Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.53003 * 109.46929 * 119.99484 * 2 1 3 5 5 H 1.09004 * 109.46953 * 60.00811 * 4 2 1 6 6 C 1.52995 * 109.47473 * 300.00517 * 4 2 1 7 7 C 1.50698 * 109.47161 * 175.00014 * 6 4 2 8 8 O 1.20828 * 120.00078 * 359.97438 * 7 6 4 9 9 O 1.34230 * 119.99754 * 180.02562 * 7 6 4 10 10 N 1.46496 * 109.46986 * 179.97438 * 4 2 1 11 11 S 1.65600 * 120.00572 * 265.00182 * 10 4 2 12 12 O 1.42097 * 106.40227 * 311.46495 * 11 10 4 13 13 O 1.42098 * 106.40314 * 178.53832 * 11 10 4 14 14 C 1.76200 * 107.21533 * 65.00321 * 11 10 4 15 15 C 1.38657 * 119.87534 * 269.97735 * 14 11 10 16 16 C 1.38611 * 120.50450 * 180.02562 * 15 14 11 17 17 C 1.37644 * 120.24502 * 0.02562 * 16 15 14 18 18 C 1.40691 * 119.74527 * 359.97438 * 17 16 15 19 19 C 1.41396 * 120.24245 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 150.21707 * 19 18 17 21 21 C 1.39943 * 120.00268 * 330.22360 * 19 18 17 22 22 N 1.30825 * 119.99976 * 161.72740 * 21 19 18 23 23 Si 1.86793 * 119.99780 * 341.72399 * 21 19 18 24 24 H 1.48503 * 109.47344 * 95.41200 * 23 21 19 25 25 H 1.48503 * 109.46947 * 215.41231 * 23 21 19 26 26 H 1.48503 * 109.47306 * 335.41258 * 23 21 19 27 27 C 1.37596 * 119.87915 * 90.00065 * 14 11 10 28 28 H 1.08994 * 109.47593 * 300.00205 * 1 2 3 29 29 H 1.09007 * 109.46772 * 60.00473 * 1 2 3 30 30 H 1.09004 * 109.46641 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47593 * 239.99795 * 2 1 3 32 32 H 1.08996 * 109.47186 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47205 * 299.99556 * 3 2 1 34 34 H 1.09001 * 109.47067 * 59.99868 * 3 2 1 35 35 H 1.08998 * 109.46791 * 295.00041 * 6 4 2 36 36 H 1.08997 * 109.47069 * 54.99610 * 6 4 2 37 37 H 0.96703 * 116.99856 * 180.02562 * 9 7 6 38 38 H 0.97008 * 119.99776 * 85.00734 * 10 4 2 39 39 H 1.08003 * 119.74856 * 0.02562 * 15 14 11 40 40 H 1.08002 * 119.87783 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.12108 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.12593 * 0.25677 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5299 0.0000 2.4985 7 6 1.9286 -0.7782 3.7259 8 8 2.5559 -1.8047 3.6130 9 8 1.5858 -0.3315 4.9444 10 7 3.5049 -0.7217 1.2490 11 16 4.3325 -2.0218 0.6431 12 8 3.7512 -3.1772 1.2316 13 8 5.7133 -1.7049 0.7524 14 6 3.9770 -2.1090 -1.0805 15 6 2.8940 -2.8518 -1.5256 16 6 2.6028 -2.9298 -2.8785 17 6 3.3881 -2.2693 -3.7960 18 6 4.4895 -1.5126 -3.3558 19 6 5.3029 -0.8295 -4.2891 20 1 5.8047 0.0828 -4.0020 21 6 5.4577 -1.3354 -5.5847 22 7 5.8946 -0.5586 -6.5423 23 14 5.0404 -3.1199 -5.9465 24 1 3.6530 -3.2078 -6.4688 25 1 5.9856 -3.6535 -6.9600 26 1 5.1508 -3.9170 -4.6984 27 6 4.7753 -1.4402 -1.9797 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.9645 0.9986 2.5444 36 1 0.4436 0.0783 2.4548 37 1 1.8643 -0.8646 5.7017 38 1 3.9903 0.0396 1.6039 39 1 2.2727 -3.3735 -0.8128 40 1 1.7570 -3.5116 -3.2141 41 1 3.1591 -2.3311 -4.8496 42 1 6.0015 -0.9092 -7.4404 43 1 5.6210 -0.8659 -1.6312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -159.952041 kcal Electronic energy + Delta-G solvation = -28928.631011 eV Core-core repulsion = 24872.100731 eV Total energy + Delta-G solvation = -4056.530280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46851 -38.16355 -37.81536 -36.58680 -36.08743 -35.25308 -33.79077 -32.83125 -30.74843 -30.29757 -30.12705 -27.16188 -25.41740 -24.89397 -22.40252 -21.86623 -20.91026 -19.48780 -19.19110 -18.18152 -18.06898 -17.26585 -16.81032 -16.30889 -16.18628 -15.58387 -15.23158 -14.88667 -14.60391 -14.42878 -14.20695 -13.80037 -13.41208 -13.15433 -13.09311 -12.92487 -12.88181 -12.25889 -12.10185 -11.90090 -11.78137 -11.64858 -11.61062 -11.51876 -11.41358 -11.34986 -11.30346 -11.07034 -10.95930 -10.80471 -10.60107 -10.47634 -10.30790 -10.00058 -9.77906 -9.38049 -9.16218 -8.27047 -7.88037 -7.09727 -4.64959 0.98524 1.91903 2.15364 2.40750 2.88455 2.98463 3.11047 3.20386 3.47601 3.84736 4.16606 4.35314 4.40649 4.76297 4.80685 4.93899 5.06335 5.12159 5.16155 5.21508 5.31995 5.45711 5.60854 5.71530 5.81131 5.84705 5.91072 5.98717 6.03333 6.17202 6.19722 6.36036 6.39111 6.41808 6.45671 6.58505 6.85634 7.04937 7.17337 7.19306 7.38752 7.61177 7.76662 7.81188 8.17235 8.41776 8.60756 9.92191 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.003795 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.158040 B = 7375.907326 C = 7832.777251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.148 4.148 4 C 0.171 3.829 5 H 0.102 0.898 6 C -0.122 4.122 7 C 0.465 3.535 8 O -0.487 6.487 9 O -0.525 6.525 10 N -1.110 6.110 11 S 2.690 3.310 12 O -0.957 6.957 13 O -0.973 6.973 14 C -0.626 4.626 15 C -0.157 4.157 16 C -0.092 4.092 17 C -0.198 4.198 18 C 0.075 3.925 19 C -0.443 4.443 20 H 0.095 0.905 21 C 0.084 3.916 22 N -0.801 5.801 23 Si 0.906 3.094 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.243 1.243 27 C -0.101 4.101 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.408 0.592 38 H 0.412 0.588 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.287 0.713 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 3.728 13.884 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.205 4.205 4 C 0.064 3.936 5 H 0.120 0.880 6 C -0.161 4.161 7 C 0.306 3.694 8 O -0.373 6.373 9 O -0.338 6.338 10 N -0.866 5.866 11 S 2.784 3.216 12 O -0.947 6.947 13 O -0.963 6.963 14 C -0.716 4.716 15 C -0.178 4.178 16 C -0.111 4.111 17 C -0.218 4.218 18 C 0.071 3.929 19 C -0.471 4.471 20 H 0.113 0.887 21 C -0.136 4.136 22 N -0.424 5.424 23 Si 0.731 3.269 24 H -0.194 1.194 25 H -0.214 1.214 26 H -0.166 1.166 27 C -0.122 4.122 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.267 0.733 38 H 0.245 0.755 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.642 3.042 13.684 17.600 hybrid contribution -0.035 -0.454 -0.516 0.689 sum -10.677 2.587 13.168 17.149 Atomic orbital electron populations 1.21899 0.94660 1.02156 1.01969 1.21762 0.96071 0.97621 0.98799 1.21846 1.01853 0.95248 1.01562 1.20624 0.79561 1.00949 0.92503 0.87994 1.21831 1.04721 1.00602 0.88896 1.23546 0.76750 0.84466 0.84626 1.90882 1.35919 1.23726 1.86737 1.84520 1.75226 1.56757 1.17259 1.55582 1.14428 1.38002 1.78617 1.01777 0.72635 0.72856 0.74370 1.93549 1.78408 1.46740 1.75967 1.93543 1.31256 1.84198 1.87346 1.30058 1.07244 1.11670 1.22643 1.20042 0.98540 1.03435 0.95746 1.20690 0.98526 0.98562 0.93304 1.21291 0.97442 1.04870 0.98172 1.17773 0.91657 0.91175 0.92339 1.19513 1.24732 1.09107 0.93796 0.88730 1.26148 0.91946 1.00349 0.95114 1.69679 1.33190 1.37303 1.02239 0.86386 0.78152 0.82588 0.79724 1.19444 1.21358 1.16630 1.20826 0.97844 1.00259 0.93255 0.92609 0.92014 0.92280 0.88243 0.92012 0.92313 0.92919 0.86824 0.86207 0.73333 0.75502 0.87127 0.87999 0.87711 0.90204 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.85 37.16 0.33 -0.98 16 2 C -0.12 -1.35 2.94 -90.62 -0.27 -1.61 16 3 C -0.15 -1.47 8.68 37.16 0.32 -1.15 16 4 C 0.17 1.97 1.69 -67.93 -0.11 1.86 16 5 H 0.10 1.32 7.31 -51.93 -0.38 0.94 16 6 C -0.12 -1.02 4.70 -27.89 -0.13 -1.15 16 7 C 0.47 4.93 8.19 36.00 0.29 5.23 16 8 O -0.49 -7.31 15.91 -18.82 -0.30 -7.61 16 9 O -0.52 -4.16 13.42 -39.26 -0.53 -4.68 16 10 N -1.11 -15.09 3.92 -4.89 -0.02 -15.11 16 11 S 2.69 49.91 5.71 -107.50 -0.61 49.30 16 12 O -0.96 -19.83 16.40 -57.26 -0.94 -20.77 16 13 O -0.97 -20.61 17.26 -57.17 -0.99 -21.60 16 14 C -0.63 -12.69 5.05 -39.66 -0.20 -12.89 16 15 C -0.16 -3.07 8.59 -39.29 -0.34 -3.41 16 16 C -0.09 -1.85 10.02 -39.66 -0.40 -2.24 16 17 C -0.20 -4.48 7.18 -38.87 -0.28 -4.76 16 18 C 0.07 1.80 5.10 -106.83 -0.55 1.26 16 19 C -0.44 -11.48 9.57 -37.74 -0.36 -11.84 16 20 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 21 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 22 N -0.80 -20.55 13.93 55.55 0.77 -19.78 16 23 Si 0.91 20.07 24.52 -169.99 -4.17 15.90 16 24 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 25 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 27 C -0.10 -2.27 9.26 -38.87 -0.36 -2.63 16 28 H 0.05 0.36 6.32 -51.93 -0.33 0.04 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.39 6.17 -51.93 -0.32 1.07 16 32 H 0.06 0.67 7.44 -51.93 -0.39 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.39 6.54 -51.93 -0.34 0.05 16 35 H 0.11 0.73 6.71 -51.93 -0.35 0.39 16 36 H 0.12 0.72 6.17 -51.93 -0.32 0.40 16 37 H 0.41 1.80 9.10 45.56 0.41 2.21 16 38 H 0.41 4.61 8.62 -34.47 -0.30 4.32 16 39 H 0.11 1.96 7.60 -52.48 -0.40 1.57 16 40 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.11 2.35 4.73 -52.49 -0.25 2.10 16 42 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.12 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.62 360.15 -8.13 -41.75 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.64 Total: 9.46 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -2.14 Total: -32.29 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.75 Total: -34.89 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.75 Total: -54.66 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.17 Total: 15.90 kcal Atomic # 16 Polarization: 49.91 SS G_CDS: -0.61 Total: 49.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.62 -8.13 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.205 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds