Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99410 * 2 1 4 4 O 1.20827 * 120.00577 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99850 * 179.97438 * 3 2 1 6 6 C 1.52992 * 109.47321 * 204.99966 * 5 3 2 7 7 C 1.52998 * 109.47047 * 84.99830 * 5 3 2 8 8 N 1.46497 * 109.46866 * 324.99947 * 5 3 2 9 9 C 1.46500 * 120.00075 * 116.28668 * 8 5 3 10 10 S 1.65602 * 120.00150 * 296.28725 * 8 5 3 11 11 O 1.42101 * 106.40279 * 149.51859 * 10 8 5 12 12 O 1.42090 * 106.40029 * 16.59572 * 10 8 5 13 13 C 1.76207 * 107.21529 * 263.05713 * 10 8 5 14 14 C 1.38663 * 119.87438 * 275.02498 * 13 10 8 15 15 C 1.38608 * 120.49788 * 180.25798 * 14 13 10 16 16 C 1.37644 * 120.24817 * 359.44899 * 15 14 13 17 17 C 1.40696 * 119.74508 * 0.27247 * 16 15 14 18 18 C 1.41397 * 120.24463 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00058 * 208.92984 * 18 17 16 20 20 C 1.39944 * 119.99785 * 28.92777 * 18 17 16 21 21 N 1.30823 * 120.00172 * 11.80617 * 20 18 17 22 22 Si 1.86798 * 119.99727 * 191.80707 * 20 18 17 23 23 H 1.48499 * 109.47245 * 59.99609 * 22 20 18 24 24 H 1.48503 * 109.47428 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47130 * 300.00123 * 22 20 18 26 26 C 1.37596 * 119.87431 * 94.72883 * 13 10 8 27 27 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47202 * 299.99917 * 1 2 3 29 29 H 1.08999 * 109.47227 * 60.00011 * 1 2 3 30 30 H 1.09002 * 109.47345 * 178.38471 * 6 5 3 31 31 H 1.09004 * 109.47229 * 298.38621 * 6 5 3 32 32 H 1.08999 * 109.47502 * 58.38295 * 6 5 3 33 33 H 1.09008 * 109.47074 * 301.29988 * 7 5 3 34 34 H 1.08998 * 109.47128 * 61.29424 * 7 5 3 35 35 H 1.09000 * 109.47513 * 181.29828 * 7 5 3 36 36 H 1.08999 * 109.47535 * 270.00143 * 9 8 5 37 37 H 1.09003 * 109.47201 * 29.99453 * 9 8 5 38 38 H 1.09002 * 109.47477 * 149.99987 * 9 8 5 39 39 H 1.07997 * 119.74786 * 0.02562 * 14 13 10 40 40 H 1.07998 * 119.87715 * 179.71797 * 15 14 13 41 41 H 1.08005 * 120.12505 * 180.25701 * 16 15 14 42 42 H 0.97006 * 119.99793 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.12916 * 0.04397 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0068 2.6073 0.6101 7 6 4.0827 1.1759 -1.4362 8 7 4.1128 0.1709 0.7933 9 6 4.9417 -0.8520 0.1507 10 16 3.7937 0.0790 2.4156 11 8 3.7877 -1.3031 2.7458 12 8 2.6899 0.9406 2.6568 13 6 5.1702 0.7859 3.2587 14 6 6.2825 0.0070 3.5393 15 6 7.3701 0.5483 4.2066 16 6 7.3615 1.8708 4.5882 17 6 6.2406 2.6721 4.3035 18 6 6.2202 4.0318 4.6912 19 1 5.2807 4.5158 4.9136 20 6 7.4173 4.7501 4.7866 21 7 8.5230 4.2463 4.3017 22 14 7.4366 6.4285 5.6065 23 1 6.9839 6.2967 7.0147 24 1 8.8164 6.9767 5.5799 25 1 6.5246 7.3461 4.8773 26 6 5.1396 2.1103 3.6306 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 5.0956 2.6524 0.6368 31 1 3.6240 3.4285 0.0039 32 1 3.6148 2.6906 1.6237 33 1 3.7494 0.2368 -1.8781 34 1 3.6944 2.0102 -2.0202 35 1 5.1722 1.2098 -1.4339 36 1 4.3068 -1.6632 -0.2056 37 1 5.4748 -0.4112 -0.6917 38 1 5.6603 -1.2427 0.8712 39 1 6.2999 -1.0302 3.2391 40 1 8.2294 -0.0687 4.4240 41 1 8.2118 2.2916 5.1043 42 1 9.3529 4.7442 4.3683 43 1 4.2739 2.7162 3.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619481524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -148.850579 kcal Electronic energy + Delta-G solvation = -29439.741877 eV Core-core repulsion = 25383.692993 eV Total energy + Delta-G solvation = -4056.048884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85670 -39.49027 -38.72242 -38.34395 -37.52723 -36.99684 -35.63600 -32.88433 -31.89739 -31.65482 -29.05036 -28.97835 -27.33235 -26.74627 -24.41303 -23.61854 -22.82132 -21.66826 -20.27544 -19.87085 -18.92781 -18.18365 -17.92843 -17.76355 -17.17939 -17.02671 -16.69573 -16.51887 -15.88884 -15.34830 -15.24327 -15.11034 -14.59864 -14.39750 -14.23589 -14.16092 -13.76966 -13.66437 -13.54956 -13.34861 -13.20177 -13.17816 -13.03691 -13.00963 -12.95666 -12.81645 -12.74881 -12.64413 -12.58701 -12.24323 -12.00139 -11.84917 -11.73289 -11.52781 -11.34133 -11.16241 -10.18659 -9.82985 -9.51471 -8.68046 -6.46307 -0.67174 0.37259 0.84287 1.01904 1.38121 1.46450 1.48665 1.59651 1.94589 2.18870 2.57771 2.67984 3.24702 3.43914 3.49973 3.55260 3.81463 3.94025 4.25267 4.26863 4.28742 4.38572 4.56082 4.61711 4.62825 4.67212 4.69141 4.83509 4.84256 4.89527 4.93093 4.99054 5.03868 5.14450 5.20532 5.24516 5.30688 5.39628 5.48038 5.55101 5.86934 5.95193 6.10640 6.53009 6.60801 6.80977 6.85186 8.29319 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.004130 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.249224 B = 6778.321998 C = 7488.330321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.362 6.362 3 C 0.455 3.545 4 O -0.521 6.521 5 C 0.197 3.803 6 C -0.179 4.179 7 C -0.145 4.145 8 N -0.983 5.983 9 C 0.071 3.929 10 S 2.699 3.301 11 O -0.979 6.979 12 O -0.991 6.991 13 C -0.640 4.640 14 C -0.140 4.140 15 C -0.122 4.122 16 C -0.130 4.130 17 C 0.065 3.935 18 C -0.500 4.500 19 H 0.074 0.926 20 C 0.040 3.960 21 N -0.826 5.826 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.134 4.134 27 H 0.134 0.866 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.291 0.709 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -7.239 -12.526 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.409 6.409 5 C 0.108 3.892 6 C -0.237 4.237 7 C -0.203 4.203 8 N -0.823 5.823 9 C -0.072 4.072 10 S 2.795 3.205 11 O -0.969 6.969 12 O -0.982 6.982 13 C -0.730 4.730 14 C -0.161 4.161 15 C -0.141 4.141 16 C -0.150 4.150 17 C 0.062 3.938 18 C -0.529 4.529 19 H 0.092 0.908 20 C -0.175 4.175 21 N -0.452 5.452 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.188 1.188 25 H -0.187 1.187 26 C -0.155 4.155 27 H 0.152 0.848 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.839 -7.295 -12.222 15.034 hybrid contribution 0.355 1.360 0.947 1.695 sum -4.484 -5.935 -11.275 13.507 Atomic orbital electron populations 1.23619 0.75019 1.05874 1.02611 1.86490 1.25002 1.32825 1.83536 1.24560 0.92792 0.81621 0.71368 1.90614 1.67207 1.37159 1.45890 1.20232 0.83798 0.87600 0.97620 1.22540 1.03582 0.95273 1.02288 1.22230 1.04410 1.05338 0.88291 1.57456 1.65539 1.34897 1.24388 1.22051 0.94618 0.89834 1.00660 1.01432 0.73685 0.72675 0.72705 1.93488 1.87346 1.32863 1.83208 1.93490 1.51587 1.68345 1.84759 1.30148 1.18434 1.04842 1.19610 1.20484 0.92941 0.98608 1.04070 1.21160 0.98293 0.95238 0.99404 1.21679 0.99604 0.92929 1.00757 1.18001 0.91853 0.93892 0.90042 1.19771 0.94637 0.95730 1.42802 0.90830 1.26609 0.94072 1.03735 0.93038 1.69765 1.00997 1.40179 1.34240 0.85285 0.78706 0.76633 0.79359 1.18758 1.18785 1.18677 1.20876 0.99811 0.93203 1.01593 0.84794 0.93216 0.90502 0.88948 0.88402 0.92746 0.88663 0.89194 0.87215 0.90358 0.86615 0.90721 0.84877 0.85124 0.86750 0.89836 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -10.66 10.27 -51.39 -0.53 -11.19 16 3 C 0.46 14.79 4.93 71.24 0.35 15.14 16 4 O -0.52 -19.42 15.88 21.96 0.35 -19.07 16 5 C 0.20 5.51 1.00 2.86 0.00 5.51 16 6 C -0.18 -5.73 7.47 71.98 0.54 -5.19 16 7 C -0.14 -2.44 7.18 71.98 0.52 -1.93 16 8 N -0.98 -28.78 2.82 -498.61 -1.41 -30.18 16 9 C 0.07 1.45 9.51 127.77 1.21 2.67 16 10 S 2.70 105.17 4.86 -56.49 -0.27 104.90 16 11 O -0.98 -39.90 16.73 -128.00 -2.14 -42.05 16 12 O -0.99 -43.95 13.37 -128.00 -1.71 -45.67 16 13 C -0.64 -27.85 5.96 22.22 0.13 -27.72 16 14 C -0.14 -5.77 9.53 22.46 0.21 -5.55 16 15 C -0.12 -5.21 10.02 22.22 0.22 -4.99 16 16 C -0.13 -6.43 8.66 22.73 0.20 -6.23 16 17 C 0.07 3.42 5.54 -21.29 -0.12 3.31 16 18 C -0.50 -26.36 9.06 23.46 0.21 -26.15 16 19 H 0.07 3.83 7.87 -2.91 -0.02 3.80 16 20 C 0.04 1.96 5.23 85.26 0.45 2.40 16 21 N -0.83 -40.63 10.91 21.83 0.24 -40.39 16 22 Si 0.98 37.26 29.57 68.60 2.03 39.29 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 C -0.13 -6.54 8.42 22.73 0.19 -6.35 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.10 2.81 7.93 -2.38 -0.02 2.79 16 32 H 0.05 2.12 4.06 -2.39 -0.01 2.11 16 33 H 0.09 1.25 7.74 -2.38 -0.02 1.23 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.42 6.97 -2.39 -0.02 1.40 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.52 5.69 -2.39 -0.01 1.51 16 38 H 0.07 1.55 7.96 -2.39 -0.02 1.53 16 39 H 0.13 4.65 7.72 -2.91 -0.02 4.62 16 40 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 41 H 0.11 5.83 6.27 -2.91 -0.02 5.81 16 42 H 0.29 12.93 8.30 -92.70 -0.77 12.16 16 43 H 0.11 5.23 5.98 -2.91 -0.02 5.22 16 Total: -1.00 -70.58 362.19 2.90 -67.67 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 1.03 Total: 30.08 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 5.32 Total: -53.39 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.17 Total: -70.58 kcal Atomic # 8 Polarization: -113.94 SS G_CDS: -4.03 Total: -117.98 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 105.17 SS G_CDS: -0.27 Total: 104.90 kcal Total: -70.58 2.90 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.178 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds