Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00126 * 2 1 4 4 C 1.53008 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47650 * 59.99953 * 3 2 1 6 6 O 1.21283 * 119.99895 * 214.07106 * 5 3 2 7 7 N 1.34780 * 119.99491 * 34.06702 * 5 3 2 8 8 S 1.65599 * 119.99561 * 179.73067 * 7 5 3 9 9 O 1.42100 * 104.27716 * 181.34713 * 8 7 5 10 10 O 1.42106 * 104.27652 * 309.20105 * 8 7 5 11 11 C 1.81404 * 104.45215 * 65.27341 * 8 7 5 12 12 C 1.53001 * 109.47121 * 180.02562 * 11 8 7 13 13 C 1.50698 * 109.46991 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00138 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99968 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47022 * 90.00561 * 17 15 13 19 19 H 1.48496 * 109.46904 * 210.00408 * 17 15 13 20 20 H 1.48500 * 109.47185 * 330.00313 * 17 15 13 21 21 C 1.50700 * 109.47175 * 299.99437 * 3 2 1 22 22 C 1.38240 * 119.99420 * 77.94819 * 21 3 2 23 23 C 1.38242 * 119.99575 * 179.78906 * 22 21 3 24 24 C 1.38235 * 120.00170 * 0.44351 * 23 22 21 25 25 C 1.38231 * 119.99612 * 359.81025 * 24 23 22 26 26 C 1.38229 * 120.00650 * 258.22474 * 21 3 2 27 27 H 1.08995 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46874 * 300.00555 * 1 2 3 29 29 H 1.08996 * 109.46994 * 59.99954 * 1 2 3 30 30 H 1.09005 * 109.46589 * 299.99718 * 4 3 2 31 31 H 1.08997 * 109.47009 * 59.99394 * 4 3 2 32 32 H 1.08997 * 109.47294 * 180.02562 * 4 3 2 33 33 H 0.96993 * 119.99890 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.46950 * 300.00023 * 11 8 7 35 35 H 1.08999 * 109.46792 * 59.99905 * 11 8 7 36 36 H 1.09005 * 109.46767 * 300.00374 * 12 11 8 37 37 H 1.09001 * 109.47130 * 59.99510 * 12 11 8 38 38 H 0.97002 * 119.99763 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99979 * 0.02562 * 22 21 3 40 40 H 1.07995 * 119.99796 * 180.28081 * 23 22 21 41 41 H 1.07988 * 120.00185 * 179.83605 * 24 23 22 42 42 H 1.08005 * 119.99858 * 179.97438 * 25 24 23 43 43 H 1.08009 * 119.99700 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5656 2.0534 1.2304 6 8 1.3874 3.2520 1.1801 7 7 1.3661 1.3902 2.3867 8 16 0.8840 2.2131 3.7405 9 8 0.8089 1.2150 4.7492 10 8 1.8055 3.2901 3.8427 11 6 -0.7721 2.8292 3.3300 12 6 -1.3317 3.6169 4.5163 13 6 -2.7078 4.1282 4.1755 14 1 -3.1398 3.9131 3.2093 15 6 -3.4148 4.8713 5.0968 16 7 -4.6155 5.3179 4.7993 17 14 -2.6673 5.2439 6.7678 18 1 -1.9053 6.5165 6.6965 19 1 -3.7493 5.3706 7.7769 20 1 -1.7530 4.1407 7.1582 21 6 1.5657 2.0532 -1.2305 22 6 0.3015 2.6102 -1.2817 23 6 -0.1047 3.3000 -2.4087 24 6 0.7498 3.4248 -3.4881 25 6 2.0119 2.8632 -3.4389 26 6 2.4198 2.1772 -2.3103 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8575 0.6435 0.8892 31 1 3.8568 0.6437 -0.8908 32 1 3.9789 2.1803 -0.0002 33 1 1.5090 0.4317 2.4270 34 1 -0.7117 3.4803 2.4580 35 1 -1.4287 1.9874 3.1102 36 1 -1.3920 2.9661 5.3887 37 1 -0.6750 4.4587 4.7358 38 1 -5.1130 5.8404 5.4476 39 1 -0.3673 2.5098 -0.4396 40 1 -1.0906 3.7391 -2.4469 41 1 0.4315 3.9613 -4.3696 42 1 2.6795 2.9604 -4.2824 43 1 3.4060 1.7385 -2.2719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -118.343699 kcal Electronic energy + Delta-G solvation = -28748.331397 eV Core-core repulsion = 24693.605390 eV Total energy + Delta-G solvation = -4054.726007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45511 -39.09658 -37.81549 -36.85138 -35.81426 -34.51590 -34.01344 -33.37404 -31.54626 -31.23180 -29.83370 -26.71916 -26.09432 -25.55185 -23.02095 -22.49220 -21.36251 -20.62043 -19.52633 -18.66935 -17.99705 -17.44945 -16.90677 -16.49851 -15.95730 -15.82952 -15.61002 -15.20338 -14.99139 -14.81260 -14.49676 -14.31395 -13.98919 -13.74307 -13.51159 -13.00983 -12.87566 -12.82910 -12.75370 -12.52288 -12.23592 -12.12984 -11.97840 -11.92184 -11.80739 -11.47587 -11.32405 -11.28269 -11.23353 -10.93079 -10.69605 -10.47552 -10.18956 -9.85218 -9.67837 -9.40160 -9.09616 -9.06276 -8.68733 -6.19125 -4.20810 0.28769 1.02683 1.20474 1.80197 2.49718 3.19034 3.25419 3.32436 3.35921 3.58779 3.76586 3.92750 4.10378 4.33591 4.39095 4.51376 4.75704 4.78579 4.80138 4.90650 4.99686 5.08445 5.12131 5.17361 5.22418 5.33289 5.37275 5.38470 5.44180 5.46288 5.68133 5.69716 5.80328 6.17372 6.21404 6.25785 6.31253 6.32638 6.61270 6.74034 6.75196 6.87785 7.24751 7.50044 8.32955 8.81046 9.40018 10.93110 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003738 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.007182 B = 7489.189475 C = 8619.684679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.357 6.357 3 C 0.146 3.854 4 C -0.142 4.142 5 C 0.514 3.486 6 O -0.468 6.468 7 N -1.052 6.052 8 S 2.559 3.441 9 O -0.950 6.950 10 O -0.936 6.936 11 C -0.570 4.570 12 C -0.005 4.005 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.869 3.131 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.109 4.109 22 C -0.090 4.090 23 C -0.118 4.118 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.096 4.096 27 H 0.100 0.900 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.434 0.566 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.973 -11.457 -16.458 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.275 6.275 3 C 0.102 3.898 4 C -0.199 4.199 5 C 0.298 3.702 6 O -0.338 6.338 7 N -0.815 5.815 8 S 2.659 3.341 9 O -0.941 6.941 10 O -0.926 6.926 11 C -0.704 4.704 12 C -0.044 4.044 13 C -0.558 4.558 14 H 0.097 0.903 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.695 3.305 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.110 4.110 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.114 4.114 27 H 0.119 0.881 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.270 0.730 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.374 -10.553 -15.653 23.727 hybrid contribution -0.480 0.022 0.537 0.721 sum 13.894 -10.531 -15.116 23.074 Atomic orbital electron populations 1.23241 0.80330 1.04198 1.01440 1.88053 1.20607 1.24391 1.94499 1.20550 0.96679 0.83380 0.89229 1.21898 0.89105 1.04272 1.04633 1.21175 0.75509 0.88236 0.85264 1.90948 1.45414 1.13245 1.84171 1.55401 1.75385 1.23702 1.27032 1.06874 0.79407 0.74707 0.73116 1.93605 1.88112 1.58724 1.53661 1.93610 1.60210 1.54833 1.83938 1.30200 1.16895 1.11669 1.11656 1.19434 0.99135 0.95124 0.90725 1.20782 0.97768 1.34046 1.03204 0.90345 1.24960 0.94665 0.94852 0.98479 1.69874 1.11479 1.35978 1.35838 0.86937 0.79564 0.79885 0.84149 1.19573 1.20668 1.18642 1.19722 0.95465 1.00675 0.95130 1.21132 0.95350 0.96148 0.98199 1.21179 1.00319 0.98737 0.93336 1.21241 0.94083 0.98903 0.98508 1.21130 0.96519 0.98562 0.98086 1.21055 0.99352 0.98383 0.92619 0.88137 0.93501 0.92131 0.90482 0.89443 0.89503 0.72980 0.84599 0.85403 0.94809 0.95101 0.92316 0.86097 0.85466 0.85857 0.85765 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.49 101.05 0.96 0.99 16 2 O -0.36 -3.49 9.66 -35.23 -0.34 -3.83 16 3 C 0.15 1.58 1.01 -92.92 -0.09 1.49 16 4 C -0.14 -1.19 7.74 37.16 0.29 -0.90 16 5 C 0.51 7.07 4.58 -10.98 -0.05 7.02 16 6 O -0.47 -8.02 13.33 -11.66 -0.16 -8.17 16 7 N -1.05 -13.72 4.68 31.22 0.15 -13.57 16 8 S 2.56 44.84 5.11 -107.50 -0.55 44.29 16 9 O -0.95 -17.93 18.08 -57.54 -1.04 -18.97 16 10 O -0.94 -19.55 17.03 -64.82 -1.10 -20.65 16 11 C -0.57 -10.76 5.83 37.16 0.22 -10.54 16 12 C 0.00 -0.11 4.05 -27.88 -0.11 -0.22 16 13 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.11 -1.22 4.34 -104.62 -0.45 -1.67 16 22 C -0.09 -1.08 6.28 -39.58 -0.25 -1.33 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.11 -1.01 10.05 -39.58 -0.40 -1.40 16 25 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 26 C -0.10 -0.90 9.12 -39.59 -0.36 -1.26 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.42 6.59 -51.93 -0.34 0.08 16 29 H 0.06 0.54 5.54 -51.93 -0.29 0.25 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.55 6.74 -51.93 -0.35 0.20 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.43 4.22 8.18 -34.47 -0.28 3.94 16 34 H 0.14 2.53 7.20 -51.92 -0.37 2.16 16 35 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 37 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.12 1.48 6.43 -52.49 -0.34 1.14 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 43 H 0.13 0.90 5.97 -52.48 -0.31 0.58 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -36.38 362.22 -8.56 -44.94 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.60 Total: 3.63 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -1.48 Total: -23.77 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.92 Total: -39.72 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -2.64 Total: -51.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 44.84 SS G_CDS: -0.55 Total: 44.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.38 -8.56 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.408 kcal (2) G-P(sol) polarization free energy of solvation -36.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds