Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.52995 * 109.47382 * 174.32153 * 3 2 1 5 5 N 1.46498 * 109.47254 * 54.31640 * 3 2 1 6 6 S 1.65610 * 119.99510 * 65.66084 * 5 3 2 7 7 O 1.42103 * 106.40053 * 186.52425 * 6 5 3 8 8 O 1.42098 * 106.40137 * 319.44058 * 6 5 3 9 9 C 1.76196 * 107.21649 * 72.98281 * 6 5 3 10 10 C 1.38654 * 119.87380 * 256.14402 * 9 6 5 11 11 C 1.38615 * 120.50076 * 179.72754 * 10 9 6 12 12 C 1.37643 * 120.24711 * 0.54656 * 11 10 9 13 13 C 1.40690 * 119.74159 * 359.73471 * 12 11 10 14 14 C 1.41401 * 120.24460 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00588 * 209.43463 * 14 13 12 16 16 C 1.39953 * 119.99743 * 29.42772 * 14 13 12 17 17 N 1.30817 * 119.99932 * 9.91111 * 16 14 13 18 18 Si 1.86806 * 119.99806 * 189.91201 * 16 14 13 19 19 H 1.48502 * 109.46885 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.46885 * 120.00016 * 18 16 14 21 21 H 1.48498 * 109.46561 * 240.00011 * 18 16 14 22 22 C 1.37600 * 119.87699 * 76.42164 * 9 6 5 23 23 C 1.50705 * 109.47069 * 294.32157 * 3 2 1 24 24 O 1.20826 * 119.99873 * 265.00360 * 23 3 2 25 25 O 1.34226 * 120.00136 * 84.99597 * 23 3 2 26 26 C 1.45198 * 117.00261 * 180.02562 * 25 23 3 27 27 H 1.08993 * 109.47040 * 59.99926 * 1 2 3 28 28 H 1.08996 * 109.46821 * 300.00135 * 1 2 3 29 29 H 1.09000 * 109.46504 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47303 * 119.99619 * 2 1 3 31 31 H 1.09002 * 109.47495 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.47301 * 72.53631 * 4 3 2 33 33 H 1.08998 * 109.47547 * 192.53418 * 4 3 2 34 34 H 1.08999 * 109.47237 * 312.54040 * 4 3 2 35 35 H 0.96997 * 120.00868 * 245.65984 * 5 3 2 36 36 H 1.08005 * 119.75207 * 0.02562 * 10 9 6 37 37 H 1.08005 * 119.87773 * 180.25697 * 11 10 9 38 38 H 1.08004 * 120.12558 * 179.70231 * 12 11 10 39 39 H 0.97002 * 120.00150 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.12819 * 359.97305 * 22 9 6 41 41 H 1.09001 * 109.47069 * 180.02562 * 26 25 23 42 42 H 1.09000 * 109.46818 * 300.00480 * 26 25 23 43 43 H 1.08994 * 109.47012 * 59.99985 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4449 0.1427 5 7 1.4432 2.1715 1.1219 6 16 1.8126 1.7425 2.6782 7 8 0.9715 2.5202 3.5191 8 8 1.8409 0.3221 2.7070 9 6 3.4615 2.2795 2.9899 10 6 4.4976 1.3581 3.0002 11 6 5.8004 1.7671 3.2384 12 6 6.0777 3.0937 3.4787 13 6 5.0335 4.0366 3.4764 14 6 5.3064 5.4022 3.7215 15 1 4.5566 6.0287 4.1814 16 6 6.5484 5.9419 3.3681 17 7 7.3819 5.2437 2.6408 18 14 7.0158 7.6593 3.9352 19 1 5.9070 8.2343 4.7384 20 1 8.2447 7.5890 4.7658 21 1 7.2670 8.5201 2.7514 22 6 3.7154 3.6108 3.2277 23 6 1.6557 2.1112 -1.2948 24 8 2.4377 2.1394 -2.2154 25 8 0.4447 2.6752 -1.4253 26 6 0.1427 3.3007 -2.7003 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.0161 1.1049 -0.7887 33 1 3.9058 2.4554 0.3655 34 1 3.8534 0.7760 0.9530 35 1 0.8318 2.9053 0.9532 36 1 4.2886 0.3145 2.8166 37 1 6.6004 1.0414 3.2400 38 1 7.0929 3.4095 3.6688 39 1 8.2429 5.6176 2.3961 40 1 2.9064 4.3262 3.2232 41 1 -0.8643 3.7167 -2.6715 42 1 0.8599 4.0987 -2.8924 43 1 0.2062 2.5564 -3.4941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -159.836617 kcal Electronic energy + Delta-G solvation = -29144.129175 eV Core-core repulsion = 25087.603901 eV Total energy + Delta-G solvation = -4056.525275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97766 -39.51543 -38.82119 -37.94934 -37.51600 -36.90219 -35.63610 -32.74929 -31.96474 -31.66575 -30.58425 -28.95773 -27.32903 -25.51921 -23.94292 -23.61691 -22.80910 -21.41217 -20.40772 -19.57208 -19.54665 -18.54237 -17.83584 -17.69213 -17.38115 -16.91222 -16.62044 -16.40411 -15.64501 -15.34046 -15.24209 -15.05474 -14.87631 -14.65379 -14.28378 -14.12335 -14.04193 -13.64054 -13.36679 -13.26058 -13.20366 -13.14596 -13.04751 -12.98437 -12.90671 -12.69713 -12.48943 -12.46761 -12.33674 -12.20658 -11.93588 -11.77446 -11.51989 -11.41396 -11.24502 -11.15649 -10.69358 -9.79107 -9.44789 -8.65940 -6.45294 -0.55908 0.42277 0.86219 0.94512 1.37434 1.43431 1.51314 1.51933 2.03369 2.18595 2.59309 2.76328 3.35287 3.38334 3.56722 3.65373 3.82568 3.98599 4.29468 4.32404 4.33325 4.38305 4.44959 4.55420 4.64217 4.71414 4.73070 4.86495 4.93054 4.95329 5.07377 5.09759 5.12561 5.23342 5.25789 5.29564 5.43490 5.45932 5.56836 5.89269 5.92059 5.98132 6.13347 6.55775 6.56046 6.83908 6.87335 8.31084 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.004080 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.923445 B = 6860.476703 C = 7685.923329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.205 3.795 4 C -0.185 4.185 5 N -1.098 6.098 6 S 2.720 3.280 7 O -0.991 6.991 8 O -0.962 6.962 9 C -0.642 4.642 10 C -0.132 4.132 11 C -0.125 4.125 12 C -0.129 4.129 13 C 0.061 3.939 14 C -0.500 4.500 15 H 0.076 0.924 16 C 0.035 3.965 17 N -0.832 5.832 18 Si 0.981 3.019 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.267 1.267 22 C -0.135 4.135 23 C 0.480 3.520 24 O -0.519 6.519 25 O -0.351 6.351 26 C 0.024 3.976 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.430 0.570 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.107 0.893 41 H 0.135 0.865 42 H 0.058 0.942 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -6.221 -8.789 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.115 3.885 4 C -0.243 4.243 5 N -0.860 5.860 6 S 2.812 3.188 7 O -0.982 6.982 8 O -0.952 6.952 9 C -0.731 4.731 10 C -0.152 4.152 11 C -0.144 4.144 12 C -0.149 4.149 13 C 0.058 3.942 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.192 1.192 22 C -0.156 4.156 23 C 0.321 3.679 24 O -0.407 6.407 25 O -0.267 6.267 26 C -0.068 4.068 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.267 0.733 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.153 0.847 42 H 0.077 0.923 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.311 -6.744 -8.619 15.036 hybrid contribution 1.084 1.857 -0.219 2.162 sum -9.227 -4.886 -8.839 13.680 Atomic orbital electron populations 1.21780 0.93730 1.03035 1.02232 1.22502 0.98627 0.91470 1.06728 1.20190 0.94343 0.93207 0.80716 1.22710 0.91445 1.04321 1.05779 1.55420 1.60184 1.48589 1.21806 1.00901 0.73191 0.73115 0.71546 1.93529 1.66816 1.72561 1.65251 1.93462 1.87291 1.28526 1.85915 1.30247 1.22424 1.02122 1.18340 1.20511 0.91795 0.98063 1.04872 1.21162 0.96727 0.95667 1.00846 1.21679 0.99637 0.92452 1.01138 1.18010 0.91687 0.94139 0.90340 1.19849 1.00389 0.95213 1.37601 0.90622 1.26655 0.95058 1.03828 0.92302 1.69785 1.08735 1.39869 1.27526 0.85155 0.79036 0.76584 0.78967 1.18381 1.18833 1.19209 1.20844 0.97280 0.93467 1.04041 1.23488 0.79845 0.75105 0.89457 1.90673 1.51912 1.56040 1.42040 1.86501 1.33593 1.66220 1.40358 1.23641 1.03792 0.97552 0.81844 0.91841 0.93170 0.90488 0.86609 0.88607 0.88528 0.92184 0.88768 0.73267 0.84080 0.85479 0.87079 0.90099 0.87500 0.84689 0.92312 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.43 71.98 0.68 -2.37 16 2 C -0.15 -3.54 4.53 30.59 0.14 -3.40 16 3 C 0.21 5.49 0.77 2.86 0.00 5.50 16 4 C -0.18 -5.52 6.76 71.98 0.49 -5.04 16 5 N -1.10 -30.77 4.47 -155.19 -0.69 -31.46 16 6 S 2.72 93.20 5.34 -56.49 -0.30 92.90 16 7 O -0.99 -39.51 17.68 -128.00 -2.26 -41.77 16 8 O -0.96 -32.25 13.72 -128.00 -1.76 -34.00 16 9 C -0.64 -26.13 4.27 22.22 0.09 -26.04 16 10 C -0.13 -5.15 7.26 22.46 0.16 -4.98 16 11 C -0.12 -5.25 10.02 22.22 0.22 -5.03 16 12 C -0.13 -6.38 8.65 22.73 0.20 -6.18 16 13 C 0.06 3.17 5.55 -21.29 -0.12 3.06 16 14 C -0.50 -26.28 9.06 23.46 0.21 -26.07 16 15 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 16 C 0.04 1.73 5.27 85.26 0.45 2.18 16 17 N -0.83 -41.91 10.84 21.83 0.24 -41.68 16 18 Si 0.98 37.58 29.57 68.60 2.03 39.61 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 22 C -0.14 -6.36 9.28 22.73 0.21 -6.15 16 23 C 0.48 12.77 6.19 71.24 0.44 13.21 16 24 O -0.52 -16.09 15.58 21.96 0.34 -15.75 16 25 O -0.35 -7.67 8.51 -51.38 -0.44 -8.11 16 26 C 0.02 0.38 10.56 113.37 1.20 1.58 16 27 H 0.06 1.17 6.55 -2.39 -0.02 1.15 16 28 H 0.05 1.09 7.46 -2.39 -0.02 1.07 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.12 2.88 5.54 -2.39 -0.01 2.86 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 2.69 7.39 -2.38 -0.02 2.67 16 33 H 0.06 2.10 7.64 -2.39 -0.02 2.09 16 34 H 0.09 2.75 4.74 -2.39 -0.01 2.73 16 35 H 0.43 10.58 7.99 -96.75 -0.77 9.81 16 36 H 0.14 4.66 6.78 -2.91 -0.02 4.64 16 37 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.11 5.73 6.25 -2.91 -0.02 5.71 16 39 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 40 H 0.11 4.85 7.95 -2.91 -0.02 4.83 16 41 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 1.00 8.13 -2.39 -0.02 0.99 16 43 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 Total: -1.00 -64.47 357.82 1.81 -62.65 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.28 Total: 37.34 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 4.38 Total: -59.73 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -0.46 Total: -73.14 kcal Atomic # 8 Polarization: -95.52 SS G_CDS: -4.11 Total: -99.63 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 93.20 SS G_CDS: -0.30 Total: 92.90 kcal Total: -64.47 1.81 -62.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.183 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds