.3046 2.5012 8 16 5.6405 -1.7753 2.6335 9 8 5.9255 -2.5537 1.4794 10 8 5.8051 -2.2610 3.9587 11 6 6.6291 -0.3219 2.5100 12 6 7.0791 0.1038 1.2696 13 6 7.8528 1.2484 1.1568 14 6 8.1922 1.9693 2.2792 15 6 7.7459 1.5435 3.5436 16 6 8.0878 2.2764 4.7036 17 1 8.1044 1.7869 5.6661 18 6 8.4047 3.6358 4.6042 19 7 8.0581 4.3121 3.5393 20 14 9.3224 4.4848 5.9921 21 1 10.6370 3.8237 6.1934 22 1 9.5341 5.9130 5.6448 23 1 8.5255 4.3925 7.2417 24 6 6.9561 0.3831 3.6455 25 6 1.5377 -2.1421 1.2490 26 8 2.3229 -3.0605 1.2490 27 8 0.2180 -2.3874 1.2491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.9330 0.3031 1.1601 36 1 3.9338 -1.3100 0.4076 37 1 3.4549 -1.4155 3.2525 38 1 6.8216 -0.4583 0.3841 39 1 8.1946 1.5732 0.1852 40 1 8.7990 2.8582 2.1895 41 1 8.2775 5.2545 3.4706 42 1 6.6078 0.0475 4.6111 43 1 -0.0562 -3.3147 1.2494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -186.514219 kcal Electronic energy + Delta-G solvation = -28107.008304 eV Core-core repulsion = 24049.326202 eV Total energy + Delta-G solvation = -4057.682102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56586 -39.44256 -38.34918 -38.00119 -37.13497 -36.90006 -35.66483 -35.24932 -31.90316 -31.57849 -30.14133 -28.23523 -27.33548 -25.38165 -23.66460 -22.81899 -22.65888 -21.22006 -20.44271 -19.60170 -19.11883 -18.46084 -17.90398 -17.72391 -17.46379 -16.85300 -16.54661 -16.53122 -15.97605 -15.25689 -15.08421 -14.98863 -14.93585 -14.47657 -14.29213 -14.08883 -13.68561 -13.61613 -13.31847 -13.25569 -13.11370 -13.08398 -13.02383 -12.95619 -12.81648 -12.76997 -12.58559 -12.50967 -12.20848 -11.79057 -11.63250 -11.58518 -11.55663 -11.39036 -11.30973 -11.12791 -10.42051 -9.84630 -9.55270 -8.72353 -6.44124 -0.50026 0.40705 0.85783 1.24902 1.38448 1.47189 1.50815 2.09694 2.15530 2.18437 2.57253 2.79584 3.36014 3.50613 3.57758 3.73179 3.99422 4.23994 4.31947 4.37155 4.42092 4.45632 4.48397 4.64285 4.74798 4.85629 4.91638 4.93451 4.96486 5.07951 5.10081 5.19508 5.21448 5.30483 5.41525 5.50313 5.57805 5.61596 5.67998 5.89802 5.94668 6.04620 6.11736 6.53370 6.80500 6.85541 7.05947 8.25247 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003327 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.532677 B = 8413.533382 C = 9266.664881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.156 4.156 4 C -0.080 4.080 5 H 0.137 0.863 6 C 0.122 3.878 7 N -1.103 6.103 8 S 2.718 3.282 9 O -0.987 6.987 10 O -0.999 6.999 11 C -0.635 4.635 12 C -0.148 4.148 13 C -0.119 4.119 14 C -0.140 4.140 15 C 0.065 3.935 16 C -0.500 4.500 17 H 0.077 0.923 18 C 0.041 3.959 19 N -0.818 5.818 20 Si 0.980 3.020 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.260 1.260 24 C -0.145 4.145 25 C 0.484 3.516 26 O -0.540 6.540 27 O -0.499 6.499 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.422 0.578 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.292 0.708 42 H 0.108 0.892 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -2.399 -6.705 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.213 4.213 4 C -0.100 4.100 5 H 0.154 0.846 6 C -0.004 4.004 7 N -0.864 5.864 8 S 2.811 3.189 9 O -0.977 6.977 10 O -0.990 6.990 11 C -0.724 4.724 12 C -0.169 4.169 13 C -0.138 4.138 14 C -0.159 4.159 15 C 0.062 3.938 16 C -0.529 4.529 17 H 0.095 0.905 18 C -0.175 4.175 19 N -0.443 5.443 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.184 1.184 24 C -0.167 4.167 25 C 0.327 3.673 26 O -0.430 6.430 27 O -0.313 6.313 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.258 0.742 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -15.132 -2.857 -6.862 16.859 hybrid contribution 0.384 0.407 0.945 1.098 sum -14.748 -2.450 -5.916 16.078 Atomic orbital electron populations 1.22070 0.92558 1.03829 1.02623 1.21057 0.97849 0.96501 0.94608 1.21983 1.01393 0.94551 1.03334 1.21505 0.93994 0.89930 1.04615 0.84569 1.21513 0.93550 0.99821 0.85522 1.55065 1.27678 1.81041 1.22649 1.00740 0.72719 0.73494 0.71925 1.93488 1.84546 1.67764 1.51911 1.93486 1.86064 1.79921 1.39511 1.30152 1.19745 1.22388 1.00137 1.20453 1.03377 0.98307 0.94739 1.21135 0.99076 0.95320 0.98275 1.21650 1.01051 1.00539 0.92697 1.18013 0.89939 0.91691 0.94198 1.19833 1.42915 0.95128 0.94992 0.90474 1.26677 0.93600 0.97679 0.99541 1.69792 1.34539 1.10448 1.29525 0.85269 0.79160 0.77315 0.78147 1.18775 1.18780 1.18434 1.20842 1.01624 0.98411 0.95777 1.23528 0.80444 0.92420 0.70930 1.90804 1.57865 1.47869 1.46419 1.84603 1.24430 1.37510 1.84729 0.90427 0.91944 0.91598 0.90331 0.92585 0.90843 0.91639 0.88579 0.90383 0.74191 0.85149 0.85355 0.86770 0.89663 0.87358 0.71695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.67 71.98 0.62 -1.18 16 2 C -0.08 -1.18 2.50 -10.79 -0.03 -1.20 16 3 C -0.16 -2.31 8.85 71.98 0.64 -1.67 16 4 C -0.08 -1.44 1.94 -11.54 -0.02 -1.47 16 5 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 6 C 0.12 3.02 4.96 86.38 0.43 3.45 16 7 N -1.10 -32.61 5.14 -187.48 -0.96 -33.57 16 8 S 2.72 106.07 5.74 -56.49 -0.32 105.74 16 9 O -0.99 -42.15 16.73 -128.00 -2.14 -44.29 16 10 O -1.00 -44.15 17.27 -128.00 -2.21 -46.36 16 11 C -0.63 -27.75 5.94 22.22 0.13 -27.62 16 12 C -0.15 -6.21 9.53 22.46 0.21 -5.99 16 13 C -0.12 -5.16 10.02 22.22 0.22 -4.94 16 14 C -0.14 -6.96 8.70 22.73 0.20 -6.76 16 15 C 0.06 3.41 5.58 -21.29 -0.12 3.30 16 16 C -0.50 -26.24 9.05 23.46 0.21 -26.03 16 17 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 18 C 0.04 1.98 5.14 85.26 0.44 2.42 16 19 N -0.82 -39.97 10.95 21.82 0.24 -39.74 16 20 Si 0.98 36.63 29.60 68.60 2.03 38.66 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 C -0.15 -7.14 9.26 22.73 0.21 -6.93 16 25 C 0.48 9.75 7.41 71.23 0.53 10.28 16 26 O -0.54 -15.68 16.11 21.97 0.35 -15.33 16 27 O -0.50 -6.33 10.34 -51.49 -0.53 -6.86 16 28 H 0.08 0.92 5.32 -2.39 -0.01 0.91 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 0.97 6.32 -2.39 -0.02 0.96 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 2.27 6.17 -2.38 -0.01 2.25 16 36 H 0.08 2.11 7.57 -2.39 -0.02 2.09 16 37 H 0.42 10.57 8.64 -96.75 -0.84 9.74 16 38 H 0.13 4.80 7.59 -2.91 -0.02 4.77 16 39 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 41 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 42 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 43 H 0.42 2.35 9.10 -74.05 -0.67 1.67 16 Total: -1.00 -71.82 368.34 -0.32 -72.14 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.44 Total: 33.96 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 3.68 Total: -64.34 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.73 Total: -73.31 kcal Atomic # 8 Polarization: -108.31 SS G_CDS: -4.53 Total: -112.84 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 16 Polarization: 106.07 SS G_CDS: -0.32 Total: 105.74 kcal Total: -71.82 -0.32 -72.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.373 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds