Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 C 1.53009 * 109.46794 * 120.00040 * 2 1 3 5 5 N 1.46505 * 109.46667 * 299.99534 * 4 2 1 6 6 S 1.65598 * 119.99364 * 164.99946 * 5 4 2 7 7 O 1.42098 * 106.40579 * 311.46117 * 6 5 4 8 8 O 1.42104 * 106.40061 * 178.54303 * 6 5 4 9 9 C 1.76195 * 107.21796 * 65.00334 * 6 5 4 10 10 C 1.38662 * 119.87952 * 270.24723 * 9 6 5 11 11 C 1.38613 * 120.50337 * 180.30428 * 10 9 6 12 12 C 1.37635 * 120.24644 * 359.44170 * 11 10 9 13 13 C 1.40700 * 119.74734 * 0.27966 * 12 11 10 14 14 C 1.41393 * 120.24808 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00329 * 204.39358 * 14 13 12 16 16 C 1.39942 * 119.99793 * 24.38823 * 14 13 12 17 17 N 1.30830 * 119.99921 * 17.86190 * 16 14 13 18 18 Si 1.86807 * 120.00314 * 197.85679 * 16 14 13 19 19 H 1.48504 * 109.46865 * 90.00477 * 18 16 14 20 20 H 1.48493 * 109.47164 * 210.00257 * 18 16 14 21 21 H 1.48499 * 109.47067 * 330.00626 * 18 16 14 22 22 C 1.37597 * 119.87685 * 90.00071 * 9 6 5 23 23 C 1.53001 * 109.47351 * 239.99644 * 2 1 3 24 24 C 1.50696 * 109.46833 * 60.00192 * 23 2 1 25 25 O 1.20819 * 120.00555 * 0.02562 * 24 23 2 26 26 O 1.34239 * 119.99795 * 180.02562 * 24 23 2 27 27 H 1.08993 * 109.47453 * 300.00606 * 1 2 3 28 28 H 1.09008 * 109.46756 * 60.00388 * 1 2 3 29 29 H 1.08995 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47056 * 299.99524 * 3 2 1 32 32 H 1.08999 * 109.47150 * 60.00017 * 3 2 1 33 33 H 1.08994 * 109.47041 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46964 * 59.99720 * 4 2 1 35 35 H 0.97000 * 120.00105 * 345.00850 * 5 4 2 36 36 H 1.07998 * 119.74547 * 0.04857 * 10 9 6 37 37 H 1.07991 * 119.87429 * 179.72331 * 11 10 9 38 38 H 1.07998 * 120.12988 * 180.25464 * 12 11 10 39 39 H 0.97008 * 119.99884 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.12756 * 359.97438 * 22 9 6 41 41 H 1.08994 * 109.47287 * 180.02562 * 23 2 1 42 42 H 1.09001 * 109.46825 * 300.00572 * 23 2 1 43 43 H 0.96700 * 117.00035 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5516 -0.0305 2.4455 6 16 1.6254 -0.7781 3.9213 7 8 1.0836 -2.0791 3.7397 8 8 1.1153 0.1512 4.8677 9 6 3.3299 -0.9986 4.3095 10 6 3.9842 -2.1556 3.9146 11 6 5.3232 -2.3453 4.2185 12 6 6.0214 -1.3796 4.9072 13 6 5.3693 -0.1990 5.3080 14 6 6.0762 0.7998 6.0164 15 1 5.5429 1.4902 6.6529 16 6 7.4670 0.8936 5.8928 17 7 8.0748 0.3170 4.8879 18 14 8.4558 1.8420 7.1626 19 1 8.8640 0.9256 8.2575 20 1 9.6656 2.4156 6.5203 21 1 7.6238 2.9388 7.7195 22 6 4.0080 -0.0199 4.9990 23 6 2.0400 -0.7213 -1.2492 24 6 1.5377 -0.0109 -2.4796 25 8 0.8435 0.9717 -2.3689 26 8 1.8617 -0.4699 -3.6988 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7217 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 1.1849 0.8646 2.3729 36 1 3.4453 -2.9165 3.3696 37 1 5.8216 -3.2523 3.9099 38 1 7.0656 -1.5276 5.1395 39 1 9.0388 0.3823 4.8020 40 1 3.4977 0.8825 5.3018 41 1 3.1300 -0.7217 -1.2489 42 1 1.6766 -1.7490 -1.2491 43 1 1.5163 0.0193 -4.4581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -159.718263 kcal Electronic energy + Delta-G solvation = -27862.071860 eV Core-core repulsion = 23805.551718 eV Total energy + Delta-G solvation = -4056.520142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84000 -38.08036 -37.64845 -36.64489 -36.21516 -35.29651 -33.86620 -33.16871 -30.09332 -29.80412 -28.79708 -27.31345 -26.03727 -25.48997 -22.21920 -21.90355 -21.00643 -19.32487 -19.01892 -18.36639 -17.98218 -17.00218 -16.78912 -16.23440 -15.94902 -15.65668 -15.21593 -14.91465 -14.65154 -14.40194 -14.15327 -13.71757 -13.47788 -13.35021 -13.12003 -12.88860 -12.59432 -12.33564 -11.92185 -11.88976 -11.77082 -11.61229 -11.52833 -11.40921 -11.39020 -11.27127 -11.15736 -11.04436 -11.01200 -10.95374 -10.88856 -10.61705 -10.18206 -9.79779 -9.66806 -9.37392 -9.13635 -8.05578 -7.72420 -6.94812 -4.55379 1.03134 1.96103 2.18259 2.61568 2.78203 2.98918 3.03092 3.05594 3.59654 3.81572 4.24035 4.36477 4.43755 4.59865 4.64543 5.03151 5.06310 5.23058 5.27669 5.31985 5.38469 5.53544 5.67674 5.79362 5.82137 5.94051 6.00789 6.01279 6.05075 6.15849 6.22655 6.31400 6.49793 6.64209 6.74654 6.83366 7.01515 7.18555 7.23705 7.36967 7.66313 7.70992 7.79606 7.92790 8.38837 8.65244 8.70175 10.00557 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.003145 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.490784 B = 8901.438593 C = 9868.182186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.056 4.056 3 C -0.158 4.158 4 C 0.130 3.870 5 N -1.118 6.118 6 S 2.690 3.310 7 O -0.975 6.975 8 O -0.973 6.973 9 C -0.631 4.631 10 C -0.150 4.150 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.091 3.909 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.794 5.794 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 C -0.123 4.123 23 C -0.108 4.108 24 C 0.481 3.519 25 O -0.505 6.505 26 O -0.520 6.520 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -1.070 -13.556 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.058 4.058 3 C -0.215 4.215 4 C 0.003 3.997 5 N -0.877 5.877 6 S 2.786 3.214 7 O -0.965 6.965 8 O -0.964 6.964 9 C -0.723 4.723 10 C -0.171 4.171 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.088 3.912 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.419 5.419 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.144 4.144 23 C -0.146 4.146 24 C 0.324 3.676 25 O -0.394 6.394 26 O -0.332 6.332 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.249 0.751 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.586 -1.467 -12.780 14.934 hybrid contribution 1.115 1.140 -0.146 1.601 sum -6.470 -0.327 -12.927 14.459 Atomic orbital electron populations 1.22137 0.93413 1.02211 1.03624 1.20531 0.97073 0.96323 0.91864 1.22150 1.01116 0.94712 1.03566 1.21249 0.99227 0.95809 0.83419 1.55553 1.78994 1.29989 1.23144 1.01609 0.75042 0.72955 0.71803 1.93506 1.77863 1.39617 1.85560 1.93540 1.79583 1.63935 1.59303 1.29744 1.22817 1.04118 1.15625 1.20075 0.95121 0.96310 1.05608 1.20803 0.94121 0.98492 1.00578 1.21636 1.00291 0.92479 0.99470 1.17686 0.90824 0.92238 0.90455 1.19637 0.91618 1.13649 1.24045 0.89897 1.25931 0.98444 0.94912 0.94989 1.69782 1.11480 1.35690 1.24952 0.86242 0.78984 0.80247 0.80929 1.19148 1.20215 1.18420 1.20783 0.95894 0.96910 1.00852 1.21446 1.03844 1.00806 0.88511 1.23481 0.76941 0.82493 0.84641 1.90625 1.35798 1.26203 1.86754 1.84561 1.72453 1.59113 1.17033 0.92105 0.90254 0.92737 0.92396 0.90163 0.92149 0.90867 0.90122 0.75133 0.87611 0.88415 0.85776 0.90594 0.87081 0.86941 0.87101 0.73292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.01 37.16 0.30 -1.34 16 2 C -0.06 -0.57 0.53 -154.51 -0.08 -0.65 16 3 C -0.16 -1.72 8.01 37.16 0.30 -1.42 16 4 C 0.13 1.55 5.11 -4.03 -0.02 1.53 16 5 N -1.12 -15.61 5.33 -10.61 -0.06 -15.66 16 6 S 2.69 49.06 5.73 -107.50 -0.62 48.45 16 7 O -0.98 -19.23 16.74 -57.17 -0.96 -20.18 16 8 O -0.97 -20.21 17.27 -57.17 -0.99 -21.20 16 9 C -0.63 -13.38 5.94 -39.66 -0.24 -13.61 16 10 C -0.15 -3.13 9.53 -39.29 -0.37 -3.50 16 11 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 12 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 13 C 0.09 2.32 5.58 -106.82 -0.60 1.73 16 14 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.08 1.79 5.14 -17.34 -0.09 1.71 16 17 N -0.79 -19.27 10.95 55.55 0.61 -18.67 16 18 Si 0.91 17.89 29.60 -169.99 -5.03 12.86 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 23 C -0.11 -0.87 4.88 -27.88 -0.14 -1.01 16 24 C 0.48 4.25 7.74 36.00 0.28 4.53 16 25 O -0.51 -5.65 12.11 -18.74 -0.23 -5.87 16 26 O -0.52 -3.55 13.42 -39.28 -0.53 -4.08 16 27 H 0.06 0.65 7.19 -51.93 -0.37 0.27 16 28 H 0.08 0.87 5.52 -51.92 -0.29 0.58 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.91 5.52 -51.93 -0.29 0.62 16 32 H 0.06 0.65 6.60 -51.93 -0.34 0.31 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.93 7.75 -51.93 -0.40 0.52 16 35 H 0.41 5.08 6.47 -34.47 -0.22 4.86 16 36 H 0.11 1.96 7.61 -52.49 -0.40 1.56 16 37 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.12 3.09 6.15 -52.49 -0.32 2.76 16 39 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 40 H 0.11 2.53 7.60 -52.48 -0.40 2.13 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.41 1.17 9.10 45.56 0.41 1.58 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.13 364.47 -9.11 -41.23 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.71 Total: 11.21 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -2.10 Total: -33.58 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.55 Total: -34.33 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -2.70 Total: -51.33 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -0.62 Total: 48.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.13 -9.11 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.485 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds