Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09001 * 109.47308 * 55.00345 * 3 2 1 5 5 C 1.52997 * 109.47434 * 294.99926 * 3 2 1 6 6 C 1.50701 * 109.47065 * 174.99749 * 3 2 1 7 7 C 1.38233 * 120.00360 * 240.00012 * 6 3 2 8 8 C 1.38232 * 120.00225 * 180.02562 * 7 6 3 9 9 C 1.38234 * 120.00129 * 0.02562 * 8 7 6 10 10 S 1.76199 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.42090 * 106.40501 * 336.46304 * 10 9 8 12 12 O 1.42108 * 106.40274 * 203.53899 * 10 9 8 13 13 N 1.65599 * 107.21750 * 90.00527 * 10 9 8 14 14 C 1.36943 * 119.99731 * 269.72320 * 13 10 9 15 15 H 1.07997 * 119.99819 * 327.09846 * 14 13 10 16 16 C 1.38818 * 119.99912 * 147.09858 * 14 13 10 17 17 N 1.31619 * 119.99794 * 335.84301 * 16 14 13 18 18 Si 1.86798 * 119.99734 * 155.84238 * 16 14 13 19 19 H 1.48496 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47320 * 120.00043 * 18 16 14 21 21 H 1.48508 * 109.46652 * 239.99665 * 18 16 14 22 22 C 1.46504 * 120.00346 * 89.99558 * 13 10 9 23 23 C 1.50698 * 109.46837 * 95.85072 * 22 13 10 24 24 O 1.20826 * 120.00346 * 0.02562 * 23 22 13 25 25 O 1.34234 * 119.99807 * 179.97438 * 23 22 13 26 26 C 1.38232 * 119.99964 * 0.25299 * 9 8 7 27 27 C 1.38234 * 119.99995 * 60.02149 * 6 3 2 28 28 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47648 * 299.99928 * 1 2 3 30 30 H 1.09008 * 109.47480 * 60.00247 * 1 2 3 31 31 H 1.08998 * 109.47648 * 240.00071 * 2 1 3 32 32 H 1.09002 * 109.46877 * 119.99437 * 2 1 3 33 33 H 1.08996 * 109.47206 * 59.99683 * 5 3 2 34 34 H 1.08998 * 109.47164 * 180.02562 * 5 3 2 35 35 H 1.09010 * 109.46774 * 300.00085 * 5 3 2 36 36 H 1.08004 * 119.99645 * 359.97438 * 7 6 3 37 37 H 1.08003 * 119.99836 * 179.97438 * 8 7 6 38 38 H 0.97000 * 119.99267 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46846 * 215.85122 * 22 13 10 40 40 H 1.08996 * 109.46783 * 335.85273 * 22 13 10 41 41 H 0.96695 * 116.99975 * 180.02562 * 25 23 22 42 42 H 1.07996 * 120.00451 * 179.72351 * 26 9 8 43 43 H 1.08004 * 120.00098 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1239 7 6 4.1461 2.0737 1.1961 8 6 5.5238 2.0758 1.3094 9 6 6.2972 1.4491 0.3503 10 16 8.0533 1.4525 0.4944 11 8 8.3874 2.5722 1.3029 12 8 8.5640 1.2611 -0.8178 13 7 8.4765 0.1067 1.3616 14 6 8.5732 0.1737 2.7260 15 1 8.9016 1.0870 3.1998 16 6 8.2490 -0.9321 3.5000 17 7 7.4281 -1.8470 3.0293 18 14 8.9779 -1.1217 5.2094 19 1 9.8644 0.0335 5.5004 20 1 7.8833 -1.1711 6.2116 21 1 9.7660 -2.3787 5.2748 22 6 8.7533 -1.1542 0.6688 23 6 10.2379 -1.2917 0.4500 24 8 10.9880 -0.4256 0.8338 25 8 10.7272 -2.3768 -0.1704 26 6 5.6932 0.8248 -0.7250 27 6 4.3152 0.8172 -0.8349 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.5489 2.1252 -1.3969 34 1 1.9988 3.1541 -1.3074 35 1 2.0699 1.5875 -2.1492 36 1 3.5419 2.5644 1.9448 37 1 5.9960 2.5678 2.1470 38 1 7.2014 -2.6195 3.5703 39 1 8.3965 -1.9873 1.2743 40 1 8.2421 -1.1595 -0.2939 41 1 11.6861 -2.4205 -0.2875 42 1 6.2975 0.3390 -1.4767 43 1 3.8431 0.3261 -1.6731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736890838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -147.412259 kcal Electronic energy + Delta-G solvation = -28478.253043 eV Core-core repulsion = 24422.266529 eV Total energy + Delta-G solvation = -4055.986514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.39936 -39.24700 -36.02875 -35.99314 -35.98050 -35.01576 -34.55916 -31.76904 -31.05985 -30.54887 -28.68354 -27.79315 -24.90497 -24.38245 -22.68630 -22.00099 -21.05607 -19.77692 -18.67114 -17.68765 -17.35993 -17.03918 -16.39823 -15.66400 -15.49051 -15.26833 -14.92565 -14.81556 -14.56108 -14.19502 -14.07634 -13.79675 -13.36235 -13.14759 -12.86363 -12.79066 -12.52945 -12.15357 -12.12926 -11.91919 -11.75314 -11.74611 -11.22537 -11.19490 -11.06051 -10.89639 -10.85953 -10.81408 -10.80246 -10.74931 -10.58159 -10.44661 -10.34882 -9.87048 -9.77315 -9.41009 -8.58064 -8.51435 -8.08859 -6.71222 -4.25362 1.32269 1.66931 1.81849 3.03055 3.08099 3.14375 3.24009 3.69952 3.93622 4.00847 4.39083 4.64742 4.66636 4.75144 4.97559 5.04012 5.16647 5.29861 5.33868 5.37581 5.43385 5.52199 5.60905 5.76158 5.82782 5.82842 5.87806 5.89721 5.97179 6.00362 6.07403 6.23928 6.25736 6.27751 6.44762 6.54829 6.66321 6.77928 6.86659 6.96531 7.16962 7.28967 7.37646 8.13807 8.54820 8.69164 9.00339 10.27129 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004055 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.149582 B = 6903.120989 C = 7634.211358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.055 4.055 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.046 4.046 7 C -0.144 4.144 8 C -0.014 4.014 9 C -0.656 4.656 10 S 2.565 3.435 11 O -0.974 6.974 12 O -1.000 7.000 13 N -0.797 5.797 14 C -0.244 4.244 15 H 0.114 0.886 16 C 0.034 3.966 17 N -0.833 5.833 18 Si 0.924 3.076 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.133 3.867 23 C 0.462 3.538 24 O -0.505 6.505 25 O -0.527 6.527 26 C -0.029 4.029 27 C -0.142 4.142 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.277 0.723 39 H 0.150 0.850 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.129 0.871 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -1.420 -4.344 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.073 4.073 4 H 0.095 0.905 5 C -0.202 4.202 6 C -0.046 4.046 7 C -0.162 4.162 8 C -0.033 4.033 9 C -0.736 4.736 10 S 2.666 3.334 11 O -0.964 6.964 12 O -0.990 6.990 13 N -0.621 5.621 14 C -0.389 4.389 15 H 0.132 0.868 16 C -0.178 4.178 17 N -0.472 5.472 18 Si 0.749 3.251 19 H -0.183 1.183 20 H -0.202 1.202 21 H -0.201 1.201 22 C 0.003 3.997 23 C 0.302 3.698 24 O -0.392 6.392 25 O -0.339 6.339 26 C -0.048 4.048 27 C -0.160 4.160 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.115 0.885 41 H 0.254 0.746 42 H 0.146 0.854 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.722 -0.515 -4.713 10.817 hybrid contribution 0.112 -0.485 0.780 0.925 sum -9.610 -0.999 -3.933 10.432 Atomic orbital electron populations 1.21826 0.95879 1.01536 1.01721 1.21586 0.95500 0.95648 1.02721 1.20228 0.91196 0.96897 0.98983 0.90505 1.21891 1.00988 1.00585 0.96714 1.19942 0.94804 0.95570 0.94292 1.21096 0.94985 1.01829 0.98324 1.20856 0.93359 0.93065 0.96011 1.32033 1.31157 1.08474 1.01953 1.09254 0.74551 0.76388 0.73191 1.93379 1.82856 1.51328 1.68832 1.93367 1.79021 1.86472 1.40132 1.53108 1.70339 1.23946 1.14662 1.19825 1.37486 1.01944 0.79677 0.86835 1.25741 0.94494 0.97213 1.00344 1.69895 1.27266 1.11454 1.38556 0.85883 0.79353 0.79268 0.80637 1.18336 1.20223 1.20132 1.20775 0.86507 0.93106 0.99281 1.24757 0.93978 0.78078 0.73022 1.90644 1.60366 1.41218 1.46927 1.84572 1.30172 1.45676 1.73438 1.20809 0.94724 0.94151 0.95155 1.20949 0.93778 1.01761 0.99530 0.92797 0.92825 0.92589 0.91688 0.91533 0.92259 0.92622 0.92391 0.86218 0.84850 0.91246 0.83344 0.88465 0.74618 0.85351 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.67 37.15 0.36 -0.97 16 2 C -0.12 -1.26 5.14 -26.73 -0.14 -1.40 16 3 C -0.05 -0.63 2.56 -91.77 -0.24 -0.87 16 4 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 5 C -0.14 -1.46 8.76 37.16 0.33 -1.14 16 6 C -0.05 -0.69 4.78 -104.62 -0.50 -1.19 16 7 C -0.14 -2.39 9.67 -39.59 -0.38 -2.77 16 8 C -0.01 -0.27 9.52 -39.58 -0.38 -0.65 16 9 C -0.66 -13.76 5.97 -39.59 -0.24 -14.00 16 10 S 2.57 61.26 5.61 -107.50 -0.60 60.66 16 11 O -0.97 -25.52 16.16 -57.17 -0.92 -26.44 16 12 O -1.00 -24.84 16.23 -57.17 -0.93 -25.77 16 13 N -0.80 -19.09 2.39 -61.08 -0.15 -19.24 16 14 C -0.24 -6.05 8.97 -15.05 -0.14 -6.18 16 15 H 0.11 2.89 7.40 -52.49 -0.39 2.50 16 16 C 0.03 0.79 4.98 -17.43 -0.09 0.70 16 17 N -0.83 -19.30 11.27 55.49 0.63 -18.68 16 18 Si 0.92 18.65 29.62 -169.99 -5.03 13.62 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 C 0.13 2.88 5.56 -5.19 -0.03 2.85 16 23 C 0.46 9.85 8.36 36.00 0.30 10.16 16 24 O -0.51 -12.34 17.06 -18.75 -0.32 -12.66 16 25 O -0.53 -8.81 13.42 -39.27 -0.53 -9.33 16 26 C -0.03 -0.55 9.52 -39.58 -0.38 -0.92 16 27 C -0.14 -2.25 8.76 -39.58 -0.35 -2.60 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 6.57 -51.92 -0.34 0.10 16 31 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.58 7.39 -51.92 -0.38 0.20 16 36 H 0.12 1.66 7.95 -52.48 -0.42 1.24 16 37 H 0.13 2.60 7.62 -52.48 -0.40 2.20 16 38 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 39 H 0.15 3.25 5.31 -51.93 -0.28 2.97 16 40 H 0.10 1.88 7.58 -51.93 -0.39 1.49 16 41 H 0.40 4.70 9.10 45.56 0.41 5.12 16 42 H 0.13 2.24 7.61 -52.49 -0.40 1.84 16 43 H 0.12 1.56 7.16 -52.48 -0.38 1.19 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -31.34 371.89 -9.04 -40.38 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.93 Total: 10.85 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.86 Total: -18.99 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.48 Total: -37.92 kcal Atomic # 8 Polarization: -71.50 SS G_CDS: -2.70 Total: -74.20 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 61.26 SS G_CDS: -0.60 Total: 60.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.34 -9.04 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736890838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.032 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds