Wall clock time and date at job start Sat Apr 11 2020 06:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 N 1.46496 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00278 * 275.00008 * 4 3 2 6 6 C 1.50701 * 109.47614 * 275.00309 * 5 4 3 7 7 O 1.20830 * 119.99330 * 359.97438 * 6 5 4 8 8 O 1.34222 * 120.00577 * 179.97438 * 6 5 4 9 9 C 1.45202 * 117.00152 * 179.97438 * 8 6 5 10 10 S 1.65598 * 120.00297 * 95.00159 * 4 3 2 11 11 O 1.42098 * 106.40579 * 156.45777 * 10 4 3 12 12 O 1.42104 * 106.40061 * 23.53963 * 10 4 3 13 13 C 1.76195 * 107.21796 * 269.99994 * 10 4 3 14 14 C 1.38662 * 119.87952 * 270.24723 * 13 10 4 15 15 C 1.38613 * 120.50337 * 180.30428 * 14 13 10 16 16 C 1.37635 * 120.24644 * 359.44170 * 15 14 13 17 17 C 1.40700 * 119.74734 * 0.27966 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46865 * 90.00477 * 22 20 18 24 24 H 1.48493 * 109.47164 * 210.00257 * 22 20 18 25 25 H 1.48499 * 109.47067 * 330.00626 * 22 20 18 26 26 C 1.37597 * 119.87685 * 90.00071 * 13 10 4 27 27 H 1.09000 * 109.47346 * 59.99144 * 1 2 3 28 28 H 1.08995 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46623 * 299.99392 * 1 2 3 30 30 H 1.09003 * 109.46777 * 239.99884 * 2 1 3 31 31 H 1.09000 * 109.47346 * 120.00856 * 2 1 3 32 32 H 1.09001 * 109.47188 * 60.00738 * 3 2 1 33 33 H 1.08992 * 109.47644 * 300.00407 * 3 2 1 34 34 H 1.09003 * 109.47285 * 35.00119 * 5 4 3 35 35 H 1.09000 * 109.47617 * 154.99741 * 5 4 3 36 36 H 1.09005 * 109.46866 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47362 * 299.99700 * 9 8 6 38 38 H 1.09004 * 109.46890 * 60.00347 * 9 8 6 39 39 H 1.07998 * 119.74547 * 0.04857 * 14 13 10 40 40 H 1.07991 * 119.87429 * 179.72331 * 15 14 13 41 41 H 1.07998 * 120.12988 * 180.25464 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.12756 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.2381 1.3316 1.2629 6 6 4.3823 2.6981 1.8816 7 8 3.9206 3.6655 1.3239 8 8 5.0237 2.8407 3.0520 9 6 5.1253 4.1862 3.5884 10 16 4.3325 1.5675 -1.4296 11 8 5.6155 2.0857 -1.1063 12 8 3.4504 2.1949 -2.3503 13 6 4.5929 -0.0696 -2.0266 14 6 5.7340 -0.7659 -1.6581 15 6 5.9550 -2.0521 -2.1252 16 6 5.0361 -2.6567 -2.9524 17 6 3.8718 -1.9619 -3.3284 18 6 2.9210 -2.5727 -4.1782 19 1 2.2602 -1.9625 -4.7760 20 6 2.8362 -3.9679 -4.2447 21 7 3.3640 -4.7012 -3.2984 22 14 1.9694 -4.7836 -5.6845 23 1 2.9486 -5.0395 -6.7712 24 1 1.3753 -6.0700 -5.2403 25 1 0.8953 -3.8894 -6.1865 26 6 3.6608 -0.6543 -2.8527 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.6910 0.6801 1.9445 35 1 5.2262 0.9120 1.0742 36 1 5.6656 4.1602 4.5348 37 1 5.6613 4.8197 2.8817 38 1 4.1255 4.5887 3.7514 39 1 6.4580 -0.3010 -1.0054 40 1 6.8494 -2.5834 -1.8353 41 1 5.2082 -3.6604 -3.3120 42 1 3.3050 -5.6684 -3.3444 43 1 2.7705 -0.1118 -3.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:34 Heat of formation + Delta-G solvation = -144.585250 kcal Electronic energy + Delta-G solvation = -28537.196493 eV Core-core repulsion = 24481.332568 eV Total energy + Delta-G solvation = -4055.863926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47014 -37.69809 -37.23224 -36.82532 -36.04522 -35.33784 -33.88494 -32.89126 -30.11790 -29.83764 -29.17364 -27.12598 -25.52543 -25.01645 -21.97440 -21.58539 -21.12523 -20.95218 -18.73947 -18.12575 -17.77336 -17.19720 -16.78149 -16.32342 -16.01505 -15.71726 -15.24775 -14.78007 -14.54921 -14.40914 -13.86777 -13.65998 -13.50052 -13.38151 -13.24548 -12.62494 -12.53607 -12.28525 -12.17826 -11.94252 -11.88698 -11.64319 -11.46985 -11.42787 -11.39949 -11.38699 -11.13473 -11.03551 -10.92381 -10.88557 -10.66031 -10.64035 -10.40648 -9.80849 -9.64884 -9.39015 -9.00502 -8.07074 -7.74551 -6.96501 -4.57291 0.84518 2.13643 2.17620 2.59333 2.60866 2.98053 3.02077 3.04240 3.35150 3.80259 4.25105 4.37358 4.66712 4.71105 4.81148 4.97991 5.05573 5.12318 5.18056 5.26748 5.34348 5.38161 5.42520 5.53481 5.81421 5.86953 5.97593 6.00629 6.12412 6.20895 6.28005 6.41775 6.46541 6.59068 6.64105 6.72713 6.86262 7.00663 7.17254 7.33774 7.68494 7.70907 7.77285 7.90418 8.36798 8.63279 8.67937 9.98700 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.003529 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.984900 B = 7931.374163 C = 8499.804170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.119 3.881 4 N -0.983 5.983 5 C 0.137 3.863 6 C 0.443 3.557 7 O -0.497 6.497 8 O -0.361 6.361 9 C 0.035 3.965 10 S 2.684 3.316 11 O -0.970 6.970 12 O -0.961 6.961 13 C -0.630 4.630 14 C -0.150 4.150 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.123 4.123 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 6.005 11.534 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C -0.006 4.006 4 N -0.817 5.817 5 C 0.009 3.991 6 C 0.284 3.716 7 O -0.383 6.383 8 O -0.277 6.277 9 C -0.059 4.059 10 S 2.782 3.218 11 O -0.961 6.961 12 O -0.952 6.952 13 C -0.722 4.722 14 C -0.171 4.171 15 C -0.138 4.138 16 C -0.138 4.138 17 C 0.090 3.910 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.914 6.921 11.101 13.114 hybrid contribution -0.376 -1.067 -0.461 1.221 sum -1.290 5.854 10.641 12.213 Atomic orbital electron populations 1.21666 0.95223 1.02064 1.01567 1.22076 0.96293 0.96770 1.04072 1.21500 0.77336 0.97398 1.04354 1.57489 1.15462 1.89105 1.19634 1.20628 1.00510 0.90694 0.87272 1.24638 0.74597 0.93425 0.78990 1.90663 1.45012 1.41241 1.61434 1.86493 1.70440 1.33642 1.37086 1.23249 1.02483 0.81044 0.99081 1.01980 0.72634 0.75172 0.72037 1.93507 1.40163 1.78764 1.83659 1.93514 1.66178 1.74743 1.60757 1.29745 1.05137 1.22405 1.14913 1.20060 0.96719 0.95607 1.04708 1.20799 0.98747 0.94731 0.99553 1.21650 0.92816 1.00580 0.98710 1.17669 0.91966 0.90655 0.90728 1.19632 1.16436 0.91327 1.21427 0.89863 1.25926 0.94509 0.97721 0.96079 1.69780 1.35609 1.07444 1.28929 0.86256 0.80150 0.78723 0.81379 1.19147 1.20207 1.18392 1.20754 0.97379 0.97194 0.99142 0.92368 0.92266 0.93121 0.89923 0.91546 0.90535 0.88568 0.85776 0.85515 0.88161 0.91823 0.92032 0.87677 0.88330 0.85719 0.90560 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.15 -2.08 6.26 -26.73 -0.17 -2.24 16 3 C 0.12 1.66 5.67 -4.05 -0.02 1.64 16 4 N -0.98 -15.34 2.27 -115.67 -0.26 -15.60 16 5 C 0.14 1.74 5.94 -5.19 -0.03 1.71 16 6 C 0.44 6.25 8.02 36.01 0.29 6.54 16 7 O -0.50 -8.50 16.17 -18.75 -0.30 -8.81 16 8 O -0.36 -4.31 10.56 -39.24 -0.41 -4.72 16 9 C 0.04 0.32 10.56 101.05 1.07 1.39 16 10 S 2.68 52.67 5.64 -107.50 -0.61 52.06 16 11 O -0.97 -20.38 16.25 -57.17 -0.93 -21.31 16 12 O -0.96 -21.00 15.82 -57.17 -0.90 -21.91 16 13 C -0.63 -13.44 5.96 -39.66 -0.24 -13.68 16 14 C -0.15 -3.13 9.53 -39.29 -0.37 -3.51 16 15 C -0.12 -2.57 10.02 -39.66 -0.40 -2.97 16 16 C -0.12 -2.83 8.70 -38.87 -0.34 -3.17 16 17 C 0.09 2.33 5.58 -106.82 -0.60 1.73 16 18 C -0.46 -11.40 9.05 -37.74 -0.34 -11.74 16 19 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 20 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 21 N -0.79 -18.91 10.95 55.55 0.61 -18.30 16 22 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 26 C -0.12 -2.86 8.16 -38.87 -0.32 -3.17 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.10 1.45 6.91 -51.93 -0.36 1.09 16 34 H 0.12 1.12 8.11 -51.93 -0.42 0.70 16 35 H 0.13 1.50 7.61 -51.93 -0.40 1.10 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.11 1.95 7.61 -52.49 -0.40 1.55 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.13 3.06 6.15 -52.49 -0.32 2.74 16 42 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 43 H 0.11 2.49 7.60 -52.48 -0.40 2.09 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -31.22 377.42 -9.35 -40.58 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.01 Total: 6.87 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -1.19 Total: -27.14 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.35 Total: -33.91 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -2.55 Total: -56.75 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.61 Total: 52.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.22 -9.35 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.008 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds