Wall clock time and date at job start Sat Apr 11 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 C 1.53000 * 109.46973 * 119.99699 * 2 1 3 5 5 H 1.09000 * 109.47248 * 301.83577 * 4 2 1 6 6 C 1.53006 * 109.47279 * 61.83805 * 4 2 1 7 7 C 1.50697 * 109.47407 * 185.00194 * 6 4 2 8 8 O 1.20830 * 119.99491 * 359.97438 * 7 6 4 9 9 O 1.34224 * 119.99937 * 179.72518 * 7 6 4 10 10 N 1.46493 * 109.47210 * 181.83396 * 4 2 1 11 11 S 1.65605 * 119.99951 * 101.10747 * 10 4 2 12 12 O 1.42101 * 106.40401 * 178.99226 * 11 10 4 13 13 O 1.42097 * 106.40093 * 311.91382 * 11 10 4 14 14 C 1.76198 * 107.21692 * 65.45119 * 11 10 4 15 15 C 1.38650 * 119.87779 * 269.72902 * 14 11 10 16 16 C 1.38620 * 120.50242 * 179.72270 * 15 14 11 17 17 C 1.37633 * 120.24755 * 0.55389 * 16 15 14 18 18 C 1.40702 * 119.74404 * 359.72369 * 17 16 15 19 19 C 1.41392 * 120.24406 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00277 * 205.34553 * 19 18 17 21 21 C 1.39946 * 120.00200 * 25.34739 * 19 18 17 22 22 N 1.30819 * 119.99981 * 14.86895 * 21 19 18 23 23 Si 1.86805 * 120.00005 * 194.87020 * 21 19 18 24 24 H 1.48500 * 109.47033 * 60.00022 * 23 21 19 25 25 H 1.48500 * 109.46778 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47155 * 299.99558 * 23 21 19 27 27 C 1.37602 * 119.87214 * 90.00341 * 14 11 10 28 28 H 1.08994 * 109.47543 * 300.00547 * 1 2 3 29 29 H 1.09005 * 109.47010 * 60.00357 * 1 2 3 30 30 H 1.09006 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47220 * 239.99429 * 2 1 3 32 32 H 1.09000 * 109.47105 * 185.10717 * 3 2 1 33 33 H 1.09004 * 109.46789 * 305.10131 * 3 2 1 34 34 H 1.08992 * 109.47379 * 65.10434 * 3 2 1 35 35 H 1.09003 * 109.47178 * 64.99692 * 6 4 2 36 36 H 1.09008 * 109.46896 * 304.99772 * 6 4 2 37 37 H 0.96709 * 116.99941 * 180.27339 * 9 7 6 38 38 H 0.97006 * 120.00706 * 281.10799 * 10 4 2 39 39 H 1.07999 * 119.75265 * 0.02562 * 15 14 11 40 40 H 1.07997 * 119.87692 * 180.25349 * 16 15 14 41 41 H 1.07998 * 120.13492 * 179.74951 * 17 16 15 42 42 H 0.96994 * 120.00160 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.12840 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6500 -0.2267 2.1389 6 6 1.5680 -2.1765 1.2265 7 6 1.9648 -2.8535 2.5130 8 8 2.5641 -2.2356 3.3610 9 8 1.6482 -4.1415 2.7189 10 7 3.5042 -0.6831 1.2716 11 16 4.2894 0.4085 2.2383 12 8 5.6798 0.1794 2.0552 13 8 3.6719 1.6670 2.0061 14 6 3.9301 -0.0213 3.9089 15 6 2.8267 0.5302 4.5419 16 6 2.5287 0.1968 5.8540 17 6 3.3337 -0.6786 6.5469 18 6 4.4594 -1.2399 5.9164 19 6 5.2933 -2.1408 6.6181 20 1 6.3280 -2.2548 6.3303 21 6 4.7779 -2.8848 7.6855 22 7 3.4840 -2.9754 7.8552 23 14 5.9378 -3.7484 8.8681 24 1 6.8162 -2.7450 9.5212 25 1 5.1478 -4.4625 9.9032 26 1 6.7711 -4.7239 8.1203 27 6 4.7489 -0.8986 4.5821 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1261 1.4438 -0.0915 33 1 1.6039 1.9820 -0.8408 34 1 1.7533 1.9292 0.9321 35 1 2.0292 -2.6949 0.3858 36 1 0.4835 -2.2051 1.1203 37 1 1.9204 -4.5313 3.5611 38 1 4.0140 -1.2971 0.7202 39 1 2.1918 1.2211 4.0072 40 1 1.6644 0.6292 6.3360 41 1 3.1021 -0.9339 7.5703 42 1 3.1268 -3.4907 8.5952 43 1 5.6102 -1.3239 4.0884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:10 Heat of formation + Delta-G solvation = -177.862624 kcal Electronic energy + Delta-G solvation = -29528.868098 eV Core-core repulsion = 25471.561157 eV Total energy + Delta-G solvation = -4057.306941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07577 -39.29605 -38.86954 -37.99595 -36.85457 -36.66920 -35.56597 -33.80350 -31.79249 -31.44997 -31.36480 -27.62714 -27.25626 -25.56426 -23.53748 -22.71231 -22.02320 -21.10633 -20.59678 -19.62312 -18.67833 -18.31102 -17.69027 -17.55238 -17.07772 -16.80624 -16.57135 -16.42327 -15.92841 -15.27645 -15.16250 -15.03647 -14.84771 -14.23530 -14.15322 -13.91507 -13.55632 -13.41452 -13.20932 -13.17408 -13.03387 -12.96166 -12.82401 -12.69371 -12.61407 -12.51991 -12.32950 -12.24987 -12.15769 -12.13545 -11.62638 -11.47135 -11.38931 -11.25600 -11.18452 -11.08369 -10.33188 -9.61362 -9.38189 -8.62654 -6.36299 -0.36006 0.62462 0.98186 1.35512 1.45692 1.48758 1.58432 2.19025 2.20175 2.33877 2.64959 2.89890 3.55662 3.63966 3.70232 3.96616 4.09726 4.25098 4.36307 4.39440 4.51302 4.55455 4.68459 4.74236 4.91082 4.94946 5.00682 5.01577 5.03660 5.17634 5.20252 5.24622 5.31087 5.37681 5.56695 5.62335 5.71318 5.73105 5.93063 6.00218 6.05196 6.18731 6.23709 6.64121 6.89985 6.98444 7.24458 8.33661 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.004433 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.128479 B = 6315.338511 C = 7071.007526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.151 4.151 4 C 0.166 3.834 5 H 0.079 0.921 6 C -0.112 4.112 7 C 0.444 3.556 8 O -0.506 6.506 9 O -0.527 6.527 10 N -1.095 6.095 11 S 2.711 3.289 12 O -1.010 7.010 13 O -0.973 6.973 14 C -0.606 4.606 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.138 4.138 18 C 0.073 3.927 19 C -0.506 4.506 20 H 0.069 0.931 21 C 0.040 3.960 22 N -0.826 5.826 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.265 1.265 26 H -0.262 1.262 27 C -0.116 4.116 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.415 0.585 38 H 0.424 0.576 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 -1.202 -14.353 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.208 4.208 4 C 0.059 3.941 5 H 0.097 0.903 6 C -0.150 4.150 7 C 0.286 3.714 8 O -0.392 6.392 9 O -0.341 6.341 10 N -0.855 5.855 11 S 2.804 3.196 12 O -1.000 7.000 13 O -0.962 6.962 14 C -0.695 4.695 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.158 4.158 18 C 0.070 3.930 19 C -0.536 4.536 20 H 0.087 0.913 21 C -0.174 4.174 22 N -0.452 5.452 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.186 1.186 27 C -0.137 4.137 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.275 0.725 38 H 0.260 0.740 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.724 -0.140 -14.525 16.944 hybrid contribution 0.808 -1.440 1.993 2.589 sum -7.916 -1.581 -12.532 14.907 Atomic orbital electron populations 1.21954 0.92911 1.03314 1.02682 1.21522 0.97152 0.96054 0.97155 1.21991 1.00492 0.96150 1.02189 1.20894 0.77915 0.95172 1.00162 0.90295 1.21888 1.06425 0.93766 0.92970 1.24253 0.76478 0.80186 0.90486 1.91129 1.37098 1.64901 1.46098 1.84401 1.76163 1.27813 1.45700 1.55185 1.15309 1.56163 1.58875 1.00960 0.71710 0.73599 0.73314 1.93482 1.33359 1.86507 1.86679 1.93554 1.77242 1.40474 1.84966 1.29901 1.05873 1.10623 1.23100 1.20221 0.96978 1.02066 0.95908 1.20992 0.99314 0.98778 0.95440 1.21501 0.97477 0.97332 0.99450 1.17842 0.92788 0.91233 0.91141 1.19745 0.97838 1.21545 1.14485 0.91327 1.26603 0.96872 0.95785 0.98166 1.69830 1.13962 1.33374 1.28058 0.85318 0.78655 0.78490 0.77615 1.18866 1.18868 1.18642 1.20523 0.98856 0.99681 0.94682 0.93099 0.90986 0.90263 0.88139 0.94190 0.91530 0.92821 0.84360 0.83676 0.72493 0.74007 0.85918 0.86710 0.87523 0.90253 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.89 71.98 0.64 -1.21 16 2 C -0.10 -1.62 2.68 -10.80 -0.03 -1.65 16 3 C -0.15 -3.38 7.46 71.98 0.54 -2.84 16 4 C 0.17 3.60 1.45 44.99 0.07 3.66 16 5 H 0.08 2.10 7.19 -2.39 -0.02 2.08 16 6 C -0.11 -1.89 5.27 29.85 0.16 -1.73 16 7 C 0.44 12.12 8.19 71.24 0.58 12.70 16 8 O -0.51 -19.29 12.15 21.95 0.27 -19.03 16 9 O -0.53 -12.91 13.42 -51.36 -0.69 -13.60 16 10 N -1.10 -29.09 4.02 -169.39 -0.68 -29.77 16 11 S 2.71 101.39 5.41 -56.49 -0.31 101.09 16 12 O -1.01 -44.06 17.27 -128.00 -2.21 -46.27 16 13 O -0.97 -36.69 12.87 -128.00 -1.65 -38.34 16 14 C -0.61 -27.29 3.78 22.22 0.08 -27.20 16 15 C -0.13 -5.76 8.62 22.46 0.19 -5.56 16 16 C -0.13 -5.91 10.02 22.22 0.22 -5.68 16 17 C -0.14 -7.34 8.69 22.73 0.20 -7.14 16 18 C 0.07 4.05 5.58 -21.29 -0.12 3.93 16 19 C -0.51 -28.15 9.07 23.46 0.21 -27.94 16 20 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 21 C 0.04 2.03 5.20 85.26 0.44 2.48 16 22 N -0.83 -42.78 10.84 21.83 0.24 -42.54 16 23 Si 0.98 38.87 29.59 68.60 2.03 40.90 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 27 C -0.12 -6.01 8.16 22.73 0.19 -5.83 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.64 6.37 -2.38 -0.02 0.63 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.02 6.36 -2.39 -0.02 1.00 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.44 7.00 -2.39 -0.02 1.42 16 35 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.15 1.60 6.23 -2.38 -0.01 1.59 16 37 H 0.42 9.51 9.10 -74.05 -0.67 8.83 16 38 H 0.42 9.08 8.90 -96.74 -0.86 8.22 16 39 H 0.12 4.72 7.59 -2.91 -0.02 4.70 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.11 5.89 6.11 -2.91 -0.02 5.87 16 42 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 43 H 0.09 4.72 7.60 -2.91 -0.02 4.70 16 Total: -1.00 -74.36 357.36 -0.09 -74.45 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.47 Total: 37.15 kcal Atomic # 6 Polarization: -67.40 SS G_CDS: 3.37 Total: -64.03 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.44 Total: -72.32 kcal Atomic # 8 Polarization: -112.96 SS G_CDS: -4.28 Total: -117.24 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 101.39 SS G_CDS: -0.31 Total: 101.09 kcal Total: -74.36 -0.09 -74.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.412 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds