Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47147 * 299.99934 * 3 2 1 5 5 C 1.52999 * 109.47224 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47568 * 179.97438 * 5 3 2 7 7 S 1.65597 * 120.00332 * 164.99558 * 6 5 3 8 8 O 1.42098 * 106.40379 * 311.46075 * 7 6 5 9 9 O 1.42104 * 106.40149 * 178.53881 * 7 6 5 10 10 C 1.76204 * 107.21679 * 65.00002 * 7 6 5 11 11 C 1.38654 * 119.87418 * 269.72948 * 10 7 6 12 12 C 1.38622 * 120.49875 * 179.72297 * 11 10 7 13 13 C 1.37640 * 120.24361 * 0.54792 * 12 11 10 14 14 C 1.40696 * 119.74725 * 359.72732 * 13 12 11 15 15 C 1.41400 * 120.24333 * 180.02562 * 14 13 12 16 16 H 1.07990 * 120.00099 * 204.37328 * 15 14 13 17 17 C 1.39953 * 119.99945 * 24.36778 * 15 14 13 18 18 N 1.30827 * 119.99809 * 17.86226 * 17 15 14 19 19 Si 1.86803 * 119.99871 * 197.86628 * 17 15 14 20 20 H 1.48498 * 109.47176 * 90.00093 * 19 17 15 21 21 H 1.48498 * 109.46622 * 209.99939 * 19 17 15 22 22 H 1.48498 * 109.46591 * 329.99687 * 19 17 15 23 23 C 1.37600 * 119.87377 * 89.99726 * 10 7 6 24 24 C 1.50703 * 109.47549 * 59.99935 * 3 2 1 25 25 O 1.20821 * 119.99950 * 240.00136 * 24 3 2 26 26 O 1.34224 * 119.99505 * 59.99912 * 24 3 2 27 27 H 1.09008 * 109.47023 * 299.99731 * 1 2 3 28 28 H 1.08993 * 109.47285 * 59.99976 * 1 2 3 29 29 H 1.08995 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46809 * 239.99755 * 2 1 3 31 31 H 1.09002 * 109.46721 * 119.99894 * 2 1 3 32 32 H 1.08998 * 109.47120 * 300.00549 * 4 3 2 33 33 H 1.09000 * 109.47041 * 59.99961 * 4 3 2 34 34 H 1.08995 * 109.47745 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47013 * 59.99469 * 5 3 2 36 36 H 1.09007 * 109.46927 * 299.99949 * 5 3 2 37 37 H 0.97003 * 119.99746 * 344.99436 * 6 5 3 38 38 H 1.07995 * 119.75394 * 359.97438 * 11 10 7 39 39 H 1.07995 * 119.87484 * 180.25582 * 12 11 10 40 40 H 1.08007 * 120.12253 * 179.70577 * 13 12 11 41 41 H 0.96999 * 119.99734 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.12814 * 359.97438 * 23 10 7 43 43 H 0.96706 * 116.99390 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 3.5700 1.4425 -0.0006 6 7 4.0584 2.8237 -0.0013 7 16 5.6405 3.1428 0.3692 8 8 5.9255 2.4263 1.5629 9 8 5.8051 4.5491 0.2487 10 6 6.6291 2.4159 -0.8953 11 6 7.0791 1.1118 -0.7563 12 6 7.8528 0.5253 -1.7457 13 6 8.1922 1.2373 -2.8737 14 6 7.7459 2.5632 -3.0228 15 6 8.0878 3.3041 -4.1776 16 1 8.1045 4.3833 -4.1415 17 6 8.4048 2.6389 -5.3674 18 7 8.0582 1.3878 -5.5296 19 14 9.3227 3.5373 -6.7238 20 1 10.7849 3.3658 -6.5296 21 1 8.9295 2.9778 -8.0420 22 1 8.9833 4.9822 -6.6780 23 6 6.9562 3.1465 -2.0146 24 6 1.5377 2.1530 1.2304 25 8 0.8431 3.1353 1.1195 26 8 1.8620 1.6944 2.4495 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 1.6498 -2.1392 33 1 0.4400 2.1637 -1.2493 34 1 1.8936 3.1912 -1.2496 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.4549 3.5514 -0.2187 38 1 6.8216 0.5474 0.1277 39 1 8.1945 -0.4925 -1.6288 40 1 8.7991 0.7799 -3.6412 41 1 8.2776 0.9268 -6.3544 42 1 6.6078 4.1634 -2.1190 43 1 1.5159 2.1832 3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -165.151116 kcal Electronic energy + Delta-G solvation = -28266.466251 eV Core-core repulsion = 24209.710523 eV Total energy + Delta-G solvation = -4056.755729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87926 -37.68022 -37.41158 -36.66266 -36.17954 -35.33152 -33.99150 -33.86439 -30.10812 -29.84592 -29.77594 -27.00415 -25.52006 -24.35355 -23.18703 -21.92762 -21.01941 -19.88633 -19.15088 -18.04039 -17.99301 -17.28728 -16.67044 -16.07992 -15.89522 -15.59763 -15.17680 -14.92825 -14.66679 -14.43307 -14.29538 -13.73237 -13.48987 -13.37274 -13.13346 -12.62095 -12.55765 -12.34532 -12.19830 -11.93773 -11.81157 -11.66696 -11.63720 -11.57522 -11.53118 -11.43110 -11.40272 -11.02729 -11.01457 -10.91191 -10.85318 -10.62902 -10.50680 -9.82931 -9.70906 -9.38458 -9.23469 -8.07755 -7.73989 -6.96029 -4.56622 0.97831 2.07554 2.16033 2.60211 2.86525 2.98346 3.02557 3.04724 3.50056 3.80816 4.18674 4.31090 4.39415 4.46367 4.49872 4.96742 5.00931 5.03973 5.18660 5.32010 5.36936 5.47818 5.55505 5.65794 5.68631 5.74461 5.78587 5.91587 5.94838 6.02749 6.13707 6.15090 6.38140 6.62830 6.73038 6.80325 6.99667 7.10013 7.18788 7.35153 7.69450 7.76869 7.78221 7.91318 8.37525 8.63868 8.68724 9.99361 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003307 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.455616 B = 8464.960427 C = 9048.620673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.056 4.056 4 C -0.140 4.140 5 C 0.129 3.871 6 N -1.126 6.126 7 S 2.689 3.311 8 O -0.972 6.972 9 O -0.971 6.971 10 C -0.631 4.631 11 C -0.150 4.150 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.092 3.908 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.123 4.123 24 C 0.492 3.508 25 O -0.515 6.515 26 O -0.509 6.509 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.283 0.717 42 H 0.111 0.889 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.863 -4.760 6.750 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.059 4.059 4 C -0.197 4.197 5 C 0.003 3.997 6 N -0.885 5.885 7 S 2.785 3.215 8 O -0.962 6.962 9 O -0.961 6.961 10 C -0.723 4.723 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.145 4.145 24 C 0.335 3.665 25 O -0.403 6.403 26 O -0.320 6.320 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.514 -4.563 7.009 14.231 hybrid contribution 0.056 0.571 -0.978 1.134 sum -11.457 -3.993 6.032 13.549 Atomic orbital electron populations 1.21889 0.95122 1.02311 1.02173 1.21608 0.96521 0.92563 1.04528 1.20854 0.96481 0.97452 0.91088 1.21876 1.02070 1.00954 0.94787 1.21355 0.91009 0.82994 1.04383 1.55723 1.29887 1.13795 1.89088 1.01685 0.72136 0.73257 0.74466 1.93516 1.83613 1.74586 1.44492 1.93545 1.85001 1.30109 1.87495 1.29697 1.19915 1.06342 1.16342 1.20088 1.04477 0.93238 0.99348 1.20809 0.99815 0.98402 0.94903 1.21644 0.99998 0.95731 0.96436 1.17683 0.89224 0.92339 0.91933 1.19645 1.40427 0.95048 0.93822 0.89879 1.25931 0.93514 0.94896 0.99906 1.69777 1.34222 1.11168 1.26702 0.86242 0.80361 0.80776 0.79039 1.19136 1.20196 1.18410 1.20786 1.00723 0.98711 0.94242 1.23293 0.76379 0.82113 0.84758 1.90708 1.36154 1.26090 1.87323 1.84551 1.72086 1.58714 1.16667 0.93191 0.91760 0.91826 0.89438 0.90004 0.90237 0.91103 0.91363 0.89340 0.88871 0.75127 0.87522 0.88356 0.85749 0.90571 0.87052 0.73323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.31 37.16 0.35 -0.87 16 2 C -0.11 -0.94 4.93 -26.73 -0.13 -1.08 16 3 C -0.06 -0.59 0.52 -155.66 -0.08 -0.67 16 4 C -0.14 -1.44 7.24 37.16 0.27 -1.17 16 5 C 0.13 1.60 5.05 -4.04 -0.02 1.58 16 6 N -1.13 -16.42 5.48 -10.61 -0.06 -16.48 16 7 S 2.69 49.95 5.74 -107.50 -0.62 49.33 16 8 O -0.97 -19.40 16.73 -57.17 -0.96 -20.36 16 9 O -0.97 -20.56 17.27 -57.17 -0.99 -21.54 16 10 C -0.63 -13.36 5.94 -39.66 -0.24 -13.60 16 11 C -0.15 -3.12 9.53 -39.29 -0.37 -3.50 16 12 C -0.12 -2.59 10.02 -39.66 -0.40 -2.98 16 13 C -0.12 -2.86 8.70 -38.87 -0.34 -3.20 16 14 C 0.09 2.32 5.58 -106.82 -0.60 1.72 16 15 C -0.46 -11.61 9.06 -37.74 -0.34 -11.95 16 16 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 17 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 18 N -0.79 -19.11 10.95 55.55 0.61 -18.51 16 19 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 23 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 24 C 0.49 5.82 5.15 36.01 0.19 6.01 16 25 O -0.51 -7.26 16.74 -18.75 -0.31 -7.57 16 26 O -0.51 -5.09 13.23 -39.24 -0.52 -5.61 16 27 H 0.05 0.42 7.22 -51.92 -0.37 0.05 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.68 6.39 -51.93 -0.33 0.35 16 34 H 0.07 0.76 6.56 -51.93 -0.34 0.42 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.14 7.73 -51.92 -0.40 0.74 16 37 H 0.41 5.56 6.94 -34.47 -0.24 5.32 16 38 H 0.11 1.97 7.59 -52.49 -0.40 1.57 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 41 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 42 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 43 H 0.41 2.45 9.10 45.56 0.41 2.87 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -32.10 369.14 -9.29 -41.38 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.81 Total: 12.31 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: -2.16 Total: -31.27 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.55 Total: -34.99 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -2.78 Total: -55.09 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 49.95 SS G_CDS: -0.62 Total: 49.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.10 -9.29 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.767 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds