Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35760 * 116.99630 * 2 1 4 4 C 1.37978 * 123.48562 * 0.21125 * 3 2 1 5 5 C 1.33641 * 115.09657 * 180.29690 * 4 3 2 6 6 C 1.50705 * 124.41791 * 179.76259 * 5 4 3 7 7 S 1.70575 * 111.16145 * 359.72835 * 5 4 3 8 8 C 1.37391 * 123.47706 * 180.02562 * 3 2 1 9 9 C 1.41475 * 125.48053 * 359.97438 * 8 3 2 10 10 O 1.21705 * 119.99909 * 359.72156 * 9 8 3 11 11 O 1.34970 * 120.00084 * 179.44898 * 9 8 3 12 12 C 1.42899 * 117.00137 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47264 * 329.99873 * 12 11 9 14 14 C 1.53003 * 109.47268 * 89.99979 * 12 11 9 15 15 C 1.50703 * 109.47252 * 209.99748 * 12 11 9 16 16 O 1.21281 * 119.99841 * 359.97438 * 15 12 11 17 17 N 1.34780 * 119.99773 * 180.02562 * 15 12 11 18 18 C 1.46499 * 120.00196 * 359.97438 * 17 15 12 19 19 C 1.46504 * 119.99385 * 180.02562 * 17 15 12 20 20 C 1.50699 * 109.47003 * 90.00074 * 19 17 15 21 21 H 1.08004 * 120.00264 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99859 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99957 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48491 * 109.46985 * 120.00098 * 24 22 20 27 27 H 1.48500 * 109.46669 * 240.00254 * 24 22 20 28 28 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47000 * 300.00698 * 1 2 3 30 30 H 1.09002 * 109.46657 * 60.00481 * 1 2 3 31 31 H 1.08001 * 122.45407 * 0.02689 * 4 3 2 32 32 H 1.09003 * 109.46886 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47241 * 299.98644 * 6 5 4 34 34 H 1.08999 * 109.46755 * 59.98967 * 6 5 4 35 35 H 1.08994 * 109.47374 * 180.02562 * 14 12 11 36 36 H 1.09002 * 109.46636 * 300.00128 * 14 12 11 37 37 H 1.08998 * 109.47065 * 59.99772 * 14 12 11 38 38 H 1.08996 * 109.46716 * 90.00070 * 18 17 15 39 39 H 1.09001 * 109.46833 * 210.00013 * 18 17 15 40 40 H 1.08995 * 109.46862 * 330.00326 * 18 17 15 41 41 H 1.09004 * 109.46965 * 209.99656 * 19 17 15 42 42 H 1.08997 * 109.47574 * 329.99989 * 19 17 15 43 43 H 0.97002 * 119.99499 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.3655 2.4104 0.0042 5 6 2.1393 3.4999 -0.0027 6 6 1.6190 4.9143 -0.0051 7 16 3.7928 3.0808 -0.0077 8 6 3.4104 1.3647 -0.0005 9 6 4.3564 0.3127 -0.0006 10 8 3.9795 -0.8445 0.0049 11 8 5.6767 0.5924 -0.0124 12 6 6.5753 -0.5187 -0.0123 13 1 6.1157 -1.3576 0.5103 14 6 6.8851 -0.9243 -1.4547 15 6 7.8533 -0.1312 0.6860 16 8 7.9822 0.9866 1.1386 17 7 8.8535 -1.0266 0.8067 18 6 8.6980 -2.3767 0.2595 19 6 10.0957 -0.6500 1.4860 20 6 9.9785 -0.9609 2.9559 21 1 9.0695 -1.3951 3.3453 22 6 11.0317 -0.6909 3.8037 23 7 12.1384 -0.1616 3.3297 24 14 10.8867 -1.0769 5.6257 25 1 9.5508 -1.6634 5.9026 26 1 11.9424 -2.0473 6.0116 27 1 11.0518 0.1726 6.4110 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2869 2.4657 0.0083 32 1 2.4581 5.6101 -0.0106 33 1 1.0076 5.0750 -0.8930 34 1 1.0151 5.0807 0.8870 35 1 7.5701 -1.7721 -1.4546 36 1 5.9606 -1.2046 -1.9597 37 1 7.3446 -0.0854 -1.9772 38 1 9.0518 -2.3938 -0.7713 39 1 9.2805 -3.0794 0.8553 40 1 7.6462 -2.6611 0.2874 41 1 10.9271 -1.2123 1.0609 42 1 10.2732 0.4172 1.3534 43 1 12.8792 0.0286 3.9263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733839044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = -112.178565 kcal Electronic energy + Delta-G solvation = -27412.552490 eV Core-core repulsion = 23358.093824 eV Total energy + Delta-G solvation = -4054.458666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81288 -40.00620 -38.72665 -36.71828 -36.16804 -34.87640 -32.90067 -32.35541 -31.33758 -28.48150 -27.71095 -27.35618 -26.15196 -24.41064 -23.58728 -22.87122 -21.53554 -19.56516 -18.86862 -18.78770 -17.20855 -16.99769 -16.47282 -16.40501 -16.14866 -15.73539 -15.58878 -15.14134 -14.57460 -14.52028 -14.28891 -14.15361 -13.97521 -13.51482 -13.19621 -13.03338 -12.88128 -12.56613 -12.44712 -12.33268 -12.11915 -12.02611 -11.84180 -11.54226 -11.30764 -11.18647 -11.10152 -11.05283 -10.85881 -10.59968 -10.47965 -10.38802 -10.13908 -9.59492 -9.02895 -8.81842 -8.42355 -8.30628 -7.66887 -6.03118 -4.07641 0.16536 1.20343 1.58392 1.96925 2.71568 2.99222 3.13986 3.31844 3.34506 3.39725 3.45421 4.00627 4.19121 4.46748 4.69549 4.74766 4.80600 4.82475 4.91445 5.01573 5.06014 5.11133 5.17502 5.22223 5.27103 5.31705 5.48948 5.50389 5.61334 5.72741 5.78900 5.85341 5.92608 6.09334 6.29300 6.57519 6.92484 7.03760 7.43409 7.51937 7.91132 7.95069 8.23840 8.35391 8.89704 9.05196 9.57416 11.05048 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.002738 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.097789 B =10225.848933 C =10725.806930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.273 6.273 3 C 0.204 3.796 4 C -0.231 4.231 5 C -0.169 4.169 6 C -0.089 4.089 7 S 0.297 5.703 8 C -0.325 4.325 9 C 0.542 3.458 10 O -0.497 6.497 11 O -0.324 6.324 12 C 0.072 3.928 13 H 0.104 0.896 14 C -0.176 4.176 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.076 3.924 19 C 0.246 3.754 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.993 4.797 -11.592 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.185 6.185 3 C 0.143 3.857 4 C -0.264 4.264 5 C -0.290 4.290 6 C -0.147 4.147 7 S 0.565 5.435 8 C -0.443 4.443 9 C 0.388 3.612 10 O -0.387 6.387 11 O -0.240 6.240 12 C 0.013 3.987 13 H 0.122 0.878 14 C -0.233 4.233 15 C 0.294 3.706 16 O -0.396 6.396 17 N -0.330 5.330 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.350 5.723 -11.297 25.688 hybrid contribution -1.675 -1.210 1.092 2.337 sum -24.025 4.513 -10.205 26.490 Atomic orbital electron populations 1.23202 0.78084 1.04508 1.01428 1.86314 1.21168 1.24211 1.86767 1.18170 0.89655 0.85564 0.92302 1.19817 1.01917 0.90367 1.14271 1.24315 1.00724 1.00697 1.03216 1.20477 1.01899 0.88740 1.03630 1.83717 0.99745 0.93951 1.66101 1.21598 0.93446 0.98468 1.30815 1.18111 0.81642 0.87658 0.73777 1.90901 1.80255 1.20909 1.46659 1.86260 1.15855 1.37851 1.84076 1.22168 0.89180 0.88879 0.98498 0.87803 1.22430 1.03375 1.03437 0.94090 1.19807 0.84111 0.85912 0.80759 1.90691 1.80249 1.20615 1.48027 1.48048 1.17496 1.11179 1.56272 1.21878 1.01428 0.85211 0.98249 1.19348 0.78712 0.97707 0.91466 1.21483 1.00577 1.41735 0.92781 0.92356 1.24932 0.95141 0.94992 0.99022 1.69943 1.04637 1.43319 1.35471 0.86435 0.78004 0.78041 0.84925 1.19776 1.20948 1.20832 0.87763 0.92412 0.92453 0.83226 0.90636 0.89869 0.89821 0.89027 0.91389 0.91125 0.93051 0.90391 0.92223 0.94617 0.93633 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.94 101.05 1.00 1.17 16 2 O -0.27 -3.52 9.36 -36.54 -0.34 -3.86 16 3 C 0.20 2.61 6.70 -39.98 -0.27 2.34 16 4 C -0.23 -2.15 9.02 -41.29 -0.37 -2.52 16 5 C -0.17 -1.49 6.27 -35.92 -0.23 -1.72 16 6 C -0.09 -0.47 10.32 36.01 0.37 -0.10 16 7 S 0.30 3.50 22.74 -107.50 -2.44 1.06 16 8 C -0.33 -4.86 6.28 -38.66 -0.24 -5.11 16 9 C 0.54 9.67 7.68 31.96 0.25 9.92 16 10 O -0.50 -9.57 15.08 -25.55 -0.39 -9.95 16 11 O -0.32 -6.15 9.05 -48.00 -0.43 -6.58 16 12 C 0.07 1.32 2.13 -27.88 -0.06 1.26 16 13 H 0.10 1.87 6.38 -51.93 -0.33 1.54 16 14 C -0.18 -2.53 9.17 37.16 0.34 -2.19 16 15 C 0.51 11.49 7.15 -10.98 -0.08 11.41 16 16 O -0.52 -13.98 16.08 -14.35 -0.23 -14.21 16 17 N -0.60 -13.13 2.86 -182.95 -0.52 -13.65 16 18 C 0.08 1.24 8.80 59.85 0.53 1.77 16 19 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 20 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 21 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 24 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 30 H 0.06 0.31 7.89 -51.93 -0.41 -0.10 16 31 H 0.15 0.95 6.99 -52.49 -0.37 0.58 16 32 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 1.15 4.53 -51.93 -0.24 0.92 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.70 6.95 -51.93 -0.36 0.34 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.06 0.84 6.01 -51.93 -0.31 0.53 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -37.47 377.90 -7.88 -45.35 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.73 Total: -3.84 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 0.80 Total: 8.86 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.21 Total: -39.74 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.39 Total: -34.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.44 Total: 1.06 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.47 -7.88 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733839044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.832 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds