Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35757 * 117.00075 * 2 1 4 4 C 1.37985 * 123.47943 * 0.20431 * 3 2 1 5 5 C 1.33643 * 115.09263 * 180.26787 * 4 3 2 6 6 C 1.50703 * 124.41700 * 179.76675 * 5 4 3 7 7 S 1.70572 * 111.16360 * 359.74776 * 5 4 3 8 8 C 1.37394 * 123.48103 * 180.02562 * 3 2 1 9 9 C 1.41480 * 125.47850 * 0.02562 * 8 3 2 10 10 O 1.21698 * 119.99828 * 359.72112 * 9 8 3 11 11 O 1.34973 * 119.99913 * 179.71516 * 9 8 3 12 12 C 1.42890 * 117.00011 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46943 * 30.00754 * 12 11 9 14 14 C 1.52998 * 109.47635 * 270.00250 * 12 11 9 15 15 C 1.50704 * 109.46969 * 150.00129 * 12 11 9 16 16 O 1.21274 * 119.99921 * 16.03396 * 15 12 11 17 17 N 1.34777 * 120.00026 * 196.03190 * 15 12 11 18 18 C 1.46505 * 120.00097 * 5.36531 * 17 15 12 19 19 C 1.46497 * 120.00271 * 185.37023 * 17 15 12 20 20 C 1.50697 * 109.47565 * 89.99671 * 19 17 15 21 21 H 1.08002 * 120.00096 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00044 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99904 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47009 * 89.99940 * 24 22 20 26 26 H 1.48503 * 109.47146 * 209.99713 * 24 22 20 27 27 H 1.48497 * 109.46943 * 329.99701 * 24 22 20 28 28 H 1.08996 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46619 * 299.99959 * 1 2 3 30 30 H 1.08999 * 109.46914 * 59.99629 * 1 2 3 31 31 H 1.07994 * 122.45185 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46831 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47231 * 300.00225 * 6 5 4 34 34 H 1.09002 * 109.47224 * 60.00179 * 6 5 4 35 35 H 1.08994 * 109.47116 * 306.14100 * 14 12 11 36 36 H 1.08994 * 109.47696 * 186.13160 * 14 12 11 37 37 H 1.09006 * 109.46975 * 66.13813 * 14 12 11 38 38 H 1.09000 * 109.47126 * 84.82209 * 18 17 15 39 39 H 1.08997 * 109.47350 * 204.82615 * 18 17 15 40 40 H 1.09000 * 109.46993 * 324.82289 * 18 17 15 41 41 H 1.08993 * 109.47299 * 209.99968 * 19 17 15 42 42 H 1.09006 * 109.46411 * 329.99554 * 19 17 15 43 43 H 0.96999 * 119.99462 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.3655 2.4103 0.0041 5 6 2.1394 3.4999 -0.0022 6 6 1.6191 4.9142 -0.0045 7 16 3.7928 3.0808 -0.0069 8 6 3.4105 1.3647 -0.0005 9 6 4.3565 0.3126 -0.0016 10 8 3.9795 -0.8445 0.0029 11 8 5.6769 0.5923 -0.0078 12 6 6.5753 -0.5188 -0.0080 13 1 6.1097 -1.3625 -0.5175 14 6 6.9019 -0.9110 1.4343 15 6 7.8451 -0.1379 -0.7248 16 8 8.0973 1.0300 -0.9322 17 7 8.7005 -1.0952 -1.1351 18 6 8.3424 -2.5085 -0.9905 19 6 9.9883 -0.7227 -1.7258 20 6 11.0268 -0.6142 -0.6391 21 1 10.7547 -0.8034 0.3888 22 6 12.3241 -0.2725 -0.9571 23 7 12.6554 -0.0416 -2.2087 24 14 13.6112 -0.1373 0.3900 25 1 14.2683 -1.4553 0.5809 26 1 14.6294 0.8718 0.0024 27 1 12.9593 0.2790 1.6576 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2870 2.4656 0.0072 32 1 2.4581 5.6099 -0.0104 33 1 1.0079 5.0751 -0.8926 34 1 1.0149 5.0806 0.8874 35 1 7.2662 -0.0375 1.9748 36 1 7.6691 -1.6852 1.4356 37 1 6.0027 -1.2899 1.9203 38 1 7.7426 -2.8206 -1.8454 39 1 9.2499 -3.1104 -0.9442 40 1 7.7682 -2.6459 -0.0742 41 1 10.2923 -1.4839 -2.4442 42 1 9.8912 0.2373 -2.2328 43 1 13.5682 0.1985 -2.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733839045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -116.176427 kcal Electronic energy + Delta-G solvation = -27369.750773 eV Core-core repulsion = 23315.118746 eV Total energy + Delta-G solvation = -4054.632027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82494 -40.01127 -38.70776 -36.73604 -36.19008 -34.81003 -32.82498 -32.37815 -31.36532 -28.48501 -27.76449 -27.44383 -25.98655 -24.46597 -23.60212 -22.88168 -21.52720 -19.57484 -18.87225 -18.73256 -17.20928 -16.99984 -16.51977 -16.42736 -16.15373 -15.68650 -15.66703 -15.05162 -14.63377 -14.48169 -14.28989 -14.22587 -14.02452 -13.49622 -13.10969 -13.04217 -12.86109 -12.54889 -12.43197 -12.26393 -12.07116 -12.01155 -11.85933 -11.64903 -11.32354 -11.20431 -11.19257 -11.06852 -10.89389 -10.59811 -10.48658 -10.39777 -10.14865 -9.62396 -9.04730 -8.82122 -8.42835 -8.32514 -7.65962 -6.03602 -4.08696 0.14703 1.18733 1.56868 1.94993 2.70613 2.96963 3.11996 3.30822 3.32347 3.38114 3.43578 4.01557 4.17764 4.45167 4.67919 4.73264 4.79297 4.80613 4.93582 5.01487 5.04781 5.13750 5.15713 5.23918 5.28182 5.31091 5.47619 5.50295 5.62141 5.73798 5.81966 5.91160 5.93919 6.16497 6.32872 6.56304 6.90492 7.04622 7.44639 7.52255 7.89635 7.94058 8.23026 8.35849 8.88482 9.04440 9.56312 11.04509 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002605 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.845192 B =10744.812590 C =11635.055391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.273 6.273 3 C 0.204 3.796 4 C -0.231 4.231 5 C -0.169 4.169 6 C -0.089 4.089 7 S 0.298 5.702 8 C -0.326 4.326 9 C 0.541 3.459 10 O -0.497 6.497 11 O -0.325 6.325 12 C 0.072 3.928 13 H 0.101 0.899 14 C -0.165 4.165 15 C 0.511 3.489 16 O -0.521 6.521 17 N -0.597 5.597 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.843 3.982 5.429 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.185 6.185 3 C 0.143 3.857 4 C -0.264 4.264 5 C -0.289 4.289 6 C -0.148 4.148 7 S 0.565 5.435 8 C -0.444 4.444 9 C 0.387 3.613 10 O -0.387 6.387 11 O -0.241 6.241 12 C 0.013 3.987 13 H 0.119 0.881 14 C -0.223 4.223 15 C 0.296 3.704 16 O -0.397 6.397 17 N -0.331 5.331 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.168 0.832 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.161 4.923 5.175 26.155 hybrid contribution -0.861 -0.953 0.704 1.464 sum -26.022 3.971 5.878 26.972 Atomic orbital electron populations 1.23203 0.78076 1.04509 1.01436 1.86310 1.21170 1.24216 1.86767 1.18173 0.89650 0.85559 0.92292 1.19820 1.01919 0.90367 1.14293 1.24322 1.00747 1.00705 1.03159 1.20479 1.01912 0.88742 1.03635 1.83762 0.99690 0.93924 1.66080 1.21609 0.93447 0.98489 1.30868 1.18129 0.81677 0.87655 0.73806 1.90896 1.80274 1.20907 1.46669 1.86283 1.15808 1.37930 1.84100 1.22223 0.89038 0.88724 0.98706 0.88138 1.22190 1.02931 1.03265 0.93897 1.19792 0.84085 0.86447 0.80121 1.90678 1.75544 1.18107 1.55346 1.48066 1.19532 1.04873 1.60597 1.21828 1.01628 0.83263 1.00278 1.19358 0.76767 0.97470 0.93739 1.21437 0.93700 1.47546 0.93998 0.92352 1.24940 0.98455 0.95048 0.95651 1.69938 1.19252 1.47112 1.17000 0.86486 0.81071 0.77773 0.82037 1.20634 1.21075 1.19845 0.87756 0.92447 0.92416 0.83225 0.90623 0.89830 0.89848 0.90759 0.89636 0.91292 0.93457 0.90143 0.92195 0.94671 0.93572 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.94 101.05 1.00 1.16 16 2 O -0.27 -3.41 9.36 -36.53 -0.34 -3.76 16 3 C 0.20 2.54 6.70 -39.98 -0.27 2.27 16 4 C -0.23 -2.08 9.02 -41.28 -0.37 -2.46 16 5 C -0.17 -1.45 6.27 -35.92 -0.23 -1.68 16 6 C -0.09 -0.46 10.32 36.01 0.37 -0.08 16 7 S 0.30 3.45 22.74 -107.50 -2.44 1.00 16 8 C -0.33 -4.76 6.28 -38.66 -0.24 -5.00 16 9 C 0.54 9.45 7.68 31.97 0.25 9.69 16 10 O -0.50 -9.32 15.08 -25.54 -0.39 -9.71 16 11 O -0.33 -6.12 9.10 -47.86 -0.44 -6.56 16 12 C 0.07 1.33 2.09 -27.88 -0.06 1.27 16 13 H 0.10 1.73 6.27 -51.93 -0.33 1.41 16 14 C -0.17 -2.61 9.17 37.16 0.34 -2.27 16 15 C 0.51 11.54 6.95 -10.98 -0.08 11.47 16 16 O -0.52 -13.94 16.13 -13.82 -0.22 -14.16 16 17 N -0.60 -13.25 2.86 -182.96 -0.52 -13.77 16 18 C 0.07 1.24 9.79 59.85 0.59 1.82 16 19 C 0.25 6.55 5.18 -5.20 -0.03 6.52 16 20 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 24 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.29 7.87 -51.93 -0.41 -0.11 16 30 H 0.06 0.31 7.89 -51.93 -0.41 -0.10 16 31 H 0.15 0.91 6.99 -52.49 -0.37 0.54 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.27 6.33 -51.93 -0.33 0.94 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 40 H 0.06 0.86 4.92 -51.93 -0.26 0.60 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.39 7.36 -51.93 -0.38 1.00 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -36.92 380.45 -7.86 -44.78 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.82 Total: -3.47 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 0.86 Total: 9.01 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.21 Total: -39.77 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.39 Total: -34.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.44 Total: 1.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.92 -7.86 -44.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733839045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.401 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds