Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 N 1.46496 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00278 * 275.00008 * 4 3 2 6 6 C 1.50701 * 109.47614 * 275.00309 * 5 4 3 7 7 O 1.20830 * 119.99330 * 359.97438 * 6 5 4 8 8 O 1.34222 * 120.00577 * 179.97438 * 6 5 4 9 9 C 1.45202 * 117.00152 * 179.97438 * 8 6 5 10 10 S 1.65598 * 120.00297 * 95.00159 * 4 3 2 11 11 O 1.42098 * 106.40579 * 156.45777 * 10 4 3 12 12 O 1.42104 * 106.40061 * 23.53963 * 10 4 3 13 13 C 1.76195 * 107.21796 * 269.99994 * 10 4 3 14 14 C 1.38662 * 119.87952 * 270.24723 * 13 10 4 15 15 C 1.38613 * 120.50337 * 180.30428 * 14 13 10 16 16 C 1.37635 * 120.24644 * 359.44170 * 15 14 13 17 17 C 1.40700 * 119.74734 * 0.27966 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46865 * 90.00477 * 22 20 18 24 24 H 1.48493 * 109.47164 * 210.00257 * 22 20 18 25 25 H 1.48499 * 109.47067 * 330.00626 * 22 20 18 26 26 C 1.37597 * 119.87685 * 90.00071 * 13 10 4 27 27 H 1.09000 * 109.47346 * 59.99144 * 1 2 3 28 28 H 1.08995 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46623 * 299.99392 * 1 2 3 30 30 H 1.09003 * 109.46777 * 239.99884 * 2 1 3 31 31 H 1.09000 * 109.47346 * 120.00856 * 2 1 3 32 32 H 1.09001 * 109.47188 * 60.00738 * 3 2 1 33 33 H 1.08992 * 109.47644 * 300.00407 * 3 2 1 34 34 H 1.09003 * 109.47285 * 35.00119 * 5 4 3 35 35 H 1.09000 * 109.47617 * 154.99741 * 5 4 3 36 36 H 1.09005 * 109.46866 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47362 * 299.99700 * 9 8 6 38 38 H 1.09004 * 109.46890 * 60.00347 * 9 8 6 39 39 H 1.07998 * 119.74547 * 0.04857 * 14 13 10 40 40 H 1.07991 * 119.87429 * 179.72331 * 15 14 13 41 41 H 1.07998 * 120.12988 * 180.25464 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.12756 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.2381 1.3316 1.2629 6 6 4.3823 2.6981 1.8816 7 8 3.9206 3.6655 1.3239 8 8 5.0237 2.8407 3.0520 9 6 5.1253 4.1862 3.5884 10 16 4.3325 1.5675 -1.4296 11 8 5.6155 2.0857 -1.1063 12 8 3.4504 2.1949 -2.3503 13 6 4.5929 -0.0696 -2.0266 14 6 5.7340 -0.7659 -1.6581 15 6 5.9550 -2.0521 -2.1252 16 6 5.0361 -2.6567 -2.9524 17 6 3.8718 -1.9619 -3.3284 18 6 2.9210 -2.5727 -4.1782 19 1 2.2602 -1.9625 -4.7760 20 6 2.8362 -3.9679 -4.2447 21 7 3.3640 -4.7012 -3.2984 22 14 1.9694 -4.7836 -5.6845 23 1 2.9486 -5.0395 -6.7712 24 1 1.3753 -6.0700 -5.2403 25 1 0.8953 -3.8894 -6.1865 26 6 3.6608 -0.6543 -2.8527 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.6910 0.6801 1.9445 35 1 5.2262 0.9120 1.0742 36 1 5.6656 4.1602 4.5348 37 1 5.6613 4.8197 2.8817 38 1 4.1255 4.5887 3.7514 39 1 6.4580 -0.3010 -1.0054 40 1 6.8494 -2.5834 -1.8353 41 1 5.2082 -3.6604 -3.3120 42 1 3.3050 -5.6684 -3.3444 43 1 2.7705 -0.1118 -3.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -163.221265 kcal Electronic energy + Delta-G solvation = -28538.004612 eV Core-core repulsion = 24481.332568 eV Total energy + Delta-G solvation = -4056.672044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51190 -39.45093 -38.47389 -38.29561 -37.16574 -36.99109 -35.65460 -33.97229 -31.89743 -31.58885 -30.15718 -27.99029 -27.32610 -26.12103 -23.67219 -22.80245 -22.64909 -22.16751 -20.26843 -19.62571 -18.89463 -18.63061 -17.89590 -17.73298 -17.33681 -16.99690 -16.88557 -16.47933 -15.93543 -15.60070 -15.21946 -15.08937 -14.82517 -14.61049 -14.29403 -14.25074 -13.83247 -13.67193 -13.46543 -13.35503 -13.15993 -13.11694 -13.05588 -12.91799 -12.81059 -12.69162 -12.63597 -12.53446 -12.27584 -12.19655 -11.79691 -11.76089 -11.56207 -11.48551 -11.32907 -11.13273 -10.26832 -9.81957 -9.53935 -8.71767 -6.43072 -0.68835 0.39415 0.86189 1.12334 1.38723 1.46707 1.50687 1.62199 1.99965 2.18606 2.57276 2.73772 3.25185 3.49154 3.60722 3.82017 4.06596 4.11126 4.30768 4.31935 4.33250 4.35062 4.40656 4.46128 4.47623 4.72340 4.74188 4.83452 4.86015 4.92040 4.96605 5.04679 5.19839 5.23830 5.31532 5.36263 5.38954 5.42974 5.54431 5.58224 5.90414 5.95459 6.12204 6.54424 6.68637 6.81491 6.86334 8.25733 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.003529 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.984900 B = 7931.374163 C = 8499.804170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.118 3.882 4 N -0.978 5.978 5 C 0.125 3.875 6 C 0.445 3.555 7 O -0.535 6.535 8 O -0.357 6.357 9 C 0.027 3.973 10 S 2.704 3.296 11 O -0.984 6.984 12 O -0.990 6.990 13 C -0.633 4.633 14 C -0.147 4.147 15 C -0.119 4.119 16 C -0.139 4.139 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.076 0.924 20 C 0.042 3.958 21 N -0.817 5.817 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.137 4.137 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.292 0.708 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 5.774 13.590 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C -0.006 4.006 4 N -0.815 5.815 5 C -0.001 4.001 6 C 0.287 3.713 7 O -0.424 6.424 8 O -0.273 6.273 9 C -0.066 4.066 10 S 2.799 3.201 11 O -0.974 6.974 12 O -0.980 6.980 13 C -0.723 4.723 14 C -0.167 4.167 15 C -0.138 4.138 16 C -0.159 4.159 17 C 0.064 3.936 18 C -0.525 4.525 19 H 0.094 0.906 20 C -0.174 4.174 21 N -0.442 5.442 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.158 4.158 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.186 0.814 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.723 6.669 13.171 14.781 hybrid contribution -0.361 -0.882 -0.919 1.324 sum -1.083 5.787 12.252 13.593 Atomic orbital electron populations 1.21665 0.93887 1.02282 1.02545 1.22038 0.97505 0.96187 1.03188 1.21635 0.76245 0.97793 1.04923 1.57157 1.16062 1.88815 1.19431 1.21095 1.01557 0.90973 0.86507 1.24832 0.73917 0.93324 0.79234 1.90658 1.46782 1.42440 1.62516 1.86484 1.69576 1.35180 1.36014 1.23567 1.03234 0.79642 1.00195 1.01283 0.72220 0.74076 0.72490 1.93481 1.41201 1.78627 1.84077 1.93474 1.66776 1.75054 1.62732 1.30071 1.04772 1.23318 1.14124 1.20462 0.96742 0.95319 1.04205 1.21131 0.99130 0.95146 0.98412 1.21663 0.93532 1.00464 1.00233 1.17981 0.92628 0.91614 0.91417 1.19824 1.17429 0.92528 1.22722 0.90602 1.26643 0.95010 0.97583 0.98181 1.69803 1.36267 1.08080 1.30079 0.85255 0.78958 0.77893 0.78012 1.18796 1.18926 1.18491 1.20749 0.97983 0.97037 1.00078 0.93049 0.92429 0.90526 0.93493 0.89676 0.87645 0.90267 0.81406 0.84368 0.84601 0.92745 0.91646 0.84787 0.85300 0.86823 0.89726 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.15 -3.93 6.26 30.59 0.19 -3.73 16 3 C 0.12 3.16 5.67 86.38 0.49 3.65 16 4 N -0.98 -29.13 2.27 -519.87 -1.18 -30.31 16 5 C 0.13 2.83 5.94 85.63 0.51 3.34 16 6 C 0.44 11.53 8.02 71.24 0.57 12.10 16 7 O -0.53 -17.58 16.17 21.95 0.35 -17.23 16 8 O -0.36 -7.56 10.56 -51.34 -0.54 -8.10 16 9 C 0.03 0.42 10.56 113.37 1.20 1.62 16 10 S 2.70 105.23 5.64 -56.49 -0.32 104.91 16 11 O -0.98 -40.26 16.25 -128.00 -2.08 -42.34 16 12 O -0.99 -44.13 15.82 -128.00 -2.02 -46.16 16 13 C -0.63 -27.03 5.96 22.22 0.13 -26.90 16 14 C -0.15 -5.94 9.53 22.46 0.21 -5.73 16 15 C -0.12 -5.05 10.02 22.22 0.22 -4.82 16 16 C -0.14 -6.82 8.70 22.73 0.20 -6.62 16 17 C 0.07 3.45 5.58 -21.29 -0.12 3.34 16 18 C -0.50 -25.67 9.05 23.46 0.21 -25.46 16 19 H 0.08 3.86 7.91 -2.91 -0.02 3.84 16 20 C 0.04 2.00 5.14 85.25 0.44 2.44 16 21 N -0.82 -39.58 10.95 21.83 0.24 -39.34 16 22 Si 0.98 36.46 29.60 68.60 2.03 38.49 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 C -0.14 -6.59 8.16 22.73 0.19 -6.40 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.05 1.58 7.00 -2.39 -0.02 1.56 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 33 H 0.08 2.40 6.91 -2.39 -0.02 2.38 16 34 H 0.17 2.31 8.11 -2.39 -0.02 2.29 16 35 H 0.14 2.84 7.61 -2.39 -0.02 2.82 16 36 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 38 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 39 H 0.13 4.61 7.61 -2.91 -0.02 4.59 16 40 H 0.13 4.57 8.06 -2.92 -0.02 4.55 16 41 H 0.11 5.73 6.15 -2.91 -0.02 5.71 16 42 H 0.29 12.71 8.30 -92.70 -0.77 11.94 16 43 H 0.11 5.03 7.60 -2.91 -0.02 5.00 16 Total: -1.00 -69.33 377.42 2.65 -66.68 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.02 Total: 29.12 kcal Atomic # 6 Polarization: -60.89 SS G_CDS: 5.16 Total: -55.73 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -0.94 Total: -69.65 kcal Atomic # 8 Polarization: -109.53 SS G_CDS: -4.29 Total: -113.83 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 105.23 SS G_CDS: -0.32 Total: 104.91 kcal Total: -69.33 2.65 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.543 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds