Wall clock time and date at job start Sat Apr 11 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99507 * 2 1 4 4 O 1.20823 * 119.99928 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99791 * 180.02562 * 3 2 1 6 6 N 1.46493 * 109.47179 * 179.97438 * 5 3 2 7 7 C 1.46504 * 119.99988 * 272.58084 * 6 5 3 8 8 C 1.53000 * 109.47017 * 299.99881 * 7 6 5 9 9 C 1.52995 * 109.46925 * 60.00327 * 7 6 5 10 10 S 1.65605 * 120.00181 * 92.58168 * 6 5 3 11 11 O 1.42099 * 106.40310 * 211.11660 * 10 6 5 12 12 O 1.42102 * 106.40183 * 344.03615 * 10 6 5 13 13 C 1.76201 * 107.21809 * 97.57603 * 10 6 5 14 14 C 1.37638 * 120.12650 * 114.02234 * 13 10 6 15 15 C 1.38620 * 120.24290 * 179.97438 * 14 13 10 16 16 C 1.38651 * 120.50608 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.24797 * 0.02895 * 16 15 14 18 18 C 1.40703 * 120.12699 * 293.74560 * 13 10 6 19 19 C 1.41397 * 120.24169 * 359.97438 * 18 13 10 20 20 H 1.07991 * 120.00438 * 325.71340 * 19 18 13 21 21 C 1.39944 * 119.99484 * 145.71512 * 19 18 13 22 22 N 1.30829 * 119.99849 * 168.89853 * 21 19 18 23 23 Si 1.86801 * 120.00505 * 348.89884 * 21 19 18 24 24 H 1.48496 * 109.47132 * 89.34668 * 23 21 19 25 25 H 1.48503 * 109.47112 * 209.35156 * 23 21 19 26 26 H 1.48510 * 109.46632 * 329.34578 * 23 21 19 27 27 H 1.09006 * 109.46821 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47349 * 300.00185 * 1 2 3 29 29 H 1.09002 * 109.47511 * 60.00970 * 1 2 3 30 30 H 1.09000 * 109.47609 * 59.99339 * 5 3 2 31 31 H 1.09009 * 109.46817 * 299.99534 * 5 3 2 32 32 H 1.09000 * 109.46896 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47100 * 60.00354 * 8 7 6 34 34 H 1.09002 * 109.47024 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.47148 * 299.99882 * 8 7 6 36 36 H 1.08992 * 109.47565 * 59.99727 * 9 7 6 37 37 H 1.09002 * 109.47125 * 180.02562 * 9 7 6 38 38 H 1.09000 * 109.47157 * 299.99624 * 9 7 6 39 39 H 1.07995 * 119.87949 * 359.97438 * 14 13 10 40 40 H 1.08006 * 119.74098 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.87776 * 180.02562 * 16 15 14 42 42 H 1.07998 * 120.12591 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99855 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.1339 3.3982 -1.2688 8 6 5.1909 2.7000 -2.1267 9 6 2.7974 3.4076 -2.0134 10 16 4.2787 3.4560 1.4313 11 8 3.9370 4.8201 1.2271 12 8 3.6984 2.6536 2.4504 13 6 6.0203 3.4136 1.6959 14 6 6.7495 4.5809 1.6837 15 6 8.1196 4.5504 1.8921 16 6 8.7711 3.3468 2.1144 17 6 8.0623 2.1675 2.1297 18 6 6.6699 2.1870 1.9263 19 6 5.9301 0.9822 1.9473 20 1 4.9217 0.9744 2.3338 21 6 6.5047 -0.2002 1.4674 22 7 5.9148 -1.3481 1.6818 23 14 8.1139 -0.1395 0.5207 24 1 9.2508 -0.2488 1.4696 25 1 8.1637 -1.2677 -0.4436 26 1 8.2061 1.1463 -0.2166 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7808 0.8893 32 1 4.4468 4.4232 -1.0702 33 1 4.8784 1.6748 -2.3254 34 1 5.3040 3.2342 -3.0701 35 1 6.1431 2.6933 -1.5961 36 1 2.0444 3.9050 -1.4022 37 1 2.9109 3.9417 -2.9568 38 1 2.4849 2.3825 -2.2121 39 1 6.2524 5.5240 1.5112 40 1 8.6838 5.4712 1.8813 41 1 9.8388 3.3349 2.2760 42 1 8.5719 1.2311 2.3026 43 1 6.3133 -2.1677 1.3495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572723.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:48 Heat of formation + Delta-G solvation = -133.883793 kcal Electronic energy + Delta-G solvation = -30238.061103 eV Core-core repulsion = 26182.661227 eV Total energy + Delta-G solvation = -4055.399876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13076 -37.98789 -37.26025 -36.48818 -35.71852 -34.95780 -33.93827 -31.57901 -30.79439 -30.19830 -28.35807 -26.86410 -26.28741 -25.44441 -22.18242 -21.37347 -21.25886 -20.34693 -18.27315 -17.87179 -17.54244 -17.29965 -16.51945 -16.32158 -15.91957 -15.38717 -15.23906 -14.46272 -14.29100 -13.84144 -13.81423 -13.58555 -13.42644 -13.16539 -12.94321 -12.86639 -12.46247 -12.21197 -12.16256 -11.93106 -11.76807 -11.65318 -11.38653 -11.32523 -11.19110 -11.16460 -11.04709 -10.85504 -10.77442 -10.55232 -10.46447 -10.29235 -10.11402 -10.03832 -9.58768 -9.31392 -8.68800 -8.31823 -7.90204 -7.23408 -4.98158 1.28514 1.98953 2.43608 2.61146 2.89291 2.98175 3.03765 3.07602 3.67644 3.72198 4.17640 4.65413 4.91595 5.01659 5.19637 5.22390 5.27161 5.35147 5.44020 5.44821 5.58050 5.67818 5.75255 5.83663 5.84794 5.88896 6.00207 6.08055 6.08819 6.15843 6.33292 6.36472 6.55366 6.59973 6.61362 6.74473 6.86995 6.98668 7.02275 7.20244 7.35325 7.47347 7.74328 8.04784 8.14751 8.21940 8.43952 9.73282 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.006596 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.511554 B = 4244.227557 C = 5269.670254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.445 3.555 4 O -0.505 6.505 5 C 0.125 3.875 6 N -0.969 5.969 7 C 0.145 3.855 8 C -0.166 4.166 9 C -0.153 4.153 10 S 2.704 3.296 11 O -0.985 6.985 12 O -0.963 6.963 13 C -0.766 4.766 14 C 0.015 3.985 15 C -0.252 4.252 16 C -0.044 4.044 17 C -0.234 4.234 18 C 0.172 3.828 19 C -0.474 4.474 20 H 0.132 0.868 21 C 0.090 3.910 22 N -0.779 5.779 23 Si 0.904 3.096 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.241 1.241 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 0.577 -7.943 8.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.286 3.714 4 O -0.392 6.392 5 C -0.003 4.003 6 N -0.803 5.803 7 C 0.039 3.961 8 C -0.225 4.225 9 C -0.212 4.212 10 S 2.803 3.197 11 O -0.976 6.976 12 O -0.954 6.954 13 C -0.860 4.860 14 C -0.005 4.005 15 C -0.272 4.272 16 C -0.063 4.063 17 C -0.254 4.254 18 C 0.167 3.833 19 C -0.501 4.501 20 H 0.150 0.850 21 C -0.133 4.133 22 N -0.401 5.401 23 Si 0.730 3.270 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.164 1.164 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.176 0.824 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.896 0.941 -7.430 8.030 hybrid contribution 1.333 -0.363 -0.455 1.455 sum -1.563 0.578 -7.885 8.059 Atomic orbital electron populations 1.23187 0.77267 1.03190 1.02205 1.86554 1.22729 1.33741 1.84278 1.24882 0.93354 0.81301 0.71883 1.90607 1.67130 1.36238 1.45237 1.21112 0.85709 0.84072 1.09366 1.57415 1.81239 1.19634 1.22047 1.20827 0.95702 0.95997 0.83588 1.22215 0.99688 1.00958 0.99606 1.22167 0.97464 1.01777 0.99752 1.01188 0.74542 0.72049 0.71954 1.93450 1.84088 1.34421 1.85653 1.93503 1.77446 1.69600 1.54842 1.30024 1.23956 1.00054 1.31972 1.20423 0.93958 0.95573 0.90535 1.20550 0.94402 0.96803 1.15471 1.20871 0.97866 0.93175 0.94355 1.21322 0.95396 0.97183 1.11450 1.17095 0.91459 0.90973 0.83813 1.20355 1.04418 0.90469 1.34837 0.85034 1.26167 0.98607 0.94282 0.94272 1.69641 1.38395 0.99216 1.32799 0.86438 0.81047 0.79580 0.79912 1.19211 1.21249 1.16372 0.88483 0.92024 0.92358 0.86700 0.82403 0.88457 0.92237 0.91872 0.91309 0.90940 0.92401 0.93258 0.86758 0.87945 0.88152 0.87271 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.36 -5.94 10.57 -39.27 -0.41 -6.35 16 3 C 0.44 8.20 6.89 36.00 0.25 8.44 16 4 O -0.50 -10.02 13.53 -18.75 -0.25 -10.27 16 5 C 0.12 2.29 5.01 -5.20 -0.03 2.27 16 6 N -0.97 -18.39 2.30 -108.58 -0.25 -18.64 16 7 C 0.14 2.31 3.21 -67.93 -0.22 2.09 16 8 C -0.17 -2.28 9.17 37.16 0.34 -1.94 16 9 C -0.15 -2.23 7.83 37.16 0.29 -1.94 16 10 S 2.70 60.12 5.06 -107.50 -0.54 59.58 16 11 O -0.99 -22.66 15.79 -57.17 -0.90 -23.56 16 12 O -0.96 -24.00 14.60 -57.17 -0.83 -24.84 16 13 C -0.77 -17.20 5.97 -38.87 -0.23 -17.44 16 14 C 0.01 0.31 9.54 -39.66 -0.38 -0.07 16 15 C -0.25 -4.91 10.05 -39.29 -0.39 -5.31 16 16 C -0.04 -0.87 10.02 -39.66 -0.40 -1.27 16 17 C -0.23 -5.15 7.09 -38.87 -0.28 -5.43 16 18 C 0.17 4.00 5.07 -106.82 -0.54 3.46 16 19 C -0.47 -11.30 6.74 -37.74 -0.25 -11.55 16 20 H 0.13 3.39 4.42 -52.49 -0.23 3.16 16 21 C 0.09 2.03 5.47 -17.34 -0.09 1.93 16 22 N -0.78 -17.76 13.93 55.55 0.77 -16.98 16 23 Si 0.90 18.01 24.46 -169.99 -4.16 13.85 16 24 H -0.27 -5.25 6.55 56.52 0.37 -4.88 16 25 H -0.29 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.24 -4.85 6.86 56.52 0.39 -4.46 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.12 1.77 6.43 -51.93 -0.33 1.44 16 31 H 0.16 3.29 4.26 -51.92 -0.22 3.07 16 32 H 0.10 1.56 7.13 -51.93 -0.37 1.19 16 33 H 0.06 0.76 6.67 -51.93 -0.35 0.42 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.21 7.06 -51.93 -0.37 0.84 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 39 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 40 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 2.34 4.62 -52.49 -0.24 2.10 16 43 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -29.11 351.23 -7.57 -36.67 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.41 Total: 10.47 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -0.87 Total: -25.23 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.52 Total: -35.62 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -2.41 Total: -65.02 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.16 Total: 13.85 kcal Atomic # 16 Polarization: 60.12 SS G_CDS: -0.54 Total: 59.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.11 -7.57 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572723.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.211 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds