Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 N 1.46503 * 109.47414 * 239.99602 * 2 1 3 5 5 S 1.65601 * 119.99804 * 67.18325 * 4 2 1 6 6 C 1.81401 * 104.45085 * 68.57679 * 5 4 2 7 7 O 1.42096 * 104.27887 * 184.65200 * 5 4 2 8 8 O 1.42101 * 104.27717 * 312.50639 * 5 4 2 9 9 C 1.50699 * 109.47213 * 119.99709 * 2 1 3 10 10 O 1.20830 * 120.00301 * 265.00446 * 9 2 1 11 11 O 1.34234 * 120.00012 * 84.99986 * 9 2 1 12 12 C 1.45205 * 117.00165 * 180.02562 * 11 9 2 13 13 C 1.50700 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74829 * 269.72545 * 13 12 11 15 15 C 1.37620 * 120.24546 * 179.72607 * 14 13 12 16 16 C 1.40711 * 119.74258 * 0.56909 * 15 14 13 17 17 C 1.41403 * 120.24348 * 179.68632 * 16 15 14 18 18 H 1.07995 * 119.99610 * 208.54781 * 17 16 15 19 19 C 1.39945 * 120.00082 * 28.54057 * 17 16 15 20 20 N 1.30827 * 119.99866 * 16.81995 * 19 17 16 21 21 Si 1.86797 * 120.00150 * 196.81707 * 19 17 16 22 22 H 1.48501 * 109.46632 * 90.00445 * 21 19 17 23 23 H 1.48499 * 109.46924 * 209.99992 * 21 19 17 24 24 H 1.48499 * 109.46992 * 330.00315 * 21 19 17 25 25 C 1.40719 * 119.51623 * 359.70332 * 16 15 14 26 26 C 1.37615 * 119.73908 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47446 * 292.19797 * 1 2 3 28 28 H 1.08998 * 109.47192 * 52.20447 * 1 2 3 29 29 H 1.09003 * 109.46822 * 172.20149 * 1 2 3 30 30 H 1.09005 * 109.47018 * 191.80375 * 3 2 1 31 31 H 1.08994 * 109.46680 * 311.80183 * 3 2 1 32 32 H 1.08998 * 109.47106 * 71.80463 * 3 2 1 33 33 H 0.96999 * 120.00449 * 247.18498 * 4 2 1 34 34 H 1.09004 * 109.46950 * 49.76763 * 6 5 4 35 35 H 1.08998 * 109.47064 * 169.76862 * 6 5 4 36 36 H 1.09000 * 109.46983 * 289.77011 * 6 5 4 37 37 H 1.08996 * 109.46663 * 300.00171 * 12 11 9 38 38 H 1.09000 * 109.46717 * 59.99877 * 12 11 9 39 39 H 1.07998 * 119.87191 * 359.97438 * 14 13 12 40 40 H 1.07998 * 120.12828 * 180.27976 * 15 14 13 41 41 H 0.96997 * 120.00408 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.12727 * 179.97438 * 25 16 15 43 43 H 1.08008 * 119.87258 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.7700 -0.0290 -2.6937 6 6 2.8207 1.4497 -2.7151 7 8 2.2676 -1.0074 -3.5961 8 8 0.3965 0.3353 -2.6925 9 6 2.0323 -0.7103 1.2305 10 8 2.3196 -0.0772 2.2187 11 8 2.1605 -2.0465 1.2288 12 6 2.6496 -2.6635 2.4489 13 6 2.7266 -4.1567 2.2608 14 6 1.6331 -4.9474 2.5786 15 6 1.6903 -6.3115 2.4055 16 6 2.8685 -6.9041 1.9152 17 6 2.9412 -8.3053 1.7396 18 1 3.8923 -8.8108 1.8187 19 6 1.7807 -9.0370 1.4633 20 7 0.7041 -8.4226 1.0449 21 14 1.7688 -10.8909 1.6919 22 1 1.3453 -11.2160 3.0776 23 1 0.8191 -11.5024 0.7278 24 1 3.1323 -11.4280 1.4520 25 6 3.9742 -6.0923 1.6013 26 6 3.8925 -4.7298 1.7770 27 1 -0.3634 0.3883 0.9515 28 1 -0.3633 0.6298 -0.8120 29 1 -0.3633 -1.0182 -0.1394 30 1 3.1095 1.4497 -0.2102 31 1 1.5153 2.0133 -0.7661 32 1 1.8585 1.8920 0.9763 33 1 2.4871 -1.5356 -1.1109 34 1 3.8264 1.1855 -2.3881 35 1 2.8616 1.8516 -3.7275 36 1 2.4054 2.2002 -2.0427 37 1 3.6410 -2.2744 2.6805 38 1 1.9690 -2.4355 3.2692 39 1 0.7317 -4.4907 2.9597 40 1 0.8357 -6.9252 2.6495 41 1 -0.1002 -8.9297 0.8530 42 1 4.8836 -6.5368 1.2247 43 1 4.7400 -4.1047 1.5372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -133.683226 kcal Electronic energy + Delta-G solvation = -27649.168621 eV Core-core repulsion = 23593.777443 eV Total energy + Delta-G solvation = -4055.391178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.66245 -37.99275 -37.50931 -36.78706 -36.19092 -36.04884 -33.86483 -30.98698 -30.85981 -30.15459 -29.43314 -27.44476 -27.23951 -24.76173 -23.30231 -21.14199 -20.38162 -20.12178 -19.48819 -18.49655 -17.62399 -17.40040 -16.66923 -16.44482 -16.08464 -15.79970 -15.37744 -14.90618 -14.48722 -14.20434 -13.97339 -13.93192 -13.68333 -13.48092 -13.15181 -12.97225 -12.61484 -12.44527 -12.35755 -12.28127 -12.19941 -12.07313 -11.89236 -11.80966 -11.76082 -11.54596 -11.26086 -11.23210 -11.03450 -10.86565 -10.50456 -10.31137 -10.22546 -9.92053 -9.71518 -9.49192 -9.27158 -7.59932 -7.47137 -6.87129 -4.49030 0.01140 2.06082 2.30880 2.54487 2.87777 2.96327 3.03124 3.06079 3.21981 3.60340 3.86118 3.90308 4.17549 4.41736 4.45616 4.51206 4.64765 4.85415 4.88322 5.08768 5.32541 5.36489 5.53276 5.56719 5.58008 5.62141 5.66677 5.85525 5.97717 6.16495 6.18427 6.26293 6.67372 6.73897 6.83222 6.97150 7.11971 7.21036 7.48441 7.67701 7.85614 7.93014 7.94197 8.16290 8.50888 8.76295 8.83028 10.08486 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.002691 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.439043 B =10404.182193 C =11268.372951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.195 3.805 3 C -0.187 4.187 4 N -1.107 6.107 5 S 2.614 3.386 6 C -0.689 4.689 7 O -0.952 6.952 8 O -0.951 6.951 9 C 0.465 3.535 10 O -0.509 6.509 11 O -0.342 6.342 12 C 0.135 3.865 13 C -0.236 4.236 14 C -0.075 4.075 15 C -0.166 4.166 16 C 0.122 3.878 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.786 5.786 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.227 4.227 26 C -0.064 4.064 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.431 0.569 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 18.011 -4.089 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.104 3.896 3 C -0.245 4.245 4 N -0.869 5.869 5 S 2.705 3.295 6 C -0.838 4.838 7 O -0.942 6.942 8 O -0.941 6.941 9 C 0.306 3.694 10 O -0.398 6.398 11 O -0.258 6.258 12 C 0.064 3.936 13 C -0.238 4.238 14 C -0.093 4.093 15 C -0.185 4.185 16 C 0.119 3.881 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.246 4.246 26 C -0.083 4.083 27 H 0.091 0.909 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.359 17.924 -4.532 18.491 hybrid contribution 0.670 -0.759 0.499 1.129 sum 1.029 17.165 -4.033 17.662 Atomic orbital electron populations 1.22618 0.90538 1.05772 1.04699 1.20005 0.96547 0.91362 0.81651 1.22836 1.02456 0.93177 1.06058 1.55711 1.74195 1.35420 1.21556 1.04799 0.75801 0.76276 0.72582 1.31086 1.17934 1.22938 1.11877 1.93649 1.82220 1.56584 1.61778 1.93590 1.30096 1.84927 1.85505 1.23282 0.74589 0.82541 0.89022 1.90648 1.46333 1.67765 1.35024 1.86708 1.75910 1.20020 1.43187 1.21811 0.97979 0.91069 0.82758 1.18649 0.96981 0.90309 1.17842 1.20527 0.95426 0.94338 0.99046 1.21201 0.99832 0.93108 1.04367 1.17687 0.90823 0.93145 0.86420 1.19665 0.94722 0.92194 1.42304 0.90129 1.25948 0.94800 1.01430 0.92172 1.69815 1.02702 1.38756 1.29801 0.86270 0.79361 0.81786 0.79103 1.19191 1.20202 1.18533 1.21006 1.00192 0.92763 1.10646 1.20392 0.95557 0.94825 0.97483 0.90937 0.87632 0.90204 0.90345 0.90184 0.88112 0.73186 0.85028 0.85392 0.84367 0.91920 0.91833 0.89293 0.86722 0.90594 0.88634 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.05 37.15 0.30 -1.64 16 2 C 0.19 2.14 1.08 -132.97 -0.14 1.99 16 3 C -0.19 -1.44 6.56 37.16 0.24 -1.19 16 4 N -1.11 -11.80 5.42 -0.40 0.00 -11.80 16 5 S 2.61 25.15 5.78 -107.50 -0.62 24.52 16 6 C -0.69 -3.55 9.28 101.05 0.94 -2.61 16 7 O -0.95 -13.09 18.08 -57.54 -1.04 -14.13 16 8 O -0.95 -11.21 14.98 -57.54 -0.86 -12.07 16 9 C 0.46 6.71 6.76 36.01 0.24 6.95 16 10 O -0.51 -8.08 15.59 -18.75 -0.29 -8.37 16 11 O -0.34 -5.79 9.35 -39.27 -0.37 -6.15 16 12 C 0.14 2.41 5.58 36.01 0.20 2.61 16 13 C -0.24 -5.01 5.54 -104.33 -0.58 -5.58 16 14 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 15 C -0.17 -4.17 8.67 -38.87 -0.34 -4.51 16 16 C 0.12 3.15 5.53 -106.82 -0.59 2.56 16 17 C -0.46 -11.83 9.04 -37.74 -0.34 -12.17 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.08 1.85 5.13 -17.34 -0.09 1.76 16 20 N -0.79 -19.92 11.18 55.55 0.62 -19.30 16 21 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 25 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 16 26 C -0.06 -1.38 9.67 -39.66 -0.38 -1.77 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.11 1.07 5.78 -51.93 -0.30 0.77 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.49 7.26 -51.93 -0.38 0.12 16 31 H 0.08 0.41 5.66 -51.93 -0.29 0.12 16 32 H 0.10 0.80 7.42 -51.93 -0.39 0.42 16 33 H 0.43 4.96 7.95 -34.47 -0.27 4.69 16 34 H 0.13 0.54 8.07 -51.92 -0.42 0.12 16 35 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.14 0.51 4.93 -51.92 -0.26 0.26 16 37 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.11 2.97 6.44 -52.49 -0.34 2.63 16 41 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 42 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -32.35 366.06 -8.95 -41.29 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.57 Total: 8.78 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.30 Total: -21.44 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.62 Total: -31.10 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -2.56 Total: -40.73 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 25.15 SS G_CDS: -0.62 Total: 24.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.35 -8.95 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.390 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds