Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 C 1.53009 * 109.46794 * 120.00040 * 2 1 3 5 5 N 1.46505 * 109.46667 * 299.99534 * 4 2 1 6 6 S 1.65598 * 119.99364 * 164.99946 * 5 4 2 7 7 O 1.42098 * 106.40579 * 311.46117 * 6 5 4 8 8 O 1.42104 * 106.40061 * 178.54303 * 6 5 4 9 9 C 1.76195 * 107.21796 * 65.00334 * 6 5 4 10 10 C 1.38662 * 119.87952 * 270.24723 * 9 6 5 11 11 C 1.38613 * 120.50337 * 180.30428 * 10 9 6 12 12 C 1.37635 * 120.24644 * 359.44170 * 11 10 9 13 13 C 1.40700 * 119.74734 * 0.27966 * 12 11 10 14 14 C 1.41393 * 120.24808 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00329 * 204.39358 * 14 13 12 16 16 C 1.39942 * 119.99793 * 24.38823 * 14 13 12 17 17 N 1.30830 * 119.99921 * 17.86190 * 16 14 13 18 18 Si 1.86807 * 120.00314 * 197.85679 * 16 14 13 19 19 H 1.48504 * 109.46865 * 90.00477 * 18 16 14 20 20 H 1.48493 * 109.47164 * 210.00257 * 18 16 14 21 21 H 1.48499 * 109.47067 * 330.00626 * 18 16 14 22 22 C 1.37597 * 119.87685 * 90.00071 * 9 6 5 23 23 C 1.53001 * 109.47351 * 239.99644 * 2 1 3 24 24 C 1.50696 * 109.46833 * 60.00192 * 23 2 1 25 25 O 1.20819 * 120.00555 * 0.02562 * 24 23 2 26 26 O 1.34239 * 119.99795 * 180.02562 * 24 23 2 27 27 H 1.08993 * 109.47453 * 300.00606 * 1 2 3 28 28 H 1.09008 * 109.46756 * 60.00388 * 1 2 3 29 29 H 1.08995 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47056 * 299.99524 * 3 2 1 32 32 H 1.08999 * 109.47150 * 60.00017 * 3 2 1 33 33 H 1.08994 * 109.47041 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46964 * 59.99720 * 4 2 1 35 35 H 0.97000 * 120.00105 * 345.00850 * 5 4 2 36 36 H 1.07998 * 119.74547 * 0.04857 * 10 9 6 37 37 H 1.07991 * 119.87429 * 179.72331 * 11 10 9 38 38 H 1.07998 * 120.12988 * 180.25464 * 12 11 10 39 39 H 0.97008 * 119.99884 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.12756 * 359.97438 * 22 9 6 41 41 H 1.08994 * 109.47287 * 180.02562 * 23 2 1 42 42 H 1.09001 * 109.46825 * 300.00572 * 23 2 1 43 43 H 0.96700 * 117.00035 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5516 -0.0305 2.4455 6 16 1.6254 -0.7781 3.9213 7 8 1.0836 -2.0791 3.7397 8 8 1.1153 0.1512 4.8677 9 6 3.3299 -0.9986 4.3095 10 6 3.9842 -2.1556 3.9146 11 6 5.3232 -2.3453 4.2185 12 6 6.0214 -1.3796 4.9072 13 6 5.3693 -0.1990 5.3080 14 6 6.0762 0.7998 6.0164 15 1 5.5429 1.4902 6.6529 16 6 7.4670 0.8936 5.8928 17 7 8.0748 0.3170 4.8879 18 14 8.4558 1.8420 7.1626 19 1 8.8640 0.9256 8.2575 20 1 9.6656 2.4156 6.5203 21 1 7.6238 2.9388 7.7195 22 6 4.0080 -0.0199 4.9990 23 6 2.0400 -0.7213 -1.2492 24 6 1.5377 -0.0109 -2.4796 25 8 0.8435 0.9717 -2.3689 26 8 1.8617 -0.4699 -3.6988 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7217 1.2491 34 1 1.6765 -1.7489 1.2493 35 1 1.1849 0.8646 2.3729 36 1 3.4453 -2.9165 3.3696 37 1 5.8216 -3.2523 3.9099 38 1 7.0656 -1.5276 5.1395 39 1 9.0388 0.3823 4.8020 40 1 3.4977 0.8825 5.3018 41 1 3.1300 -0.7217 -1.2489 42 1 1.6766 -1.7490 -1.2491 43 1 1.5163 0.0193 -4.4581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -182.063723 kcal Electronic energy + Delta-G solvation = -27863.040832 eV Core-core repulsion = 23805.551718 eV Total energy + Delta-G solvation = -4057.489114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52671 -39.42186 -38.90585 -38.18929 -36.91896 -36.86823 -35.65130 -34.20717 -31.88696 -31.55570 -29.51224 -28.15084 -27.34765 -26.98729 -23.63634 -22.91839 -22.75568 -20.61706 -20.07204 -19.60388 -19.04138 -18.34435 -17.71194 -17.60548 -16.95592 -16.88914 -16.75284 -16.49917 -15.77323 -15.68296 -15.19145 -15.07764 -15.00988 -14.48567 -14.28181 -13.97730 -13.66885 -13.64034 -13.29248 -13.18576 -13.06509 -13.05912 -13.03284 -12.96811 -12.78112 -12.63021 -12.57983 -12.22571 -12.18288 -11.91088 -11.82876 -11.76648 -11.52886 -11.31251 -11.13687 -10.96667 -10.37556 -9.81915 -9.53498 -8.72285 -6.43719 -0.45490 0.43665 0.86858 1.31686 1.37663 1.46754 1.49992 2.09436 2.18022 2.32724 2.57847 2.81829 3.48258 3.55102 3.63336 3.82141 3.88173 4.28843 4.33940 4.47390 4.50871 4.58393 4.61158 4.69057 4.82385 4.86138 4.88426 4.93071 4.94005 5.09003 5.10631 5.14495 5.21846 5.27418 5.40342 5.43720 5.47671 5.59614 5.85718 5.91669 5.96282 6.10528 6.13971 6.54838 6.81415 6.86909 7.11629 8.25381 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012885 B = 0.003145 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.490784 B = 8901.438593 C = 9868.182186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.049 4.049 3 C -0.159 4.159 4 C 0.120 3.880 5 N -1.104 6.104 6 S 2.722 3.278 7 O -0.983 6.983 8 O -0.999 6.999 9 C -0.637 4.637 10 C -0.144 4.144 11 C -0.122 4.122 12 C -0.141 4.141 13 C 0.062 3.938 14 C -0.500 4.500 15 H 0.075 0.925 16 C 0.040 3.960 17 N -0.820 5.820 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.261 1.261 22 C -0.145 4.145 23 C -0.110 4.110 24 C 0.485 3.515 25 O -0.534 6.534 26 O -0.517 6.517 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.423 0.577 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.292 0.708 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -2.043 -14.877 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.051 4.051 3 C -0.216 4.216 4 C -0.006 4.006 5 N -0.867 5.867 6 S 2.814 3.186 7 O -0.973 6.973 8 O -0.990 6.990 9 C -0.726 4.726 10 C -0.164 4.164 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.059 3.941 14 C -0.529 4.529 15 H 0.094 0.906 16 C -0.176 4.176 17 N -0.445 5.445 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.185 1.185 22 C -0.167 4.167 23 C -0.148 4.148 24 C 0.330 3.670 25 O -0.425 6.425 26 O -0.331 6.331 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.260 0.740 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.679 -2.456 -14.121 16.260 hybrid contribution 1.045 1.373 0.099 1.729 sum -6.634 -1.083 -14.021 15.549 Atomic orbital electron populations 1.22132 0.93556 1.02615 1.03097 1.20433 0.96871 0.95742 0.92054 1.22147 1.00964 0.95389 1.03108 1.21532 0.99512 0.96509 0.83029 1.55220 1.78625 1.30569 1.22311 1.00699 0.73335 0.72466 0.72094 1.93492 1.77312 1.40451 1.86016 1.93501 1.79536 1.64602 1.61337 1.30239 1.24587 1.03496 1.14275 1.20501 0.94929 0.96508 1.04492 1.21154 0.94667 0.98854 0.99399 1.21645 1.00093 0.93231 1.01096 1.18025 0.91914 0.92923 0.91224 1.19844 0.92994 1.14617 1.25477 0.90645 1.26678 0.98737 0.95684 0.96498 1.69808 1.12183 1.36527 1.26000 0.85218 0.77546 0.78785 0.78317 1.18683 1.18945 1.18535 1.20835 0.95743 0.97838 1.02236 1.21479 1.04664 1.01458 0.87166 1.23539 0.76264 0.81926 0.85313 1.90625 1.37208 1.27471 1.87211 1.84517 1.72199 1.59186 1.17150 0.92701 0.90763 0.91845 0.92568 0.90622 0.92644 0.90687 0.88829 0.73981 0.84526 0.85383 0.86999 0.89766 0.87561 0.85626 0.84942 0.71292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.01 71.98 0.58 -2.41 16 2 C -0.05 -0.90 0.53 -52.18 -0.03 -0.93 16 3 C -0.16 -3.28 8.01 71.98 0.58 -2.71 16 4 C 0.12 2.59 5.11 86.38 0.44 3.03 16 5 N -1.10 -29.10 5.33 -187.48 -1.00 -30.09 16 6 S 2.72 95.72 5.73 -56.49 -0.32 95.40 16 7 O -0.98 -36.39 16.74 -128.00 -2.14 -38.53 16 8 O -1.00 -41.12 17.27 -128.00 -2.21 -43.33 16 9 C -0.64 -26.58 5.94 22.22 0.13 -26.45 16 10 C -0.14 -5.72 9.53 22.46 0.21 -5.50 16 11 C -0.12 -5.15 10.02 22.22 0.22 -4.93 16 12 C -0.14 -6.97 8.70 22.73 0.20 -6.78 16 13 C 0.06 3.27 5.58 -21.29 -0.12 3.15 16 14 C -0.50 -26.37 9.05 23.46 0.21 -26.16 16 15 H 0.08 3.91 7.91 -2.91 -0.02 3.88 16 16 C 0.04 1.93 5.14 85.25 0.44 2.36 16 17 N -0.82 -40.43 10.95 21.83 0.24 -40.19 16 18 Si 0.98 37.02 29.60 68.60 2.03 39.05 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 C -0.15 -7.02 9.26 22.73 0.21 -6.81 16 23 C -0.11 -1.48 4.88 29.85 0.15 -1.34 16 24 C 0.49 7.56 7.74 71.23 0.55 8.11 16 25 O -0.53 -11.26 12.11 21.98 0.27 -10.99 16 26 O -0.52 -5.82 13.42 -51.51 -0.69 -6.51 16 27 H 0.05 1.09 7.19 -2.39 -0.02 1.07 16 28 H 0.07 1.53 5.52 -2.38 -0.01 1.52 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.67 5.52 -2.39 -0.01 1.65 16 32 H 0.05 1.16 6.60 -2.39 -0.02 1.15 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.82 7.75 -2.39 -0.02 1.81 16 35 H 0.42 9.90 6.47 -96.74 -0.63 9.27 16 36 H 0.14 4.57 7.61 -2.91 -0.02 4.55 16 37 H 0.13 4.54 8.06 -2.92 -0.02 4.51 16 38 H 0.11 5.72 6.15 -2.91 -0.02 5.70 16 39 H 0.29 12.91 8.30 -92.70 -0.77 12.14 16 40 H 0.11 5.06 7.60 -2.91 -0.02 5.04 16 41 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.43 1.50 9.10 -74.06 -0.67 0.83 16 Total: -1.00 -69.47 364.47 -0.29 -69.77 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.23 Total: 32.80 kcal Atomic # 6 Polarization: -71.13 SS G_CDS: 3.77 Total: -67.36 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -0.76 Total: -70.29 kcal Atomic # 8 Polarization: -94.59 SS G_CDS: -4.78 Total: -99.37 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 16 Polarization: 95.72 SS G_CDS: -0.32 Total: 95.40 kcal Total: -69.47 -0.29 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.299 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds