Wall clock time and date at job start Sat Apr 11 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 N 1.46503 * 109.47414 * 239.99602 * 2 1 3 5 5 S 1.65601 * 119.99804 * 67.18325 * 4 2 1 6 6 C 1.81401 * 104.45085 * 68.57679 * 5 4 2 7 7 O 1.42096 * 104.27887 * 184.65200 * 5 4 2 8 8 O 1.42101 * 104.27717 * 312.50639 * 5 4 2 9 9 C 1.50699 * 109.47213 * 119.99709 * 2 1 3 10 10 O 1.20830 * 120.00301 * 265.00446 * 9 2 1 11 11 O 1.34234 * 120.00012 * 84.99986 * 9 2 1 12 12 C 1.45205 * 117.00165 * 180.02562 * 11 9 2 13 13 C 1.50700 * 109.46929 * 179.97438 * 12 11 9 14 14 C 1.38637 * 119.74829 * 269.72545 * 13 12 11 15 15 C 1.37620 * 120.24546 * 179.72607 * 14 13 12 16 16 C 1.40711 * 119.74258 * 0.56909 * 15 14 13 17 17 C 1.41403 * 120.24348 * 179.68632 * 16 15 14 18 18 H 1.07995 * 119.99610 * 208.54781 * 17 16 15 19 19 C 1.39945 * 120.00082 * 28.54057 * 17 16 15 20 20 N 1.30827 * 119.99866 * 16.81995 * 19 17 16 21 21 Si 1.86797 * 120.00150 * 196.81707 * 19 17 16 22 22 H 1.48501 * 109.46632 * 90.00445 * 21 19 17 23 23 H 1.48499 * 109.46924 * 209.99992 * 21 19 17 24 24 H 1.48499 * 109.46992 * 330.00315 * 21 19 17 25 25 C 1.40719 * 119.51623 * 359.70332 * 16 15 14 26 26 C 1.37615 * 119.73908 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47446 * 292.19797 * 1 2 3 28 28 H 1.08998 * 109.47192 * 52.20447 * 1 2 3 29 29 H 1.09003 * 109.46822 * 172.20149 * 1 2 3 30 30 H 1.09005 * 109.47018 * 191.80375 * 3 2 1 31 31 H 1.08994 * 109.46680 * 311.80183 * 3 2 1 32 32 H 1.08998 * 109.47106 * 71.80463 * 3 2 1 33 33 H 0.96999 * 120.00449 * 247.18498 * 4 2 1 34 34 H 1.09004 * 109.46950 * 49.76763 * 6 5 4 35 35 H 1.08998 * 109.47064 * 169.76862 * 6 5 4 36 36 H 1.09000 * 109.46983 * 289.77011 * 6 5 4 37 37 H 1.08996 * 109.46663 * 300.00171 * 12 11 9 38 38 H 1.09000 * 109.46717 * 59.99877 * 12 11 9 39 39 H 1.07998 * 119.87191 * 359.97438 * 14 13 12 40 40 H 1.07998 * 120.12828 * 180.27976 * 15 14 13 41 41 H 0.96997 * 120.00408 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.12727 * 179.97438 * 25 16 15 43 43 H 1.08008 * 119.87258 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.7700 -0.0290 -2.6937 6 6 2.8207 1.4497 -2.7151 7 8 2.2676 -1.0074 -3.5961 8 8 0.3965 0.3353 -2.6925 9 6 2.0323 -0.7103 1.2305 10 8 2.3196 -0.0772 2.2187 11 8 2.1605 -2.0465 1.2288 12 6 2.6496 -2.6635 2.4489 13 6 2.7266 -4.1567 2.2608 14 6 1.6331 -4.9474 2.5786 15 6 1.6903 -6.3115 2.4055 16 6 2.8685 -6.9041 1.9152 17 6 2.9412 -8.3053 1.7396 18 1 3.8923 -8.8108 1.8187 19 6 1.7807 -9.0370 1.4633 20 7 0.7041 -8.4226 1.0449 21 14 1.7688 -10.8909 1.6919 22 1 1.3453 -11.2160 3.0776 23 1 0.8191 -11.5024 0.7278 24 1 3.1323 -11.4280 1.4520 25 6 3.9742 -6.0923 1.6013 26 6 3.8925 -4.7298 1.7770 27 1 -0.3634 0.3883 0.9515 28 1 -0.3633 0.6298 -0.8120 29 1 -0.3633 -1.0182 -0.1394 30 1 3.1095 1.4497 -0.2102 31 1 1.5153 2.0133 -0.7661 32 1 1.8585 1.8920 0.9763 33 1 2.4871 -1.5356 -1.1109 34 1 3.8264 1.1855 -2.3881 35 1 2.8616 1.8516 -3.7275 36 1 2.4054 2.2002 -2.0427 37 1 3.6410 -2.2744 2.6805 38 1 1.9690 -2.4355 3.2692 39 1 0.7317 -4.4907 2.9597 40 1 0.8357 -6.9252 2.6495 41 1 -0.1002 -8.9297 0.8530 42 1 4.8836 -6.5368 1.2247 43 1 4.7400 -4.1047 1.5372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776112977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:20 Heat of formation + Delta-G solvation = -155.551358 kcal Electronic energy + Delta-G solvation = -27650.116895 eV Core-core repulsion = 23593.777443 eV Total energy + Delta-G solvation = -4056.339452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83160 -39.59202 -38.55373 -37.83752 -37.31815 -36.94729 -35.66348 -32.60551 -31.69932 -31.26460 -30.75697 -29.04910 -27.97289 -26.18057 -24.66484 -22.97367 -21.88957 -21.38917 -20.28075 -19.46758 -19.26182 -18.58869 -17.77174 -17.37943 -17.24686 -17.14186 -16.67357 -16.01598 -15.78748 -15.60734 -15.40162 -14.75163 -14.60278 -14.51131 -14.19197 -13.98396 -13.91906 -13.87564 -13.68265 -13.54232 -13.40633 -13.16927 -12.95184 -12.89789 -12.73812 -12.64407 -12.59103 -12.48169 -12.41187 -12.11643 -11.93708 -11.72810 -11.56137 -11.32366 -11.28030 -11.06939 -10.70948 -9.44152 -9.32111 -8.68875 -6.41404 -0.69019 0.69987 0.98464 1.09246 1.37231 1.41253 1.51241 1.70110 1.81288 2.19111 2.69816 2.91136 3.23219 3.34641 3.63504 3.77133 3.82469 3.94310 4.06193 4.10080 4.12236 4.22160 4.45198 4.48413 4.54016 4.54539 4.69012 4.81128 4.85209 4.98876 4.99260 5.11949 5.19640 5.26910 5.29435 5.36657 5.45757 5.64503 5.83977 5.86191 6.04458 6.10929 6.31669 6.63123 6.64705 6.88034 6.95574 8.29426 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.002691 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.439043 B =10404.182193 C =11268.372951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.198 3.802 3 C -0.192 4.192 4 N -1.114 6.114 5 S 2.611 3.389 6 C -0.661 4.661 7 O -1.002 7.002 8 O -0.981 6.981 9 C 0.465 3.535 10 O -0.521 6.521 11 O -0.357 6.357 12 C 0.140 3.860 13 C -0.227 4.227 14 C -0.081 4.081 15 C -0.189 4.189 16 C 0.090 3.910 17 C -0.498 4.498 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.823 5.823 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.241 4.241 26 C -0.065 4.065 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.425 0.575 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.289 0.711 42 H 0.103 0.897 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 20.702 -4.339 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.108 3.892 3 C -0.249 4.249 4 N -0.874 5.874 5 S 2.709 3.291 6 C -0.815 4.815 7 O -0.993 6.993 8 O -0.971 6.971 9 C 0.307 3.693 10 O -0.410 6.410 11 O -0.273 6.273 12 C 0.067 3.933 13 C -0.228 4.228 14 C -0.100 4.100 15 C -0.209 4.209 16 C 0.088 3.912 17 C -0.527 4.527 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.449 5.449 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.261 4.261 26 C -0.083 4.083 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.261 0.739 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.377 20.605 -4.777 21.196 hybrid contribution 0.375 -1.315 0.577 1.484 sum 1.752 19.290 -4.200 19.820 Atomic orbital electron populations 1.22667 0.90859 1.04697 1.05648 1.20176 0.96288 0.92789 0.79978 1.22993 1.04090 0.90598 1.07246 1.55712 1.74276 1.35690 1.21679 1.04672 0.75756 0.77200 0.71515 1.30839 1.17177 1.19174 1.14342 1.93588 1.82810 1.59791 1.63064 1.93544 1.32664 1.85381 1.85528 1.23946 0.73886 0.81388 0.90065 1.90642 1.46887 1.67617 1.35827 1.86665 1.76360 1.21859 1.42396 1.21639 0.99321 0.88921 0.83372 1.19007 0.96043 0.92418 1.15303 1.20780 0.96761 0.93671 0.98774 1.21162 0.99488 0.94159 1.06043 1.18035 0.91842 0.93954 0.87398 1.19903 0.95480 0.92829 1.44509 0.90247 1.26793 0.93985 1.06137 0.91143 1.69873 1.03462 1.40715 1.30842 0.85174 0.79520 0.75663 0.79197 1.18601 1.19363 1.18043 1.21225 1.00013 0.93842 1.11000 1.20738 0.96758 0.94330 0.96448 0.89948 0.86651 0.92415 0.88347 0.87304 0.88119 0.73928 0.82976 0.83010 0.81998 0.90174 0.91154 0.87622 0.88530 0.90018 0.87923 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.05 71.98 0.58 -3.15 16 2 C 0.20 3.94 1.08 2.85 0.00 3.94 16 3 C -0.19 -2.20 6.56 71.98 0.47 -1.73 16 4 N -1.11 -22.29 5.42 -155.19 -0.84 -23.13 16 5 S 2.61 46.31 5.78 -56.49 -0.33 45.99 16 6 C -0.66 -3.75 9.28 113.37 1.05 -2.70 16 7 O -1.00 -27.49 18.08 -127.65 -2.31 -29.80 16 8 O -0.98 -22.07 14.98 -127.65 -1.91 -23.98 16 9 C 0.47 12.56 6.76 71.24 0.48 13.04 16 10 O -0.52 -15.31 15.59 21.95 0.34 -14.97 16 11 O -0.36 -11.60 9.35 -51.45 -0.48 -12.08 16 12 C 0.14 4.73 5.58 71.24 0.40 5.13 16 13 C -0.23 -9.43 5.54 -19.68 -0.11 -9.54 16 14 C -0.08 -3.74 9.67 22.22 0.21 -3.53 16 15 C -0.19 -9.92 8.67 22.73 0.20 -9.72 16 16 C 0.09 4.84 5.53 -21.29 -0.12 4.72 16 17 C -0.50 -26.71 9.04 23.46 0.21 -26.50 16 18 H 0.08 4.09 7.90 -2.91 -0.02 4.06 16 19 C 0.03 1.76 5.13 85.26 0.44 2.19 16 20 N -0.82 -43.42 11.18 21.83 0.24 -43.18 16 21 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 25 C -0.24 -11.64 9.80 22.73 0.22 -11.42 16 26 C -0.06 -2.73 9.67 22.22 0.21 -2.52 16 27 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.12 2.17 5.78 -2.39 -0.01 2.16 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 0.76 7.26 -2.38 -0.02 0.74 16 31 H 0.11 0.60 5.66 -2.39 -0.01 0.59 16 32 H 0.10 1.24 7.42 -2.39 -0.02 1.22 16 33 H 0.43 9.61 7.95 -96.75 -0.77 8.84 16 34 H 0.15 0.43 8.07 -2.39 -0.02 0.41 16 35 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.16 0.25 4.93 -2.39 -0.01 0.24 16 37 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 39 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 40 H 0.10 5.31 6.44 -2.91 -0.02 5.29 16 41 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 42 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 43 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -73.58 366.06 1.29 -72.29 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.28 Total: 30.50 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 4.26 Total: -41.77 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.60 Total: -66.31 kcal Atomic # 8 Polarization: -76.47 SS G_CDS: -4.36 Total: -80.83 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.33 Total: 45.99 kcal Total: -73.58 1.29 -72.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.259 kcal (2) G-P(sol) polarization free energy of solvation -73.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds