Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.50702 * 109.47607 * 120.00026 * 2 1 3 5 5 O 1.21277 * 119.99960 * 119.99379 * 4 2 1 6 6 N 1.34769 * 119.99776 * 300.00784 * 4 2 1 7 7 C 1.46508 * 120.00011 * 179.97438 * 6 4 2 8 8 C 1.50695 * 109.47103 * 179.97438 * 7 6 4 9 9 C 1.38299 * 119.93247 * 90.00118 * 8 7 6 10 10 C 1.38101 * 120.07425 * 179.97438 * 9 8 7 11 11 C 1.38886 * 119.92536 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47375 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.47301 * 239.99793 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38106 * 119.92542 * 359.44577 * 21 11 10 23 23 S 1.81402 * 109.47140 * 240.00411 * 2 1 3 24 24 C 1.81399 * 101.92192 * 59.99854 * 23 2 1 25 25 O 1.42102 * 108.57848 * 174.48618 * 23 2 1 26 26 O 1.42097 * 108.57776 * 305.50947 * 23 2 1 27 27 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 28 28 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 29 29 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 32 32 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 33 33 H 0.97001 * 120.00514 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.46632 * 59.99915 * 7 6 4 35 35 H 1.08996 * 109.47144 * 299.99646 * 7 6 4 36 36 H 1.07999 * 119.96503 * 0.02562 * 9 8 7 37 37 H 1.07992 * 120.03608 * 180.02562 * 10 9 8 38 38 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 40 40 H 1.07997 * 119.96326 * 180.27708 * 22 21 11 41 41 H 1.08996 * 109.46918 * 60.00226 * 24 23 2 42 42 H 1.08997 * 109.46799 * 179.97438 * 24 23 2 43 43 H 1.08998 * 109.46884 * 299.99841 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1947 -0.9410 3.6507 8 6 1.6929 -0.2302 4.8811 9 6 0.4841 -0.5961 5.4447 10 6 0.0217 0.0529 6.5725 11 6 0.7718 1.0744 7.1406 12 8 0.3202 1.7139 8.2496 13 6 -0.8052 1.2348 8.8169 14 1 -1.3496 0.4318 8.3424 15 6 -1.2638 1.7732 10.0096 16 7 -0.6005 2.7510 10.5880 17 14 -2.8226 1.1089 10.7959 18 1 -3.3759 0.0182 9.9536 19 1 -2.5087 0.5803 12.1476 20 1 -3.8228 2.2005 10.9113 21 6 1.9822 1.4438 6.5688 22 6 2.4418 0.7871 5.4442 23 16 2.1346 -0.8550 -1.4812 24 6 1.4228 0.1516 -2.8118 25 8 3.5496 -0.7329 -1.5285 26 8 1.5479 -2.1484 -1.5286 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.1493 0.5388 2.5436 34 1 3.2847 -0.9412 3.6508 35 1 1.8311 -1.9685 3.6506 36 1 -0.0985 -1.3909 5.0027 37 1 -0.9221 -0.2337 7.0123 38 1 -0.9214 3.1279 11.4222 39 1 2.5656 2.2408 7.0056 40 1 3.3852 1.0709 5.0016 41 1 1.7893 1.1748 -2.7291 42 1 1.7159 -0.2620 -3.7767 43 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733147164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -137.367100 kcal Electronic energy + Delta-G solvation = -27116.839657 eV Core-core repulsion = 23061.288734 eV Total energy + Delta-G solvation = -4055.550923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36569 -40.73355 -38.57595 -38.08225 -37.05809 -36.39812 -35.66186 -34.27636 -31.86984 -31.38743 -30.27285 -28.43073 -27.74413 -26.50840 -24.68215 -23.67130 -22.27982 -21.72516 -19.93599 -19.74913 -19.03917 -18.66896 -17.87265 -16.96507 -16.95107 -16.66647 -16.59539 -16.28202 -16.12743 -15.83377 -15.55222 -15.25893 -14.98037 -14.51568 -14.39661 -14.15576 -14.15043 -14.05040 -13.91954 -13.65853 -13.33363 -13.28119 -13.18779 -13.06872 -13.05695 -12.94750 -12.59829 -12.44128 -12.37043 -12.31137 -12.09953 -11.95282 -11.45197 -11.21999 -11.12182 -10.81694 -10.25572 -9.83794 -9.04374 -8.49672 -6.17741 -1.06772 0.49894 0.55298 1.32116 1.35880 1.42669 1.53477 1.73343 1.96549 2.15979 2.75593 2.91043 2.98437 3.13584 3.39023 3.47013 3.57232 3.69326 3.81069 3.99250 4.09670 4.14889 4.21961 4.39842 4.53934 4.56546 4.57126 4.59417 4.69177 4.69714 4.77525 4.92781 5.01065 5.12751 5.16361 5.18020 5.23518 5.23932 5.49674 5.67080 5.71429 6.00160 6.12335 6.29916 6.95423 6.95998 7.74106 8.73223 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.002068 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.885178 B =13534.055630 C =13765.228984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.563 4.563 3 C -0.147 4.147 4 C 0.536 3.464 5 O -0.584 6.584 6 N -0.694 5.694 7 C 0.178 3.822 8 C -0.184 4.184 9 C -0.044 4.044 10 C -0.242 4.242 11 C 0.124 3.876 12 O -0.228 6.228 13 C -0.412 4.412 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.918 5.918 17 Si 1.018 2.982 18 H -0.251 1.251 19 H -0.271 1.271 20 H -0.268 1.268 21 C -0.203 4.203 22 C -0.042 4.042 23 S 2.421 3.579 24 C -0.630 4.630 25 O -0.978 6.978 26 O -0.978 6.978 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.273 0.727 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.147 0.853 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -0.422 -26.314 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.655 4.655 3 C -0.205 4.205 4 C 0.322 3.678 5 O -0.466 6.466 6 N -0.345 5.345 7 C 0.055 3.945 8 C -0.185 4.185 9 C -0.062 4.062 10 C -0.262 4.262 11 C 0.073 3.927 12 O -0.134 6.134 13 C -0.488 4.488 14 H 0.121 0.879 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.837 3.163 18 H -0.174 1.174 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.222 4.222 22 C -0.060 4.060 23 S 2.606 3.394 24 C -0.784 4.784 25 O -0.975 6.975 26 O -0.976 6.976 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.063 -1.570 -26.068 26.115 hybrid contribution -1.023 0.634 1.309 1.778 sum -1.086 -0.936 -24.759 24.800 Atomic orbital electron populations 1.22032 0.85216 1.05061 1.08172 1.30376 1.10120 1.11447 1.13528 1.22036 1.02487 0.87764 1.08185 1.19855 0.79366 0.83338 0.85289 1.90834 1.40288 1.28271 1.87162 1.45925 1.52466 1.31981 1.04129 1.20003 0.99042 0.95076 0.80338 1.19401 0.97376 1.01828 0.99867 1.20927 0.94823 0.97347 0.93144 1.21235 1.02670 1.01370 1.00877 1.19997 0.93590 0.91547 0.87534 1.83950 1.41512 1.51364 1.36546 1.21865 1.00513 1.20216 1.06243 0.87853 1.26575 1.03158 0.96307 0.95908 1.70178 1.41030 1.25616 1.18763 0.84536 0.75142 0.78509 0.78100 1.17387 1.19611 1.19296 1.20437 0.95716 1.05485 1.00590 1.20869 0.99007 0.93270 0.92897 1.07849 0.75384 0.76989 0.79163 1.30189 1.15938 1.16629 1.15671 1.93508 1.30187 1.87493 1.86322 1.93507 1.79660 1.38063 1.86325 0.88409 0.85555 0.91262 0.91196 0.85565 0.88377 0.74506 0.90691 0.90939 0.84353 0.86137 0.91780 0.86600 0.83523 0.81492 0.83445 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.12 71.98 0.58 -0.47 16 2 C -0.56 -7.81 0.72 -11.54 -0.01 -7.82 16 3 C -0.15 -1.03 8.12 71.98 0.58 -0.45 16 4 C 0.54 12.75 6.50 87.66 0.57 13.32 16 5 O -0.58 -20.01 15.62 -0.15 0.00 -20.01 16 6 N -0.69 -14.11 5.33 -466.80 -2.49 -16.60 16 7 C 0.18 4.29 5.80 85.63 0.50 4.79 16 8 C -0.18 -5.05 5.25 -19.84 -0.10 -5.16 16 9 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 10 C -0.24 -9.60 9.17 22.39 0.21 -9.40 16 11 C 0.12 5.73 6.65 22.58 0.15 5.88 16 12 O -0.23 -13.01 9.76 -22.72 -0.22 -13.23 16 13 C -0.41 -22.91 9.49 67.92 0.64 -22.26 16 14 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 15 C -0.02 -1.18 5.49 84.84 0.47 -0.71 16 16 N -0.92 -54.60 13.67 21.62 0.30 -54.30 16 17 Si 1.02 41.22 29.55 68.60 2.03 43.25 16 18 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 21 C -0.20 -7.84 9.99 22.39 0.22 -7.62 16 22 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 23 S 2.42 44.27 3.65 -56.49 -0.21 44.06 16 24 C -0.63 -1.64 9.72 113.37 1.10 -0.54 16 25 O -0.98 -26.89 17.76 -125.75 -2.23 -29.12 16 26 O -0.98 -27.00 17.76 -125.75 -2.23 -29.23 16 27 H 0.10 0.53 7.56 -2.39 -0.02 0.51 16 28 H 0.13 -0.27 6.56 -2.39 -0.02 -0.28 16 29 H 0.07 0.75 8.06 -2.38 -0.02 0.73 16 30 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 31 H 0.13 -0.28 6.56 -2.39 -0.02 -0.30 16 32 H 0.10 0.51 7.56 -2.38 -0.02 0.49 16 33 H 0.42 6.38 7.30 -92.71 -0.68 5.70 16 34 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 38 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.17 -0.61 6.87 -2.39 -0.02 -0.63 16 42 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.17 -0.60 6.87 -2.39 -0.02 -0.61 16 Total: -1.00 -91.07 371.85 0.66 -90.42 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.37 Total: 17.36 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 5.35 Total: -32.59 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -2.19 Total: -70.90 kcal Atomic # 8 Polarization: -86.90 SS G_CDS: -4.69 Total: -91.59 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 44.27 SS G_CDS: -0.21 Total: 44.06 kcal Total: -91.07 0.66 -90.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733147164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.950 kcal (2) G-P(sol) polarization free energy of solvation -91.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds