Wall clock time and date at job start Sat Apr 11 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 C 1.53001 * 109.46798 * 240.00474 * 2 1 3 5 5 C 1.50707 * 109.47165 * 295.00073 * 4 2 1 6 6 C 1.38229 * 119.99704 * 269.72604 * 5 4 2 7 7 C 1.38236 * 119.99772 * 179.76137 * 6 5 4 8 8 C 1.38236 * 119.99682 * 0.49038 * 7 6 5 9 9 S 1.76205 * 119.99687 * 179.76375 * 8 7 6 10 10 O 1.42099 * 106.40324 * 23.56369 * 9 8 7 11 11 O 1.42101 * 106.40170 * 156.48367 * 9 8 7 12 12 N 1.65599 * 107.21917 * 270.01990 * 9 8 7 13 13 C 1.36933 * 119.99665 * 90.00232 * 12 9 8 14 14 H 1.07997 * 120.00521 * 326.59379 * 13 12 9 15 15 C 1.38816 * 119.99943 * 146.59399 * 13 12 9 16 16 N 1.31614 * 120.00247 * 336.20550 * 15 13 12 17 17 Si 1.86808 * 120.00064 * 156.20027 * 15 13 12 18 18 H 1.48502 * 109.46739 * 90.00390 * 17 15 13 19 19 H 1.48499 * 109.47207 * 210.00327 * 17 15 13 20 20 H 1.48501 * 109.47109 * 330.00346 * 17 15 13 21 21 C 1.46498 * 120.00088 * 269.99928 * 12 9 8 22 22 C 1.50707 * 109.46849 * 96.18519 * 21 12 9 23 23 O 1.20824 * 119.99763 * 359.97438 * 22 21 12 24 24 O 1.34226 * 120.00125 * 180.02562 * 22 21 12 25 25 C 1.38234 * 120.00246 * 359.79005 * 8 7 6 26 26 C 1.38231 * 119.99961 * 359.94738 * 25 8 7 27 27 H 1.09004 * 109.47341 * 59.99403 * 1 2 3 28 28 H 1.08993 * 109.47404 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46946 * 299.99628 * 1 2 3 30 30 H 1.08995 * 109.47341 * 120.00366 * 2 1 3 31 31 H 1.09003 * 109.46783 * 60.00272 * 3 2 1 32 32 H 1.08993 * 109.47160 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47376 * 300.00575 * 3 2 1 34 34 H 1.08999 * 109.47399 * 54.99977 * 4 2 1 35 35 H 1.08994 * 109.47490 * 175.00282 * 4 2 1 36 36 H 1.07999 * 120.00135 * 0.02562 * 6 5 4 37 37 H 1.07997 * 120.00237 * 180.25278 * 7 6 5 38 38 H 0.97001 * 120.00464 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47404 * 216.17748 * 21 12 9 40 40 H 1.08998 * 109.47284 * 336.18515 * 21 12 9 41 41 H 0.96695 * 117.00380 * 180.02562 * 24 22 21 42 42 H 1.07998 * 119.99819 * 179.97438 * 25 8 7 43 43 H 1.07998 * 119.99930 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 -2.1733 -1.1891 6 6 2.4838 -3.0975 -0.6004 7 6 2.1159 -4.4286 -0.5407 8 6 0.9099 -4.8371 -1.0788 9 16 0.4437 -6.5349 -1.0083 10 8 1.1620 -7.1035 0.0780 11 8 -0.9738 -6.5661 -1.1041 12 7 1.0211 -7.2592 -2.3810 13 6 2.2731 -7.8137 -2.3877 14 1 3.0630 -7.3709 -1.7991 15 6 2.5272 -8.9449 -3.1511 16 7 1.5406 -9.7508 -3.4819 17 14 4.2694 -9.3234 -3.7090 18 1 4.9443 -10.1645 -2.6880 19 1 4.2277 -10.0523 -5.0020 20 1 5.0210 -8.0541 -3.8802 21 6 0.1923 -7.3069 -3.5881 22 6 0.5638 -6.1641 -4.4978 23 8 1.4313 -5.3893 -4.1710 24 8 -0.0699 -6.0066 -5.6705 25 6 0.0698 -3.9138 -1.6727 26 6 0.4353 -2.5818 -1.7275 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6053 -0.2616 -2.1370 35 1 3.1262 -0.6444 -1.2953 36 1 3.4277 -2.7789 -0.1833 37 1 2.7724 -5.1501 -0.0772 38 1 1.7180 -10.5411 -4.0156 39 1 0.3581 -8.2517 -4.1056 40 1 -0.8585 -7.2238 -3.3109 41 1 0.2031 -5.2594 -6.2202 42 1 -0.8722 -4.2330 -2.0934 43 1 -0.2208 -1.8605 -2.1919 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736454250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:01 Heat of formation + Delta-G solvation = -162.659933 kcal Electronic energy + Delta-G solvation = -28775.063338 eV Core-core repulsion = 24718.415635 eV Total energy + Delta-G solvation = -4056.647703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.97657 -40.51613 -38.13712 -37.58958 -37.15844 -36.73018 -36.55553 -33.38904 -32.61587 -32.02578 -29.43211 -28.03799 -27.62897 -26.11470 -23.83182 -23.11113 -22.58852 -20.88390 -20.48680 -19.50927 -18.97467 -18.45070 -18.40351 -17.14157 -16.99818 -16.59574 -16.45470 -16.41118 -16.01464 -15.60821 -15.28802 -15.17538 -15.11220 -14.48091 -14.20738 -14.05652 -13.83863 -13.53094 -13.36501 -13.15877 -13.05816 -13.04446 -12.98999 -12.83559 -12.66924 -12.62143 -12.54762 -12.25311 -12.14628 -12.08315 -12.03426 -11.77957 -11.61500 -11.52731 -11.39328 -11.02753 -10.01964 -9.95621 -9.75950 -8.28189 -6.01957 -0.42119 -0.06614 0.37097 1.41542 1.46030 1.47119 1.58970 2.02044 2.39034 2.48040 2.71752 2.87618 3.16625 3.46994 3.69803 3.78882 3.94915 4.03578 4.08633 4.27611 4.30726 4.38400 4.43528 4.53067 4.68246 4.73465 4.79249 4.83541 4.91975 4.98306 5.01117 5.05371 5.09372 5.17845 5.21039 5.27527 5.31833 5.39683 5.47857 5.56954 5.67307 5.76258 5.94224 6.36676 6.93115 7.22348 7.33282 8.76191 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003856 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.720515 B = 7259.534504 C = 7314.994675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.078 4.078 5 C -0.026 4.026 6 C -0.142 4.142 7 C -0.033 4.033 8 C -0.665 4.665 9 S 2.657 3.343 10 O -0.996 6.996 11 O -1.008 7.008 12 N -0.835 5.835 13 C -0.310 4.310 14 H 0.086 0.914 15 C 0.001 3.999 16 N -0.888 5.888 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.271 1.271 21 C 0.112 3.888 22 C 0.458 3.542 23 O -0.522 6.522 24 O -0.515 6.515 25 C -0.031 4.031 26 C -0.135 4.135 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.275 0.725 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.419 0.581 42 H 0.130 0.870 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 18.614 -0.770 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.115 4.115 5 C -0.026 4.026 6 C -0.161 4.161 7 C -0.052 4.052 8 C -0.755 4.755 9 S 2.758 3.242 10 O -0.987 6.987 11 O -0.998 6.998 12 N -0.665 5.665 13 C -0.443 4.443 14 H 0.103 0.897 15 C -0.203 4.203 16 N -0.528 5.528 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.017 4.017 22 C 0.299 3.701 23 O -0.410 6.410 24 O -0.328 6.328 25 C -0.050 4.050 26 C -0.153 4.153 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.132 0.868 41 H 0.279 0.721 42 H 0.147 0.853 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.826 17.952 0.200 17.972 hybrid contribution 1.122 0.148 -0.857 1.420 sum 0.297 18.099 -0.657 18.114 Atomic orbital electron populations 1.21967 0.95240 1.01558 1.02436 1.21065 0.96100 0.96746 0.96883 1.21808 1.01293 0.94463 1.02410 1.20866 1.02381 0.88484 0.99730 1.20467 0.92859 0.96965 0.92347 1.21388 1.01237 0.91943 1.01489 1.20979 0.92953 0.97840 0.93442 1.30600 1.06278 1.23972 1.14624 1.02993 0.72418 0.74914 0.73877 1.93416 1.74380 1.77288 1.53569 1.93402 1.31322 1.87922 1.87184 1.52337 1.24505 1.68930 1.20736 1.19127 0.85284 1.08513 1.31338 0.89656 1.25971 1.02124 0.93508 0.98683 1.69932 1.33521 1.12056 1.37325 0.85298 0.78826 0.78333 0.78187 1.19738 1.19754 1.19552 1.21003 0.95400 0.98491 0.86843 1.24725 0.78729 0.85829 0.80840 1.90649 1.30967 1.44779 1.74625 1.84535 1.62857 1.54183 1.31202 1.20915 0.97259 0.93903 0.92960 1.21343 0.97598 0.94999 1.01391 0.91587 0.93709 0.92228 0.91773 0.92156 0.92109 0.91919 0.89327 0.89439 0.82955 0.85480 0.91554 0.83980 0.86793 0.72086 0.85257 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.76 71.98 0.63 -1.85 16 2 C -0.09 -1.38 2.91 -10.79 -0.03 -1.41 16 3 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 4 C -0.08 -1.34 4.84 29.85 0.14 -1.19 16 5 C -0.03 -0.66 4.71 -19.86 -0.09 -0.76 16 6 C -0.14 -4.12 9.70 22.27 0.22 -3.91 16 7 C -0.03 -1.21 9.52 22.27 0.21 -1.00 16 8 C -0.66 -26.91 5.79 22.27 0.13 -26.78 16 9 S 2.66 127.15 5.65 -56.49 -0.32 126.83 16 10 O -1.00 -53.06 16.50 -128.00 -2.11 -55.17 16 11 O -1.01 -48.98 15.83 -128.00 -2.03 -51.01 16 12 N -0.84 -41.60 2.39 -347.17 -0.83 -42.43 16 13 C -0.31 -16.49 8.71 84.04 0.73 -15.76 16 14 H 0.09 4.55 7.93 -2.91 -0.02 4.53 16 15 C 0.00 0.04 4.99 84.86 0.42 0.47 16 16 N -0.89 -46.63 11.26 21.65 0.24 -46.39 16 17 Si 0.97 41.44 29.62 68.60 2.03 43.47 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.11 5.03 5.89 85.64 0.50 5.53 16 22 C 0.46 18.25 8.36 71.24 0.60 18.84 16 23 O -0.52 -22.72 16.80 21.97 0.37 -22.35 16 24 O -0.51 -15.70 13.42 -51.38 -0.69 -16.39 16 25 C -0.03 -1.08 9.45 22.27 0.21 -0.87 16 26 C -0.13 -3.72 7.96 22.27 0.18 -3.54 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.04 0.88 6.26 -2.39 -0.01 0.87 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 36 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.13 4.81 7.62 -2.91 -0.02 4.79 16 38 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 39 H 0.14 6.84 5.31 -2.39 -0.01 6.83 16 40 H 0.11 4.77 6.89 -2.39 -0.02 4.75 16 41 H 0.42 8.37 9.10 -74.06 -0.67 7.69 16 42 H 0.13 4.36 7.62 -2.91 -0.02 4.34 16 43 H 0.15 3.19 8.04 -2.91 -0.02 3.17 16 Total: -1.00 -69.77 373.75 1.54 -68.23 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.36 Total: 28.44 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.51 Total: -33.22 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -0.58 Total: -88.82 kcal Atomic # 8 Polarization: -140.46 SS G_CDS: -4.46 Total: -144.92 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 127.15 SS G_CDS: -0.32 Total: 126.83 kcal Total: -69.77 1.54 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736454250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.435 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds