Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47147 * 299.99934 * 3 2 1 5 5 C 1.52999 * 109.47224 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47568 * 179.97438 * 5 3 2 7 7 S 1.65597 * 120.00332 * 164.99558 * 6 5 3 8 8 O 1.42098 * 106.40379 * 311.46075 * 7 6 5 9 9 O 1.42104 * 106.40149 * 178.53881 * 7 6 5 10 10 C 1.76204 * 107.21679 * 65.00002 * 7 6 5 11 11 C 1.38654 * 119.87418 * 269.72948 * 10 7 6 12 12 C 1.38622 * 120.49875 * 179.72297 * 11 10 7 13 13 C 1.37640 * 120.24361 * 0.54792 * 12 11 10 14 14 C 1.40696 * 119.74725 * 359.72732 * 13 12 11 15 15 C 1.41400 * 120.24333 * 180.02562 * 14 13 12 16 16 H 1.07990 * 120.00099 * 204.37328 * 15 14 13 17 17 C 1.39953 * 119.99945 * 24.36778 * 15 14 13 18 18 N 1.30827 * 119.99809 * 17.86226 * 17 15 14 19 19 Si 1.86803 * 119.99871 * 197.86628 * 17 15 14 20 20 H 1.48498 * 109.47176 * 90.00093 * 19 17 15 21 21 H 1.48498 * 109.46622 * 209.99939 * 19 17 15 22 22 H 1.48498 * 109.46591 * 329.99687 * 19 17 15 23 23 C 1.37600 * 119.87377 * 89.99726 * 10 7 6 24 24 C 1.50703 * 109.47549 * 59.99935 * 3 2 1 25 25 O 1.20821 * 119.99950 * 240.00136 * 24 3 2 26 26 O 1.34224 * 119.99505 * 59.99912 * 24 3 2 27 27 H 1.09008 * 109.47023 * 299.99731 * 1 2 3 28 28 H 1.08993 * 109.47285 * 59.99976 * 1 2 3 29 29 H 1.08995 * 109.46941 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46809 * 239.99755 * 2 1 3 31 31 H 1.09002 * 109.46721 * 119.99894 * 2 1 3 32 32 H 1.08998 * 109.47120 * 300.00549 * 4 3 2 33 33 H 1.09000 * 109.47041 * 59.99961 * 4 3 2 34 34 H 1.08995 * 109.47745 * 180.02562 * 4 3 2 35 35 H 1.08998 * 109.47013 * 59.99469 * 5 3 2 36 36 H 1.09007 * 109.46927 * 299.99949 * 5 3 2 37 37 H 0.97003 * 119.99746 * 344.99436 * 6 5 3 38 38 H 1.07995 * 119.75394 * 359.97438 * 11 10 7 39 39 H 1.07995 * 119.87484 * 180.25582 * 12 11 10 40 40 H 1.08007 * 120.12253 * 179.70577 * 13 12 11 41 41 H 0.96999 * 119.99734 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.12814 * 359.97438 * 23 10 7 43 43 H 0.96706 * 116.99390 * 180.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 3.5700 1.4425 -0.0006 6 7 4.0584 2.8237 -0.0013 7 16 5.6405 3.1428 0.3692 8 8 5.9255 2.4263 1.5629 9 8 5.8051 4.5491 0.2487 10 6 6.6291 2.4159 -0.8953 11 6 7.0791 1.1118 -0.7563 12 6 7.8528 0.5253 -1.7457 13 6 8.1922 1.2373 -2.8737 14 6 7.7459 2.5632 -3.0228 15 6 8.0878 3.3041 -4.1776 16 1 8.1045 4.3833 -4.1415 17 6 8.4048 2.6389 -5.3674 18 7 8.0582 1.3878 -5.5296 19 14 9.3227 3.5373 -6.7238 20 1 10.7849 3.3658 -6.5296 21 1 8.9295 2.9778 -8.0420 22 1 8.9833 4.9822 -6.6780 23 6 6.9562 3.1465 -2.0146 24 6 1.5377 2.1530 1.2304 25 8 0.8431 3.1353 1.1195 26 8 1.8620 1.6944 2.4495 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 1.6498 -2.1392 33 1 0.4400 2.1637 -1.2493 34 1 1.8936 3.1912 -1.2496 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.4549 3.5514 -0.2187 38 1 6.8216 0.5474 0.1277 39 1 8.1945 -0.4925 -1.6288 40 1 8.7991 0.7799 -3.6412 41 1 8.2776 0.9268 -6.3544 42 1 6.6078 4.1634 -2.1190 43 1 1.5159 2.1832 3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = -187.335729 kcal Electronic energy + Delta-G solvation = -28267.428248 eV Core-core repulsion = 24209.710523 eV Total energy + Delta-G solvation = -4057.717726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76782 -39.43311 -38.43384 -38.13758 -37.08583 -36.93733 -35.65661 -34.97981 -31.89323 -31.57325 -30.58967 -27.89227 -27.32606 -25.30231 -23.91998 -23.65500 -22.77662 -20.82387 -20.52885 -19.65953 -18.94501 -18.61294 -17.78669 -17.69485 -17.07641 -16.80880 -16.67014 -16.50558 -15.95243 -15.45794 -15.24945 -15.17067 -15.04028 -14.52401 -14.28811 -14.02717 -13.68222 -13.48925 -13.34383 -13.29866 -13.14077 -13.09577 -13.04048 -12.96555 -12.80382 -12.78790 -12.58877 -12.53492 -12.34526 -12.20385 -11.86966 -11.59547 -11.53828 -11.42272 -11.31179 -11.13537 -10.53384 -9.83750 -9.54163 -8.72355 -6.43857 -0.53572 0.41309 0.86316 1.17386 1.38292 1.46994 1.50420 2.03783 2.13734 2.18404 2.55978 2.75930 3.34220 3.50771 3.55818 3.63578 3.78443 4.25587 4.30128 4.34291 4.36444 4.48218 4.58507 4.64133 4.70078 4.76148 4.87259 4.92266 4.92767 5.00849 5.07411 5.11097 5.16004 5.21787 5.24764 5.42318 5.45028 5.58408 5.60719 5.89900 5.92363 5.95883 6.12840 6.54412 6.81087 6.86316 6.97648 8.25355 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.003307 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.455616 B = 8464.960427 C = 9048.620673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.053 4.053 4 C -0.143 4.143 5 C 0.119 3.881 6 N -1.115 6.115 7 S 2.719 3.281 8 O -0.980 6.980 9 O -0.999 6.999 10 C -0.635 4.635 11 C -0.144 4.144 12 C -0.120 4.120 13 C -0.139 4.139 14 C 0.064 3.936 15 C -0.500 4.500 16 H 0.075 0.925 17 C 0.041 3.959 18 N -0.818 5.818 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.146 4.146 24 C 0.492 3.508 25 O -0.543 6.543 26 O -0.508 6.508 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.421 0.579 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.292 0.708 42 H 0.106 0.894 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.484 -6.185 7.118 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.055 4.055 4 C -0.200 4.200 5 C -0.007 4.007 6 N -0.877 5.877 7 S 2.812 3.188 8 O -0.970 6.970 9 O -0.989 6.989 10 C -0.725 4.725 11 C -0.164 4.164 12 C -0.139 4.139 13 C -0.159 4.159 14 C 0.060 3.940 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.175 4.175 18 N -0.444 5.444 19 Si 0.800 3.200 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.167 4.167 24 C 0.336 3.664 25 O -0.434 6.434 26 O -0.321 6.321 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.257 0.743 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -12.122 -6.012 7.389 15.417 hybrid contribution 0.149 0.942 -0.931 1.333 sum -11.973 -5.070 6.458 14.517 Atomic orbital electron populations 1.21885 0.94677 1.03152 1.01655 1.21663 0.96844 0.90854 1.05615 1.20890 0.95032 0.98968 0.90657 1.21914 1.02522 1.00314 0.95217 1.21651 0.92381 0.81435 1.05203 1.55406 1.28156 1.15378 1.88745 1.00781 0.72481 0.72081 0.73470 1.93501 1.84364 1.74662 1.44454 1.93505 1.85876 1.31882 1.87637 1.30114 1.19812 1.06482 1.16049 1.20503 1.02994 0.93102 0.99842 1.21155 0.99117 0.99655 0.93958 1.21657 1.00963 0.95788 0.97460 1.18012 0.90021 0.93253 0.92682 1.19849 1.42956 0.94961 0.95154 0.90663 1.26659 0.93619 0.95639 1.01555 1.69798 1.34599 1.12235 1.27739 0.85231 0.78957 0.79309 0.76459 1.18696 1.18888 1.18589 1.20829 1.01603 0.98975 0.95293 1.23537 0.75800 0.81606 0.85486 1.90700 1.37565 1.27311 1.87780 1.84513 1.71846 1.58854 1.16875 0.94238 0.91771 0.90308 0.87986 0.89309 0.89248 0.90530 0.92690 0.88396 0.88207 0.74269 0.84529 0.85253 0.86900 0.89712 0.87593 0.71403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.31 71.98 0.67 -1.38 16 2 C -0.11 -1.55 4.93 30.59 0.15 -1.40 16 3 C -0.05 -1.01 0.52 -52.93 -0.03 -1.04 16 4 C -0.14 -2.75 7.24 71.98 0.52 -2.23 16 5 C 0.12 2.68 5.05 86.38 0.44 3.12 16 6 N -1.11 -31.04 5.48 -187.49 -1.03 -32.07 16 7 S 2.72 98.10 5.74 -56.49 -0.32 97.78 16 8 O -0.98 -37.08 16.73 -128.00 -2.14 -39.22 16 9 O -1.00 -42.16 17.27 -128.00 -2.21 -44.37 16 10 C -0.64 -26.49 5.94 22.22 0.13 -26.36 16 11 C -0.14 -5.69 9.53 22.46 0.21 -5.47 16 12 C -0.12 -5.01 10.02 22.22 0.22 -4.78 16 13 C -0.14 -6.79 8.70 22.73 0.20 -6.60 16 14 C 0.06 3.30 5.58 -21.29 -0.12 3.18 16 15 C -0.50 -26.16 9.06 23.46 0.21 -25.94 16 16 H 0.08 3.87 7.91 -2.92 -0.02 3.85 16 17 C 0.04 1.98 5.14 85.26 0.44 2.42 16 18 N -0.82 -39.86 10.95 21.83 0.24 -39.62 16 19 Si 0.98 36.68 29.60 68.60 2.03 38.71 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 C -0.15 -7.02 9.26 22.73 0.21 -6.81 16 24 C 0.49 10.86 5.15 71.24 0.37 11.23 16 25 O -0.54 -14.85 16.74 21.98 0.37 -14.48 16 26 O -0.51 -9.12 13.23 -51.36 -0.68 -9.80 16 27 H 0.04 0.60 7.22 -2.38 -0.02 0.58 16 28 H 0.06 0.84 6.43 -2.39 -0.02 0.83 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.13 8.11 -2.39 -0.02 1.11 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.38 6.39 -2.39 -0.02 1.37 16 34 H 0.05 1.20 6.56 -2.39 -0.02 1.18 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.16 7.73 -2.38 -0.02 2.14 16 37 H 0.42 10.97 6.94 -96.74 -0.67 10.29 16 38 H 0.14 4.57 7.59 -2.91 -0.02 4.55 16 39 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 41 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 42 H 0.11 5.05 7.60 -2.91 -0.02 5.02 16 43 H 0.42 4.31 9.10 -74.05 -0.67 3.64 16 Total: -1.00 -69.10 369.14 -0.40 -69.50 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.28 Total: 35.64 kcal Atomic # 6 Polarization: -65.71 SS G_CDS: 3.63 Total: -62.08 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -0.79 Total: -71.68 kcal Atomic # 8 Polarization: -103.20 SS G_CDS: -4.66 Total: -107.87 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Atomic # 16 Polarization: 98.10 SS G_CDS: -0.32 Total: 97.78 kcal Total: -69.10 -0.40 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.833 kcal (2) G-P(sol) polarization free energy of solvation -69.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds