Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35757 * 117.00075 * 2 1 4 4 C 1.37985 * 123.47943 * 0.20431 * 3 2 1 5 5 C 1.33643 * 115.09263 * 180.26787 * 4 3 2 6 6 C 1.50703 * 124.41700 * 179.76675 * 5 4 3 7 7 S 1.70572 * 111.16360 * 359.74776 * 5 4 3 8 8 C 1.37394 * 123.48103 * 180.02562 * 3 2 1 9 9 C 1.41480 * 125.47850 * 0.02562 * 8 3 2 10 10 O 1.21698 * 119.99828 * 359.72112 * 9 8 3 11 11 O 1.34973 * 119.99913 * 179.71516 * 9 8 3 12 12 C 1.42890 * 117.00011 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46943 * 30.00754 * 12 11 9 14 14 C 1.52998 * 109.47635 * 270.00250 * 12 11 9 15 15 C 1.50704 * 109.46969 * 150.00129 * 12 11 9 16 16 O 1.21274 * 119.99921 * 16.03396 * 15 12 11 17 17 N 1.34777 * 120.00026 * 196.03190 * 15 12 11 18 18 C 1.46505 * 120.00097 * 5.36531 * 17 15 12 19 19 C 1.46497 * 120.00271 * 185.37023 * 17 15 12 20 20 C 1.50697 * 109.47565 * 89.99671 * 19 17 15 21 21 H 1.08002 * 120.00096 * 359.97438 * 20 19 17 22 22 C 1.37875 * 120.00044 * 180.02562 * 20 19 17 23 23 N 1.31519 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99904 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47009 * 89.99940 * 24 22 20 26 26 H 1.48503 * 109.47146 * 209.99713 * 24 22 20 27 27 H 1.48497 * 109.46943 * 329.99701 * 24 22 20 28 28 H 1.08996 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46619 * 299.99959 * 1 2 3 30 30 H 1.08999 * 109.46914 * 59.99629 * 1 2 3 31 31 H 1.07994 * 122.45185 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46831 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.47231 * 300.00225 * 6 5 4 34 34 H 1.09002 * 109.47224 * 60.00179 * 6 5 4 35 35 H 1.08994 * 109.47116 * 306.14100 * 14 12 11 36 36 H 1.08994 * 109.47696 * 186.13160 * 14 12 11 37 37 H 1.09006 * 109.46975 * 66.13813 * 14 12 11 38 38 H 1.09000 * 109.47126 * 84.82209 * 18 17 15 39 39 H 1.08997 * 109.47350 * 204.82615 * 18 17 15 40 40 H 1.09000 * 109.46993 * 324.82289 * 18 17 15 41 41 H 1.08993 * 109.47299 * 209.99968 * 19 17 15 42 42 H 1.09006 * 109.46411 * 329.99554 * 19 17 15 43 43 H 0.96999 * 119.99462 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.3655 2.4103 0.0041 5 6 2.1394 3.4999 -0.0022 6 6 1.6191 4.9142 -0.0045 7 16 3.7928 3.0808 -0.0069 8 6 3.4105 1.3647 -0.0005 9 6 4.3565 0.3126 -0.0016 10 8 3.9795 -0.8445 0.0029 11 8 5.6769 0.5923 -0.0078 12 6 6.5753 -0.5188 -0.0080 13 1 6.1097 -1.3625 -0.5175 14 6 6.9019 -0.9110 1.4343 15 6 7.8451 -0.1379 -0.7248 16 8 8.0973 1.0300 -0.9322 17 7 8.7005 -1.0952 -1.1351 18 6 8.3424 -2.5085 -0.9905 19 6 9.9883 -0.7227 -1.7258 20 6 11.0268 -0.6142 -0.6391 21 1 10.7547 -0.8034 0.3888 22 6 12.3241 -0.2725 -0.9571 23 7 12.6554 -0.0416 -2.2087 24 14 13.6112 -0.1373 0.3900 25 1 14.2683 -1.4553 0.5809 26 1 14.6294 0.8718 0.0024 27 1 12.9593 0.2790 1.6576 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2870 2.4656 0.0072 32 1 2.4581 5.6099 -0.0104 33 1 1.0079 5.0751 -0.8926 34 1 1.0149 5.0806 0.8874 35 1 7.2662 -0.0375 1.9748 36 1 7.6691 -1.6852 1.4356 37 1 6.0027 -1.2899 1.9203 38 1 7.7426 -2.8206 -1.8454 39 1 9.2499 -3.1104 -0.9442 40 1 7.7682 -2.6459 -0.0742 41 1 10.2923 -1.4839 -2.4442 42 1 9.8912 0.2373 -2.2328 43 1 13.5682 0.1985 -2.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733839045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -139.422255 kcal Electronic energy + Delta-G solvation = -27370.758787 eV Core-core repulsion = 23315.118746 eV Total energy + Delta-G solvation = -4055.640041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.09390 -41.09710 -40.30518 -37.70838 -37.38218 -36.69035 -34.86161 -33.44622 -32.63549 -29.74536 -29.13905 -28.21127 -27.58305 -26.06401 -24.76069 -24.12893 -22.89282 -20.61978 -20.33894 -19.88877 -18.69628 -18.44342 -18.10985 -17.62706 -17.36004 -17.22451 -16.75987 -16.59312 -16.19528 -16.00519 -15.27865 -14.95394 -14.84915 -14.69691 -14.61308 -14.29743 -14.06166 -13.70446 -13.59659 -13.57671 -13.36461 -13.19267 -13.14513 -13.07696 -12.84088 -12.68305 -12.51274 -12.49749 -12.21296 -11.91726 -11.86349 -11.84876 -11.73006 -11.67046 -10.64402 -10.63556 -9.88977 -9.53775 -9.19543 -8.23121 -6.38117 -0.74240 0.32403 0.77191 1.07198 1.34149 1.37700 1.40943 1.50492 1.58719 1.83575 2.34463 2.37090 2.46534 3.06927 3.39059 3.49899 3.70055 3.81819 3.93111 4.03075 4.18363 4.27546 4.32717 4.38269 4.48984 4.55445 4.59754 4.62838 4.72477 4.74600 4.83107 4.86998 4.92588 5.00111 5.04703 5.18879 5.20194 5.28036 5.51303 5.77833 6.02862 6.15009 6.51176 6.65587 6.70413 7.17822 7.35067 8.84697 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.002605 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.845192 B =10744.812590 C =11635.055391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.235 4.235 5 C -0.133 4.133 6 C -0.092 4.092 7 S 0.259 5.741 8 C -0.380 4.380 9 C 0.540 3.460 10 O -0.523 6.523 11 O -0.342 6.342 12 C 0.081 3.919 13 H 0.115 0.885 14 C -0.158 4.158 15 C 0.503 3.497 16 O -0.576 6.576 17 N -0.600 5.600 18 C 0.067 3.933 19 C 0.258 3.742 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.271 1.271 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.189 0.811 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.031 0.969 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.338 4.047 6.992 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.215 6.215 3 C 0.156 3.844 4 C -0.266 4.266 5 C -0.254 4.254 6 C -0.151 4.151 7 S 0.526 5.474 8 C -0.498 4.498 9 C 0.389 3.611 10 O -0.415 6.415 11 O -0.259 6.259 12 C 0.022 3.978 13 H 0.132 0.868 14 C -0.215 4.215 15 C 0.290 3.710 16 O -0.455 6.455 17 N -0.332 5.332 18 C -0.074 4.074 19 C 0.138 3.862 20 C -0.583 4.583 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.206 0.794 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.698 4.930 6.744 28.930 hybrid contribution -0.292 -0.927 0.153 0.984 sum -27.990 4.003 6.898 29.104 Atomic orbital electron populations 1.23583 0.75184 1.06105 1.03359 1.86271 1.24279 1.24818 1.86136 1.18537 0.89179 0.86744 0.89977 1.20107 1.03612 0.88797 1.14042 1.24784 0.98485 1.02557 0.99558 1.20720 1.02611 0.86073 1.05648 1.83847 1.02887 0.92908 1.67780 1.21650 0.93989 0.98973 1.35141 1.18547 0.81153 0.88319 0.73110 1.90849 1.80257 1.21821 1.48617 1.86293 1.16837 1.38247 1.84540 1.22110 0.87018 0.88909 0.99744 0.86771 1.22177 1.04187 1.03217 0.91929 1.20576 0.85254 0.85687 0.79462 1.90638 1.77054 1.20384 1.57450 1.48062 1.18048 1.07308 1.59816 1.22142 1.02570 0.79874 1.02857 1.18884 0.78857 0.95074 0.93412 1.21688 0.94502 1.47910 0.94177 0.92408 1.25884 1.00760 0.94345 0.98144 1.70061 1.20014 1.47635 1.19100 0.85374 0.78029 0.78511 0.78652 1.18722 1.20664 1.19604 0.86554 0.90326 0.90540 0.79428 0.90182 0.87686 0.87464 0.91702 0.88417 0.89253 0.91110 0.89851 0.89265 0.95144 0.98162 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.94 113.37 1.13 1.25 16 2 O -0.30 -7.23 9.36 -74.06 -0.69 -7.92 16 3 C 0.22 5.20 6.70 22.01 0.15 5.35 16 4 C -0.23 -3.55 9.02 21.17 0.19 -3.36 16 5 C -0.13 -1.97 6.27 24.64 0.15 -1.82 16 6 C -0.09 -0.59 10.32 71.24 0.74 0.14 16 7 S 0.26 6.09 22.74 -56.49 -1.28 4.81 16 8 C -0.38 -11.34 6.28 22.87 0.14 -11.20 16 9 C 0.54 19.49 7.68 68.62 0.53 20.02 16 10 O -0.52 -19.98 15.08 25.04 0.38 -19.61 16 11 O -0.34 -13.47 9.10 -52.58 -0.48 -13.95 16 12 C 0.08 3.04 2.09 29.85 0.06 3.10 16 13 H 0.11 3.92 6.27 -2.39 -0.01 3.91 16 14 C -0.16 -4.90 9.17 71.98 0.66 -4.24 16 15 C 0.50 23.64 6.95 87.66 0.61 24.25 16 16 O -0.58 -32.72 16.13 15.52 0.25 -32.47 16 17 N -0.60 -27.32 2.86 -851.14 -2.43 -29.75 16 18 C 0.07 2.20 9.79 127.77 1.25 3.45 16 19 C 0.26 14.41 5.18 85.63 0.44 14.86 16 20 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 21 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 22 C 0.01 0.45 5.46 84.65 0.46 0.91 16 23 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 24 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.53 7.87 -2.38 -0.02 0.51 16 30 H 0.08 0.55 7.89 -2.39 -0.02 0.53 16 31 H 0.19 1.35 6.99 -2.91 -0.02 1.33 16 32 H 0.08 0.51 8.11 -2.39 -0.02 0.49 16 33 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.10 2.75 6.33 -2.39 -0.02 2.74 16 37 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 40 H 0.09 2.39 4.92 -2.39 -0.01 2.37 16 41 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 42 H 0.00 0.02 7.36 -2.38 -0.02 0.00 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -85.32 380.45 5.84 -79.48 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.04 Total: 7.50 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.75 Total: 21.20 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.15 Total: -86.26 kcal Atomic # 8 Polarization: -73.40 SS G_CDS: -0.54 Total: -73.94 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.28 Total: 4.81 kcal Total: -85.32 5.84 -79.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733839045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.945 kcal (2) G-P(sol) polarization free energy of solvation -85.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds