Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 H 1.09001 * 109.47308 * 55.00345 * 3 2 1 5 5 C 1.52997 * 109.47434 * 294.99926 * 3 2 1 6 6 C 1.50701 * 109.47065 * 174.99749 * 3 2 1 7 7 C 1.38233 * 120.00360 * 240.00012 * 6 3 2 8 8 C 1.38232 * 120.00225 * 180.02562 * 7 6 3 9 9 C 1.38234 * 120.00129 * 0.02562 * 8 7 6 10 10 S 1.76199 * 119.99925 * 179.97438 * 9 8 7 11 11 O 1.42090 * 106.40501 * 336.46304 * 10 9 8 12 12 O 1.42108 * 106.40274 * 203.53899 * 10 9 8 13 13 N 1.65599 * 107.21750 * 90.00527 * 10 9 8 14 14 C 1.36943 * 119.99731 * 269.72320 * 13 10 9 15 15 H 1.07997 * 119.99819 * 327.09846 * 14 13 10 16 16 C 1.38818 * 119.99912 * 147.09858 * 14 13 10 17 17 N 1.31619 * 119.99794 * 335.84301 * 16 14 13 18 18 Si 1.86798 * 119.99734 * 155.84238 * 16 14 13 19 19 H 1.48496 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47320 * 120.00043 * 18 16 14 21 21 H 1.48508 * 109.46652 * 239.99665 * 18 16 14 22 22 C 1.46504 * 120.00346 * 89.99558 * 13 10 9 23 23 C 1.50698 * 109.46837 * 95.85072 * 22 13 10 24 24 O 1.20826 * 120.00346 * 0.02562 * 23 22 13 25 25 O 1.34234 * 119.99807 * 179.97438 * 23 22 13 26 26 C 1.38232 * 119.99964 * 0.25299 * 9 8 7 27 27 C 1.38234 * 119.99995 * 60.02149 * 6 3 2 28 28 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47648 * 299.99928 * 1 2 3 30 30 H 1.09008 * 109.47480 * 60.00247 * 1 2 3 31 31 H 1.08998 * 109.47648 * 240.00071 * 2 1 3 32 32 H 1.09002 * 109.46877 * 119.99437 * 2 1 3 33 33 H 1.08996 * 109.47206 * 59.99683 * 5 3 2 34 34 H 1.08998 * 109.47164 * 180.02562 * 5 3 2 35 35 H 1.09010 * 109.46774 * 300.00085 * 5 3 2 36 36 H 1.08004 * 119.99645 * 359.97438 * 7 6 3 37 37 H 1.08003 * 119.99836 * 179.97438 * 8 7 6 38 38 H 0.97000 * 119.99267 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46846 * 215.85122 * 22 13 10 40 40 H 1.08996 * 109.46783 * 335.85273 * 22 13 10 41 41 H 0.96695 * 116.99975 * 180.02562 * 25 23 22 42 42 H 1.07996 * 120.00451 * 179.72351 * 26 9 8 43 43 H 1.08004 * 120.00098 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1239 7 6 4.1461 2.0737 1.1961 8 6 5.5238 2.0758 1.3094 9 6 6.2972 1.4491 0.3503 10 16 8.0533 1.4525 0.4944 11 8 8.3874 2.5722 1.3029 12 8 8.5640 1.2611 -0.8178 13 7 8.4765 0.1067 1.3616 14 6 8.5732 0.1737 2.7260 15 1 8.9016 1.0870 3.1998 16 6 8.2490 -0.9321 3.5000 17 7 7.4281 -1.8470 3.0293 18 14 8.9779 -1.1217 5.2094 19 1 9.8644 0.0335 5.5004 20 1 7.8833 -1.1711 6.2116 21 1 9.7660 -2.3787 5.2748 22 6 8.7533 -1.1542 0.6688 23 6 10.2379 -1.2917 0.4500 24 8 10.9880 -0.4256 0.8338 25 8 10.7272 -2.3768 -0.1704 26 6 5.6932 0.8248 -0.7250 27 6 4.3152 0.8172 -0.8349 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.5489 2.1252 -1.3969 34 1 1.9988 3.1541 -1.3074 35 1 2.0699 1.5875 -2.1492 36 1 3.5419 2.5644 1.9448 37 1 5.9960 2.5678 2.1470 38 1 7.2014 -2.6195 3.5703 39 1 8.3965 -1.9873 1.2743 40 1 8.2421 -1.1595 -0.2939 41 1 11.6861 -2.4205 -0.2875 42 1 6.2975 0.3390 -1.4767 43 1 3.8431 0.3261 -1.6731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736890838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -167.548694 kcal Electronic energy + Delta-G solvation = -28479.126224 eV Core-core repulsion = 24422.266529 eV Total energy + Delta-G solvation = -4056.859695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.05982 -40.51730 -37.94547 -37.69464 -37.03381 -36.69736 -36.52574 -33.56409 -32.17299 -31.91109 -29.65758 -29.53392 -26.21527 -25.81811 -23.95872 -23.26407 -22.69623 -20.84686 -20.40943 -19.36338 -19.00668 -18.80099 -18.15439 -17.19906 -16.97762 -16.60152 -16.51043 -16.45003 -15.98840 -15.52111 -15.39903 -15.09785 -14.78140 -14.41901 -14.27920 -13.92162 -13.91383 -13.74976 -13.46933 -13.18272 -13.09902 -12.91884 -12.87959 -12.84946 -12.63463 -12.57578 -12.52913 -12.31592 -12.18451 -12.07955 -11.93000 -11.63877 -11.61918 -11.49687 -11.27277 -11.13055 -9.97752 -9.91455 -9.82522 -8.47897 -6.10935 -0.29237 0.04742 0.42522 1.37376 1.42967 1.49030 1.62225 2.09345 2.33377 2.49947 2.70459 2.87063 3.22384 3.58869 3.65889 3.80916 4.02450 4.11557 4.16487 4.18812 4.39392 4.44200 4.48967 4.54732 4.62057 4.70818 4.78388 4.83775 4.88807 5.00793 5.07138 5.13454 5.15950 5.18751 5.23388 5.31863 5.33518 5.37552 5.51762 5.54722 5.63180 5.71190 6.01562 6.31354 6.71676 7.13616 7.21466 8.51937 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.004055 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.149582 B = 6903.120989 C = 7634.211358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.052 4.052 4 H 0.088 0.912 5 C -0.143 4.143 6 C -0.034 4.034 7 C -0.146 4.146 8 C -0.037 4.037 9 C -0.678 4.678 10 S 2.575 3.425 11 O -1.009 7.009 12 O -1.017 7.017 13 N -0.808 5.808 14 C -0.277 4.277 15 H 0.091 0.909 16 C 0.013 3.987 17 N -0.845 5.845 18 Si 0.974 3.026 19 H -0.271 1.271 20 H -0.265 1.265 21 H -0.268 1.268 22 C 0.126 3.874 23 C 0.466 3.534 24 O -0.544 6.544 25 O -0.509 6.509 26 C -0.043 4.043 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.285 0.715 39 H 0.150 0.850 40 H 0.115 0.885 41 H 0.421 0.579 42 H 0.135 0.865 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.556 -2.614 -5.025 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.070 4.070 4 H 0.106 0.894 5 C -0.200 4.200 6 C -0.035 4.035 7 C -0.164 4.164 8 C -0.056 4.056 9 C -0.763 4.763 10 S 2.680 3.320 11 O -1.000 7.000 12 O -1.007 7.007 13 N -0.632 5.632 14 C -0.421 4.421 15 H 0.109 0.891 16 C -0.198 4.198 17 N -0.483 5.483 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.190 1.190 21 H -0.192 1.192 22 C -0.003 4.003 23 C 0.307 3.693 24 O -0.433 6.433 25 O -0.322 6.322 26 C -0.063 4.063 27 C -0.155 4.155 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.139 0.861 38 H 0.096 0.904 39 H 0.166 0.834 40 H 0.133 0.867 41 H 0.282 0.718 42 H 0.152 0.848 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.358 -1.761 -5.393 13.598 hybrid contribution 0.821 -0.128 0.862 1.197 sum -11.538 -1.889 -4.531 12.538 Atomic orbital electron populations 1.21799 0.94045 1.02205 1.02533 1.21576 0.97087 0.94648 1.02078 1.20326 0.88233 0.97969 1.00517 0.89403 1.21897 1.02517 1.00020 0.95582 1.20453 0.97086 0.93148 0.92789 1.21428 0.93784 1.01708 0.99497 1.20939 0.95011 0.93898 0.95792 1.31456 1.28970 1.11652 1.04255 1.08225 0.75513 0.75762 0.72458 1.93323 1.84187 1.52817 1.69641 1.93327 1.80159 1.86638 1.40596 1.52921 1.71582 1.24250 1.14430 1.19684 1.39886 1.02174 0.80370 0.89099 1.26244 0.94291 0.96470 1.02769 1.69902 1.27177 1.11686 1.39584 0.85157 0.78820 0.78843 0.77506 1.19560 1.18964 1.19249 1.20931 0.87263 0.92240 0.99903 1.24658 0.93782 0.78318 0.72547 1.90633 1.61147 1.42801 1.48754 1.84492 1.32450 1.43278 1.72014 1.21025 0.96350 0.94241 0.94638 1.21319 0.92595 1.01061 1.00513 0.92291 0.92459 0.91329 0.91430 0.93171 0.90024 0.93105 0.92151 0.83443 0.86097 0.90435 0.83379 0.86695 0.71782 0.84753 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.12 -2.13 5.14 30.59 0.16 -1.97 16 3 C -0.05 -1.02 2.56 -11.54 -0.03 -1.05 16 4 H 0.09 1.58 7.88 -2.39 -0.02 1.56 16 5 C -0.14 -2.33 8.76 71.98 0.63 -1.70 16 6 C -0.03 -0.96 4.78 -19.87 -0.09 -1.06 16 7 C -0.15 -4.66 9.67 22.27 0.22 -4.44 16 8 C -0.04 -1.49 9.52 22.27 0.21 -1.27 16 9 C -0.68 -29.10 5.97 22.27 0.13 -28.97 16 10 S 2.58 128.33 5.61 -56.49 -0.32 128.01 16 11 O -1.01 -56.07 16.16 -128.00 -2.07 -58.14 16 12 O -1.02 -52.06 16.23 -128.00 -2.08 -54.14 16 13 N -0.81 -40.11 2.39 -347.17 -0.83 -40.94 16 14 C -0.28 -14.33 8.97 84.03 0.75 -13.57 16 15 H 0.09 4.97 7.40 -2.91 -0.02 4.95 16 16 C 0.01 0.60 4.98 84.86 0.42 1.02 16 17 N -0.85 -39.16 11.27 21.65 0.24 -38.92 16 18 Si 0.97 38.42 29.62 68.60 2.03 40.45 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 22 C 0.13 5.52 5.56 85.63 0.48 5.99 16 23 C 0.47 19.97 8.36 71.24 0.60 20.56 16 24 O -0.54 -27.17 17.06 21.96 0.37 -26.79 16 25 O -0.51 -16.34 13.42 -51.46 -0.69 -17.03 16 26 C -0.04 -1.59 9.52 22.27 0.21 -1.38 16 27 C -0.14 -4.04 8.76 22.27 0.20 -3.84 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.78 6.57 -2.38 -0.02 0.76 16 31 H 0.07 1.20 7.57 -2.39 -0.02 1.18 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.00 6.56 -2.39 -0.02 0.98 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.96 7.39 -2.38 -0.02 0.95 16 36 H 0.15 3.78 7.95 -2.91 -0.02 3.76 16 37 H 0.12 5.01 7.62 -2.91 -0.02 4.99 16 38 H 0.29 12.10 8.31 -92.71 -0.77 11.33 16 39 H 0.15 6.53 5.31 -2.39 -0.01 6.52 16 40 H 0.12 4.50 7.58 -2.39 -0.02 4.48 16 41 H 0.42 9.21 9.10 -74.06 -0.67 8.54 16 42 H 0.13 4.65 7.61 -2.91 -0.02 4.63 16 43 H 0.15 3.44 7.16 -2.91 -0.02 3.42 16 Total: -1.00 -69.69 371.89 1.62 -68.08 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.37 Total: 32.44 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 4.58 Total: -33.02 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -0.58 Total: -79.86 kcal Atomic # 8 Polarization: -151.64 SS G_CDS: -4.46 Total: -156.10 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 128.33 SS G_CDS: -0.32 Total: 128.01 kcal Total: -69.69 1.62 -68.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736890838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.470 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds