Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50702 * 109.47607 * 120.00026 * 2 1 3 5 5 O 1.21277 * 119.99960 * 119.99379 * 4 2 1 6 6 N 1.34769 * 119.99776 * 300.00784 * 4 2 1 7 7 C 1.46508 * 120.00011 * 179.97438 * 6 4 2 8 8 C 1.50695 * 109.47103 * 179.97438 * 7 6 4 9 9 C 1.38299 * 119.93247 * 90.00118 * 8 7 6 10 10 C 1.38101 * 120.07425 * 179.97438 * 9 8 7 11 11 C 1.38886 * 119.92536 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47375 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.47301 * 239.99793 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38106 * 119.92542 * 359.44577 * 21 11 10 23 23 S 1.81402 * 109.47140 * 240.00411 * 2 1 3 24 24 C 1.81399 * 101.92192 * 59.99854 * 23 2 1 25 25 O 1.42102 * 108.57848 * 174.48618 * 23 2 1 26 26 O 1.42097 * 108.57776 * 305.50947 * 23 2 1 27 27 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 28 28 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 29 29 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 32 32 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 33 33 H 0.97001 * 120.00514 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.46632 * 59.99915 * 7 6 4 35 35 H 1.08996 * 109.47144 * 299.99646 * 7 6 4 36 36 H 1.07999 * 119.96503 * 0.02562 * 9 8 7 37 37 H 1.07992 * 120.03608 * 180.02562 * 10 9 8 38 38 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 40 40 H 1.07997 * 119.96326 * 180.27708 * 22 21 11 41 41 H 1.08996 * 109.46918 * 60.00226 * 24 23 2 42 42 H 1.08997 * 109.46799 * 179.97438 * 24 23 2 43 43 H 1.08998 * 109.46884 * 299.99841 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6507 8 6 1.6929 -0.2302 4.8811 9 6 0.4841 -0.5961 5.4447 10 6 0.0217 0.0529 6.5725 11 6 0.7718 1.0744 7.1406 12 8 0.3202 1.7139 8.2496 13 6 -0.8052 1.2348 8.8169 14 1 -1.3496 0.4318 8.3424 15 6 -1.2638 1.7732 10.0096 16 7 -0.6005 2.7510 10.5880 17 14 -2.8226 1.1089 10.7959 18 1 -3.3759 0.0182 9.9536 19 1 -2.5087 0.5803 12.1476 20 1 -3.8228 2.2005 10.9113 21 6 1.9822 1.4438 6.5688 22 6 2.4418 0.7871 5.4442 23 16 2.1346 -0.8550 -1.4812 24 6 1.4228 0.1516 -2.8118 25 8 3.5496 -0.7329 -1.5285 26 8 1.5479 -2.1484 -1.5286 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.1493 0.5388 2.5436 34 1 3.2847 -0.9412 3.6508 35 1 1.8311 -1.9685 3.6506 36 1 -0.0985 -1.3909 5.0027 37 1 -0.9221 -0.2337 7.0123 38 1 -0.9214 3.1279 11.4222 39 1 2.5656 2.2408 7.0056 40 1 3.3852 1.0709 5.0016 41 1 1.7893 1.1748 -2.7291 42 1 1.7159 -0.2620 -3.7767 43 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733147164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -107.739918 kcal Electronic energy + Delta-G solvation = -27115.554926 eV Core-core repulsion = 23061.288734 eV Total energy + Delta-G solvation = -4054.266192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.32273 -39.16386 -37.27062 -37.00092 -36.25160 -35.63612 -34.52210 -32.42414 -30.37425 -30.15722 -29.70723 -28.03800 -26.11510 -25.07157 -23.87953 -22.13173 -20.88948 -20.71940 -18.96772 -18.17849 -18.06160 -17.09754 -17.04927 -16.19832 -16.12601 -15.60388 -15.53574 -14.84154 -14.76013 -14.56031 -14.15280 -13.92783 -13.76595 -13.66846 -13.61400 -13.51850 -13.39339 -12.87521 -12.83573 -12.71002 -12.66951 -12.28699 -12.27299 -12.16240 -11.91566 -11.74330 -11.48742 -11.33506 -11.06443 -10.90184 -10.79062 -10.75524 -10.52213 -10.17424 -9.49623 -9.18334 -8.97592 -8.36541 -7.40856 -6.58996 -4.17918 -0.42971 1.95163 2.05404 2.26179 2.35539 2.87328 3.04435 3.06055 3.11323 3.54687 3.59848 3.85221 4.02825 4.05035 4.27131 4.35956 4.47419 4.58779 4.83826 4.91349 4.95235 5.02265 5.06227 5.07818 5.15330 5.20165 5.33337 5.49530 5.54936 5.58090 5.72066 5.81759 6.04948 6.26242 6.27278 6.52122 6.72540 6.87961 7.06001 7.18922 7.27395 7.29259 7.63770 7.85601 7.89446 8.86362 9.53695 10.58417 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.002068 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.885178 B =13534.055630 C =13765.228984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.579 4.579 3 C -0.140 4.140 4 C 0.545 3.455 5 O -0.534 6.534 6 N -0.703 5.703 7 C 0.176 3.824 8 C -0.218 4.218 9 C -0.049 4.049 10 C -0.237 4.237 11 C 0.161 3.839 12 O -0.172 6.172 13 C -0.394 4.394 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.858 5.858 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.195 4.195 22 C -0.053 4.053 23 S 2.453 3.547 24 C -0.665 4.665 25 O -0.921 6.921 26 O -0.921 6.921 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.271 0.729 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -0.948 -22.904 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.668 4.668 3 C -0.198 4.198 4 C 0.328 3.672 5 O -0.412 6.412 6 N -0.354 5.354 7 C 0.054 3.946 8 C -0.220 4.220 9 C -0.068 4.068 10 C -0.256 4.256 11 C 0.106 3.894 12 O -0.074 6.074 13 C -0.470 4.470 14 H 0.112 0.888 15 C -0.165 4.165 16 N -0.492 5.492 17 Si 0.767 3.233 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.215 4.215 22 C -0.072 4.072 23 S 2.630 3.370 24 C -0.814 4.814 25 O -0.918 6.918 26 O -0.918 6.918 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.437 -2.050 -22.627 22.765 hybrid contribution -1.677 0.867 0.631 1.990 sum -0.240 -1.183 -21.996 22.029 Atomic orbital electron populations 1.21818 0.87643 1.05066 1.05301 1.30513 1.08380 1.10805 1.17143 1.21820 1.03160 0.89538 1.05302 1.19086 0.80313 0.83850 0.83948 1.90849 1.38085 1.25897 1.86327 1.46160 1.52570 1.31826 1.04844 1.20115 0.98785 0.95117 0.80590 1.19162 0.98745 1.03712 1.00332 1.20649 0.94301 0.97373 0.94506 1.21163 1.02980 1.01601 0.99891 1.19449 0.91989 0.90164 0.87778 1.83978 1.40388 1.48969 1.34111 1.21412 1.00104 1.19796 1.05656 0.88825 1.25337 0.99518 0.96088 0.95538 1.70040 1.38340 1.23101 1.17715 0.85619 0.79669 0.78784 0.79211 1.19022 1.20005 1.20047 1.20215 0.96500 1.05079 0.99659 1.20540 0.98006 0.94210 0.94454 1.07427 0.76030 0.76366 0.77197 1.30455 1.14363 1.16938 1.19658 1.93577 1.26535 1.86526 1.85177 1.93576 1.79392 1.33676 1.85172 0.89467 0.90127 0.89749 0.89739 0.90125 0.89469 0.76023 0.90989 0.91031 0.87342 0.85371 0.91858 0.86330 0.86900 0.84981 0.84869 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.12 37.16 0.30 -0.49 16 2 C -0.58 -4.82 0.72 -91.77 -0.07 -4.88 16 3 C -0.14 -0.78 8.12 37.16 0.30 -0.48 16 4 C 0.55 6.86 6.50 -10.99 -0.07 6.78 16 5 O -0.53 -9.03 15.62 2.56 0.04 -8.99 16 6 N -0.70 -8.07 5.33 -61.47 -0.33 -8.40 16 7 C 0.18 2.34 5.80 -5.19 -0.03 2.31 16 8 C -0.22 -3.30 5.25 -104.58 -0.55 -3.85 16 9 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 10 C -0.24 -4.72 9.17 -39.39 -0.36 -5.08 16 11 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 12 O -0.17 -4.65 9.76 0.05 0.00 -4.65 16 13 C -0.39 -10.46 9.49 30.89 0.29 -10.17 16 14 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 15 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -24.20 13.67 55.48 0.76 -23.45 16 17 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.20 -3.77 9.99 -39.39 -0.39 -4.17 16 22 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 23 S 2.45 24.08 3.65 -107.50 -0.39 23.69 16 24 C -0.67 -2.64 9.72 101.05 0.98 -1.66 16 25 O -0.92 -12.48 17.76 -59.53 -1.06 -13.54 16 26 O -0.92 -12.52 17.76 -59.53 -1.06 -13.58 16 27 H 0.09 0.44 7.56 -51.93 -0.39 0.04 16 28 H 0.08 0.18 6.56 -51.93 -0.34 -0.16 16 29 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.08 0.17 6.56 -51.93 -0.34 -0.17 16 32 H 0.09 0.43 7.56 -51.93 -0.39 0.03 16 33 H 0.40 3.81 7.30 -40.82 -0.30 3.52 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.13 2.58 5.64 -52.49 -0.30 2.29 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.13 0.23 6.87 -51.93 -0.36 -0.13 16 42 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.13 0.23 6.87 -51.93 -0.36 -0.13 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -36.73 371.85 -7.72 -44.45 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.55 Total: 4.03 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -0.72 Total: -19.79 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.43 Total: -31.84 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.07 Total: -40.76 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 24.08 SS G_CDS: -0.39 Total: 23.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.73 -7.72 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733147164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.292 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds