Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99410 * 2 1 4 4 O 1.20827 * 120.00577 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99850 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47321 * 204.99966 * 5 3 2 7 7 C 1.52998 * 109.47047 * 84.99830 * 5 3 2 8 8 N 1.46497 * 109.46866 * 324.99947 * 5 3 2 9 9 C 1.46500 * 120.00075 * 116.28668 * 8 5 3 10 10 S 1.65602 * 120.00150 * 296.28725 * 8 5 3 11 11 O 1.42101 * 106.40279 * 149.51859 * 10 8 5 12 12 O 1.42090 * 106.40029 * 16.59572 * 10 8 5 13 13 C 1.76207 * 107.21529 * 263.05713 * 10 8 5 14 14 C 1.38663 * 119.87438 * 275.02498 * 13 10 8 15 15 C 1.38608 * 120.49788 * 180.25798 * 14 13 10 16 16 C 1.37644 * 120.24817 * 359.44899 * 15 14 13 17 17 C 1.40696 * 119.74508 * 0.27247 * 16 15 14 18 18 C 1.41397 * 120.24463 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00058 * 208.92984 * 18 17 16 20 20 C 1.39944 * 119.99785 * 28.92777 * 18 17 16 21 21 N 1.30823 * 120.00172 * 11.80617 * 20 18 17 22 22 Si 1.86798 * 119.99727 * 191.80707 * 20 18 17 23 23 H 1.48499 * 109.47245 * 59.99609 * 22 20 18 24 24 H 1.48503 * 109.47428 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47130 * 300.00123 * 22 20 18 26 26 C 1.37596 * 119.87431 * 94.72883 * 13 10 8 27 27 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47202 * 299.99917 * 1 2 3 29 29 H 1.08999 * 109.47227 * 60.00011 * 1 2 3 30 30 H 1.09002 * 109.47345 * 178.38471 * 6 5 3 31 31 H 1.09004 * 109.47229 * 298.38621 * 6 5 3 32 32 H 1.08999 * 109.47502 * 58.38295 * 6 5 3 33 33 H 1.09008 * 109.47074 * 301.29988 * 7 5 3 34 34 H 1.08998 * 109.47128 * 61.29424 * 7 5 3 35 35 H 1.09000 * 109.47513 * 181.29828 * 7 5 3 36 36 H 1.08999 * 109.47535 * 270.00143 * 9 8 5 37 37 H 1.09003 * 109.47201 * 29.99453 * 9 8 5 38 38 H 1.09002 * 109.47477 * 149.99987 * 9 8 5 39 39 H 1.07997 * 119.74786 * 0.02562 * 14 13 10 40 40 H 1.07998 * 119.87715 * 179.71797 * 15 14 13 41 41 H 1.08005 * 120.12505 * 180.25701 * 16 15 14 42 42 H 0.97006 * 119.99793 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.12916 * 0.04397 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0068 2.6073 0.6101 7 6 4.0827 1.1759 -1.4362 8 7 4.1128 0.1709 0.7933 9 6 4.9417 -0.8520 0.1507 10 16 3.7937 0.0790 2.4156 11 8 3.7877 -1.3031 2.7458 12 8 2.6899 0.9406 2.6568 13 6 5.1702 0.7859 3.2587 14 6 6.2825 0.0070 3.5393 15 6 7.3701 0.5483 4.2066 16 6 7.3615 1.8708 4.5882 17 6 6.2406 2.6721 4.3035 18 6 6.2202 4.0318 4.6912 19 1 5.2807 4.5158 4.9136 20 6 7.4173 4.7501 4.7866 21 7 8.5230 4.2463 4.3017 22 14 7.4366 6.4285 5.6065 23 1 6.9839 6.2967 7.0147 24 1 8.8164 6.9767 5.5799 25 1 6.5246 7.3461 4.8773 26 6 5.1396 2.1103 3.6306 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.0956 2.6524 0.6368 31 1 3.6240 3.4285 0.0039 32 1 3.6148 2.6906 1.6237 33 1 3.7494 0.2368 -1.8781 34 1 3.6944 2.0102 -2.0202 35 1 5.1722 1.2098 -1.4339 36 1 4.3068 -1.6632 -0.2056 37 1 5.4748 -0.4112 -0.6917 38 1 5.6603 -1.2427 0.8712 39 1 6.2999 -1.0302 3.2391 40 1 8.2294 -0.0687 4.4240 41 1 8.2118 2.2916 5.1043 42 1 9.3529 4.7442 4.3683 43 1 4.2739 2.7162 3.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619481524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -129.093497 kcal Electronic energy + Delta-G solvation = -29438.885146 eV Core-core repulsion = 25383.692993 eV Total energy + Delta-G solvation = -4055.192153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63396 -37.74665 -37.48862 -36.77693 -36.27051 -35.35516 -33.83788 -31.74100 -30.10852 -29.88920 -28.08765 -27.91976 -25.65161 -25.50116 -23.26274 -21.89110 -21.04705 -20.39880 -18.89620 -18.27585 -17.42386 -16.87144 -16.70620 -16.07575 -15.85568 -15.59091 -15.16942 -14.83342 -14.47961 -14.24244 -13.54794 -13.48582 -13.41842 -13.22632 -12.96594 -12.71509 -12.63030 -12.26580 -12.12602 -11.98336 -11.93748 -11.79865 -11.65759 -11.55376 -11.48372 -11.39314 -11.34489 -11.02944 -10.93466 -10.79930 -10.70490 -10.63887 -10.48363 -9.79805 -9.62972 -9.39779 -8.92842 -8.06799 -7.69282 -6.89729 -4.57314 0.86105 2.13402 2.27477 2.60847 2.72434 2.99702 3.02858 3.06116 3.33580 3.83486 4.19582 4.39333 4.56512 4.63957 4.71073 4.90435 5.10455 5.13054 5.23879 5.35943 5.38983 5.47900 5.55226 5.64976 5.72853 5.79641 5.84961 5.91028 6.00663 6.10637 6.11811 6.40181 6.48607 6.53308 6.67070 6.73105 6.85961 7.03622 7.17989 7.32864 7.67152 7.79475 7.83756 7.91192 8.38204 8.65390 8.69729 10.05727 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.004130 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.249224 B = 6778.321998 C = 7488.330321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.460 3.540 4 O -0.492 6.492 5 C 0.201 3.799 6 C -0.177 4.177 7 C -0.148 4.148 8 N -0.991 5.991 9 C 0.088 3.912 10 S 2.682 3.318 11 O -0.966 6.966 12 O -0.966 6.966 13 C -0.634 4.634 14 C -0.144 4.144 15 C -0.122 4.122 16 C -0.110 4.110 17 C 0.093 3.907 18 C -0.462 4.462 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.802 5.802 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.120 4.120 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.283 0.717 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 -6.057 -10.689 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.300 3.700 4 O -0.377 6.377 5 C 0.111 3.889 6 C -0.235 4.235 7 C -0.206 4.206 8 N -0.829 5.829 9 C -0.057 4.057 10 S 2.780 3.220 11 O -0.957 6.957 12 O -0.956 6.956 13 C -0.726 4.726 14 C -0.165 4.165 15 C -0.142 4.142 16 C -0.130 4.130 17 C 0.090 3.910 18 C -0.491 4.491 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.428 5.428 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.141 4.141 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.512 -6.084 -10.401 13.251 hybrid contribution 0.638 1.133 0.460 1.380 sum -4.873 -4.951 -9.941 12.128 Atomic orbital electron populations 1.23284 0.76655 1.03546 1.02650 1.86510 1.23268 1.33499 1.83966 1.24135 0.91981 0.81663 0.72184 1.90633 1.66423 1.36250 1.44403 1.20023 0.84657 0.88923 0.95254 1.22549 1.03563 0.93528 1.03817 1.22119 1.03171 1.03611 0.91730 1.57747 1.65139 1.33792 1.26200 1.21606 0.94387 0.89994 0.99672 1.02032 0.74728 0.73551 0.71703 1.93512 1.87417 1.32591 1.82139 1.93522 1.50664 1.67760 1.83672 1.29748 1.17393 1.05548 1.19943 1.20073 0.93626 0.97404 1.05374 1.20821 0.97029 0.95914 1.00394 1.21676 1.00017 0.91712 0.99552 1.17683 0.90789 0.93313 0.89266 1.19574 0.94039 0.94985 1.40539 0.90013 1.25890 0.94874 1.00418 0.93079 1.69734 1.00456 1.38711 1.33901 0.86274 0.78190 0.81102 0.80692 1.18765 1.20265 1.18823 1.20895 1.00197 0.92131 1.00879 0.88247 0.91499 0.92039 0.89233 0.89540 0.89416 0.90763 0.90396 0.89278 0.92120 0.90223 0.90661 0.87779 0.88264 0.85634 0.90610 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.50 10.27 -39.25 -0.40 -5.91 16 3 C 0.46 7.68 4.93 36.01 0.18 7.86 16 4 O -0.49 -9.14 15.88 -18.75 -0.30 -9.43 16 5 C 0.20 2.98 1.00 -132.97 -0.13 2.84 16 6 C -0.18 -2.83 7.47 37.15 0.28 -2.55 16 7 C -0.15 -1.51 7.18 37.16 0.27 -1.25 16 8 N -0.99 -15.47 2.82 -108.95 -0.31 -15.78 16 9 C 0.09 1.05 9.51 59.85 0.57 1.62 16 10 S 2.68 52.96 4.86 -107.50 -0.52 52.44 16 11 O -0.97 -20.37 16.73 -57.17 -0.96 -21.32 16 12 O -0.97 -20.96 13.37 -57.17 -0.76 -21.72 16 13 C -0.63 -13.76 5.96 -39.66 -0.24 -14.00 16 14 C -0.14 -3.04 9.53 -39.29 -0.37 -3.42 16 15 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 16 C -0.11 -2.66 8.66 -38.87 -0.34 -3.00 16 17 C 0.09 2.35 5.54 -106.82 -0.59 1.76 16 18 C -0.46 -11.65 9.06 -37.74 -0.34 -11.99 16 19 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 20 C 0.07 1.77 5.23 -17.34 -0.09 1.68 16 21 N -0.80 -19.44 10.91 55.55 0.61 -18.83 16 22 Si 0.91 17.98 29.57 -169.99 -5.03 12.95 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 26 C -0.12 -2.82 8.42 -38.87 -0.33 -3.15 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.09 1.65 4.06 -51.93 -0.21 1.43 16 33 H 0.07 0.65 7.74 -51.92 -0.40 0.25 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.77 6.97 -51.93 -0.36 0.41 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.71 5.69 -51.93 -0.30 0.42 16 38 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 39 H 0.10 1.96 7.72 -52.49 -0.41 1.56 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.13 3.11 6.27 -52.48 -0.33 2.78 16 42 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 43 H 0.11 2.62 5.98 -52.49 -0.31 2.31 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -31.42 362.19 -8.34 -39.76 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.65 Total: 7.59 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.47 Total: -25.20 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.30 Total: -34.61 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -2.42 Total: -58.38 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.52 Total: 52.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.42 -8.34 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.331 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds