Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 C 1.53003 * 109.46929 * 119.99484 * 2 1 3 5 5 H 1.09004 * 109.46953 * 60.00811 * 4 2 1 6 6 C 1.52995 * 109.47473 * 300.00517 * 4 2 1 7 7 C 1.50698 * 109.47161 * 175.00014 * 6 4 2 8 8 O 1.20828 * 120.00078 * 359.97438 * 7 6 4 9 9 O 1.34230 * 119.99754 * 180.02562 * 7 6 4 10 10 N 1.46496 * 109.46986 * 179.97438 * 4 2 1 11 11 S 1.65600 * 120.00572 * 265.00182 * 10 4 2 12 12 O 1.42097 * 106.40227 * 311.46495 * 11 10 4 13 13 O 1.42098 * 106.40314 * 178.53832 * 11 10 4 14 14 C 1.76200 * 107.21533 * 65.00321 * 11 10 4 15 15 C 1.38657 * 119.87534 * 269.97735 * 14 11 10 16 16 C 1.38611 * 120.50450 * 180.02562 * 15 14 11 17 17 C 1.37644 * 120.24502 * 0.02562 * 16 15 14 18 18 C 1.40691 * 119.74527 * 359.97438 * 17 16 15 19 19 C 1.41396 * 120.24245 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99598 * 150.21707 * 19 18 17 21 21 C 1.39943 * 120.00268 * 330.22360 * 19 18 17 22 22 N 1.30825 * 119.99976 * 161.72740 * 21 19 18 23 23 Si 1.86793 * 119.99780 * 341.72399 * 21 19 18 24 24 H 1.48503 * 109.47344 * 95.41200 * 23 21 19 25 25 H 1.48503 * 109.46947 * 215.41231 * 23 21 19 26 26 H 1.48503 * 109.47306 * 335.41258 * 23 21 19 27 27 C 1.37596 * 119.87915 * 90.00065 * 14 11 10 28 28 H 1.08994 * 109.47593 * 300.00205 * 1 2 3 29 29 H 1.09007 * 109.46772 * 60.00473 * 1 2 3 30 30 H 1.09004 * 109.46641 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47593 * 239.99795 * 2 1 3 32 32 H 1.08996 * 109.47186 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47205 * 299.99556 * 3 2 1 34 34 H 1.09001 * 109.47067 * 59.99868 * 3 2 1 35 35 H 1.08998 * 109.46791 * 295.00041 * 6 4 2 36 36 H 1.08997 * 109.47069 * 54.99610 * 6 4 2 37 37 H 0.96703 * 116.99856 * 180.02562 * 9 7 6 38 38 H 0.97008 * 119.99776 * 85.00734 * 10 4 2 39 39 H 1.08003 * 119.74856 * 0.02562 * 15 14 11 40 40 H 1.08002 * 119.87783 * 179.97438 * 16 15 14 41 41 H 1.07997 * 120.12108 * 180.02562 * 17 16 15 42 42 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.12593 * 0.25677 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5299 0.0000 2.4985 7 6 1.9286 -0.7782 3.7259 8 8 2.5559 -1.8047 3.6130 9 8 1.5858 -0.3315 4.9444 10 7 3.5049 -0.7217 1.2490 11 16 4.3325 -2.0218 0.6431 12 8 3.7512 -3.1772 1.2316 13 8 5.7133 -1.7049 0.7524 14 6 3.9770 -2.1090 -1.0805 15 6 2.8940 -2.8518 -1.5256 16 6 2.6028 -2.9298 -2.8785 17 6 3.3881 -2.2693 -3.7960 18 6 4.4895 -1.5126 -3.3558 19 6 5.3029 -0.8295 -4.2891 20 1 5.8047 0.0828 -4.0020 21 6 5.4577 -1.3354 -5.5847 22 7 5.8946 -0.5586 -6.5423 23 14 5.0404 -3.1199 -5.9465 24 1 3.6530 -3.2078 -6.4688 25 1 5.9856 -3.6535 -6.9600 26 1 5.1508 -3.9170 -4.6984 27 6 4.7753 -1.4402 -1.9797 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.9645 0.9986 2.5444 36 1 0.4436 0.0783 2.4548 37 1 1.8643 -0.8646 5.7017 38 1 3.9903 0.0396 1.6039 39 1 2.2727 -3.3735 -0.8128 40 1 1.7570 -3.5116 -3.2141 41 1 3.1591 -2.3311 -4.8496 42 1 6.0015 -0.9092 -7.4404 43 1 5.6210 -0.8659 -1.6312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -185.775910 kcal Electronic energy + Delta-G solvation = -28929.750818 eV Core-core repulsion = 24872.100731 eV Total energy + Delta-G solvation = -4057.650087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28272 -39.72326 -38.90232 -38.16733 -36.88808 -36.85246 -35.63406 -33.83667 -32.53956 -31.88458 -31.07545 -27.89657 -27.24076 -25.79376 -24.09078 -22.72010 -22.58840 -20.78180 -20.27228 -19.73367 -18.90425 -18.60478 -18.05550 -17.80241 -17.18855 -16.96069 -16.68719 -16.52709 -15.95646 -15.53612 -15.30844 -15.02725 -14.83540 -14.67938 -14.33069 -14.01440 -13.79213 -13.72186 -13.57544 -13.34685 -13.15905 -13.05893 -12.89490 -12.81678 -12.74356 -12.54461 -12.47172 -12.38673 -12.19864 -12.01754 -11.78821 -11.74640 -11.54834 -11.48313 -11.28608 -11.04182 -10.38889 -9.96624 -9.66814 -8.96808 -6.58751 -0.50901 0.19639 0.65894 1.20240 1.35544 1.38040 1.42480 2.03280 2.11460 2.23145 2.43719 2.80607 3.31096 3.45039 3.62159 3.94694 4.05185 4.15889 4.25515 4.33860 4.37726 4.43061 4.45577 4.61223 4.70036 4.76649 4.84088 4.92387 4.94895 5.06308 5.07318 5.15532 5.17020 5.35008 5.42810 5.44837 5.56554 5.60515 5.63897 5.76913 5.77569 5.99634 6.12841 6.24926 6.58967 6.70218 7.13230 8.11481 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.003795 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.158040 B = 7375.907326 C = 7832.777251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.165 3.835 5 H 0.090 0.910 6 C -0.117 4.117 7 C 0.470 3.530 8 O -0.539 6.539 9 O -0.515 6.515 10 N -1.095 6.095 11 S 2.710 3.290 12 O -0.974 6.974 13 O -1.004 7.004 14 C -0.628 4.628 15 C -0.137 4.137 16 C -0.092 4.092 17 C -0.202 4.202 18 C 0.059 3.941 19 C -0.483 4.483 20 H 0.061 0.939 21 C 0.051 3.949 22 N -0.841 5.841 23 Si 0.954 3.046 24 H -0.246 1.246 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.119 4.119 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.424 0.576 38 H 0.424 0.576 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.296 0.704 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 3.278 15.766 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.207 4.207 4 C 0.058 3.942 5 H 0.108 0.892 6 C -0.155 4.155 7 C 0.314 3.686 8 O -0.429 6.429 9 O -0.329 6.329 10 N -0.856 5.856 11 S 2.802 3.198 12 O -0.964 6.964 13 O -0.994 6.994 14 C -0.716 4.716 15 C -0.157 4.157 16 C -0.111 4.111 17 C -0.222 4.222 18 C 0.055 3.945 19 C -0.512 4.512 20 H 0.079 0.921 21 C -0.165 4.165 22 N -0.467 5.467 23 Si 0.777 3.223 24 H -0.171 1.171 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.140 4.140 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.285 0.715 38 H 0.261 0.739 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.840 2.616 15.567 20.993 hybrid contribution 0.804 -0.284 -0.802 1.170 sum -13.036 2.332 14.765 19.834 Atomic orbital electron populations 1.21911 0.92499 1.02696 1.03399 1.21687 0.97843 0.97609 0.96923 1.21883 1.00982 0.94924 1.02932 1.20840 0.77695 1.01066 0.94618 0.89228 1.21907 1.06744 1.00753 0.86132 1.23899 0.75438 0.83620 0.85688 1.90880 1.38463 1.26064 1.87474 1.84482 1.74580 1.56679 1.17168 1.55186 1.15677 1.37190 1.77585 1.01037 0.71966 0.73338 0.73431 1.93527 1.78647 1.48494 1.75749 1.93497 1.33687 1.84826 1.87419 1.30389 1.06793 1.10708 1.23746 1.20510 0.97523 1.01327 0.96356 1.21121 0.99043 0.98002 0.92938 1.21474 0.97148 1.04538 0.99028 1.17890 0.92121 0.91779 0.92694 1.19473 1.27005 1.09368 0.95347 0.92076 1.26753 0.91785 1.03343 0.94600 1.69702 1.35335 1.38776 1.02902 0.85662 0.79372 0.78215 0.79096 1.17108 1.20161 1.18160 1.20811 0.98549 1.01335 0.93262 0.89556 0.92281 0.92213 0.91758 0.93507 0.93048 0.89494 0.84176 0.82807 0.71518 0.73940 0.84460 0.83955 0.87391 0.89366 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.85 71.98 0.64 -1.43 16 2 C -0.12 -2.38 2.94 -10.79 -0.03 -2.41 16 3 C -0.15 -2.66 8.68 71.98 0.63 -2.04 16 4 C 0.16 3.37 1.69 44.99 0.08 3.45 16 5 H 0.09 2.11 7.31 -2.39 -0.02 2.09 16 6 C -0.12 -1.48 4.70 29.85 0.14 -1.34 16 7 C 0.47 8.53 8.19 71.24 0.58 9.12 16 8 O -0.54 -15.26 15.91 22.02 0.35 -14.91 16 9 O -0.52 -6.35 13.42 -51.41 -0.69 -7.04 16 10 N -1.10 -28.40 3.92 -169.39 -0.66 -29.06 16 11 S 2.71 99.58 5.71 -56.49 -0.32 99.26 16 12 O -0.97 -39.41 16.40 -127.92 -2.10 -41.50 16 13 O -1.00 -43.15 17.26 -128.00 -2.21 -45.36 16 14 C -0.63 -25.28 5.05 22.22 0.11 -25.17 16 15 C -0.14 -5.08 8.59 22.46 0.19 -4.89 16 16 C -0.09 -3.48 10.02 22.22 0.22 -3.26 16 17 C -0.20 -9.01 7.18 22.73 0.16 -8.85 16 18 C 0.06 2.92 5.10 -21.29 -0.11 2.81 16 19 C -0.48 -26.52 9.57 23.46 0.22 -26.30 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 21 C 0.05 2.66 5.40 85.26 0.46 3.12 16 22 N -0.84 -45.04 13.93 21.83 0.30 -44.74 16 23 Si 0.95 41.39 24.52 68.60 1.68 43.07 16 24 H -0.25 -9.73 6.71 99.48 0.67 -9.06 16 25 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.26 -11.66 6.86 99.48 0.68 -10.97 16 27 C -0.12 -5.51 9.26 22.73 0.21 -5.30 16 28 H 0.09 0.67 6.32 -2.39 -0.02 0.66 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.73 6.17 -2.39 -0.01 1.71 16 32 H 0.05 0.96 7.44 -2.39 -0.02 0.94 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.92 6.54 -2.39 -0.02 0.91 16 35 H 0.14 1.09 6.71 -2.39 -0.02 1.07 16 36 H 0.15 0.97 6.17 -2.39 -0.01 0.96 16 37 H 0.42 2.51 9.10 -74.05 -0.67 1.83 16 38 H 0.42 8.94 8.62 -96.74 -0.83 8.10 16 39 H 0.14 4.42 7.60 -2.91 -0.02 4.40 16 40 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.11 4.71 4.73 -2.91 -0.01 4.69 16 42 H 0.30 14.17 8.30 -92.71 -0.77 13.40 16 43 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -76.45 360.15 -0.64 -77.09 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.49 Total: 25.67 kcal Atomic # 6 Polarization: -65.98 SS G_CDS: 3.51 Total: -62.48 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -0.36 Total: -73.80 kcal Atomic # 8 Polarization: -104.17 SS G_CDS: -4.65 Total: -108.82 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.68 Total: 43.07 kcal Atomic # 16 Polarization: 99.58 SS G_CDS: -0.32 Total: 99.26 kcal Total: -76.45 -0.64 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.691 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds