Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00126 * 2 1 4 4 C 1.53008 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47650 * 59.99953 * 3 2 1 6 6 O 1.21283 * 119.99895 * 214.07106 * 5 3 2 7 7 N 1.34780 * 119.99491 * 34.06702 * 5 3 2 8 8 S 1.65599 * 119.99561 * 179.73067 * 7 5 3 9 9 O 1.42100 * 104.27716 * 181.34713 * 8 7 5 10 10 O 1.42106 * 104.27652 * 309.20105 * 8 7 5 11 11 C 1.81404 * 104.45215 * 65.27341 * 8 7 5 12 12 C 1.53001 * 109.47121 * 180.02562 * 11 8 7 13 13 C 1.50698 * 109.46991 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00138 * 179.97438 * 15 13 12 17 17 Si 1.86809 * 119.99968 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47022 * 90.00561 * 17 15 13 19 19 H 1.48496 * 109.46904 * 210.00408 * 17 15 13 20 20 H 1.48500 * 109.47185 * 330.00313 * 17 15 13 21 21 C 1.50700 * 109.47175 * 299.99437 * 3 2 1 22 22 C 1.38240 * 119.99420 * 77.94819 * 21 3 2 23 23 C 1.38242 * 119.99575 * 179.78906 * 22 21 3 24 24 C 1.38235 * 120.00170 * 0.44351 * 23 22 21 25 25 C 1.38231 * 119.99612 * 359.81025 * 24 23 22 26 26 C 1.38229 * 120.00650 * 258.22474 * 21 3 2 27 27 H 1.08995 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46874 * 300.00555 * 1 2 3 29 29 H 1.08996 * 109.46994 * 59.99954 * 1 2 3 30 30 H 1.09005 * 109.46589 * 299.99718 * 4 3 2 31 31 H 1.08997 * 109.47009 * 59.99394 * 4 3 2 32 32 H 1.08997 * 109.47294 * 180.02562 * 4 3 2 33 33 H 0.96993 * 119.99890 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.46950 * 300.00023 * 11 8 7 35 35 H 1.08999 * 109.46792 * 59.99905 * 11 8 7 36 36 H 1.09005 * 109.46767 * 300.00374 * 12 11 8 37 37 H 1.09001 * 109.47130 * 59.99510 * 12 11 8 38 38 H 0.97002 * 119.99763 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99979 * 0.02562 * 22 21 3 40 40 H 1.07995 * 119.99796 * 180.28081 * 23 22 21 41 41 H 1.07988 * 120.00185 * 179.83605 * 24 23 22 42 42 H 1.08005 * 119.99858 * 179.97438 * 25 24 23 43 43 H 1.08009 * 119.99700 * 359.97438 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5656 2.0534 1.2304 6 8 1.3874 3.2520 1.1801 7 7 1.3661 1.3902 2.3867 8 16 0.8840 2.2131 3.7405 9 8 0.8089 1.2150 4.7492 10 8 1.8055 3.2901 3.8427 11 6 -0.7721 2.8292 3.3300 12 6 -1.3317 3.6169 4.5163 13 6 -2.7078 4.1282 4.1755 14 1 -3.1398 3.9131 3.2093 15 6 -3.4148 4.8713 5.0968 16 7 -4.6155 5.3179 4.7993 17 14 -2.6673 5.2439 6.7678 18 1 -1.9053 6.5165 6.6965 19 1 -3.7493 5.3706 7.7769 20 1 -1.7530 4.1407 7.1582 21 6 1.5657 2.0532 -1.2305 22 6 0.3015 2.6102 -1.2817 23 6 -0.1047 3.3000 -2.4087 24 6 0.7498 3.4248 -3.4881 25 6 2.0119 2.8632 -3.4389 26 6 2.4198 2.1772 -2.3103 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8575 0.6435 0.8892 31 1 3.8568 0.6437 -0.8908 32 1 3.9789 2.1803 -0.0002 33 1 1.5090 0.4317 2.4270 34 1 -0.7117 3.4803 2.4580 35 1 -1.4287 1.9874 3.1102 36 1 -1.3920 2.9661 5.3887 37 1 -0.6750 4.4587 4.7358 38 1 -5.1130 5.8404 5.4476 39 1 -0.3673 2.5098 -0.4396 40 1 -1.0906 3.7391 -2.4469 41 1 0.4315 3.9613 -4.3696 42 1 2.6795 2.9604 -4.2824 43 1 3.4060 1.7385 -2.2719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -145.441214 kcal Electronic energy + Delta-G solvation = -28749.506433 eV Core-core repulsion = 24693.605390 eV Total energy + Delta-G solvation = -4055.901043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41142 -40.01407 -38.68836 -38.30840 -37.35422 -36.01507 -35.66258 -34.12784 -33.56745 -31.96682 -30.55610 -28.02714 -27.41323 -26.43314 -23.95797 -23.34562 -23.16166 -21.53707 -20.85993 -19.73500 -19.51632 -18.81187 -18.14007 -17.57654 -17.15117 -17.01603 -16.59556 -16.53301 -16.36049 -15.95471 -15.54233 -15.45381 -15.30294 -14.87854 -14.71508 -14.33444 -13.98377 -13.87166 -13.72340 -13.55148 -13.48638 -13.45556 -13.36979 -13.16587 -13.10337 -12.90709 -12.78218 -12.41747 -12.24748 -12.20901 -11.98276 -11.89733 -11.74812 -11.53498 -11.28451 -10.87893 -10.78271 -9.84198 -9.81431 -8.39793 -6.46413 -1.16054 0.26483 0.45684 0.70487 1.21713 1.30565 1.31646 1.41589 2.26779 2.38556 2.43686 2.71357 2.92686 2.93940 3.03905 3.31624 3.62691 3.76220 3.85724 3.88580 4.03917 4.10486 4.24538 4.29121 4.40873 4.44723 4.53153 4.58780 4.67719 4.70446 4.80470 4.93884 4.95994 4.97613 5.07339 5.11792 5.35943 5.40725 5.49615 5.50712 5.58315 5.77577 6.04127 6.11668 6.19509 6.58533 7.17826 8.75712 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.003738 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.007182 B = 7489.189475 C = 8619.684679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.351 6.351 3 C 0.152 3.848 4 C -0.146 4.146 5 C 0.513 3.487 6 O -0.504 6.504 7 N -1.035 6.035 8 S 2.594 3.406 9 O -0.960 6.960 10 O -0.968 6.968 11 C -0.578 4.578 12 C -0.014 4.014 13 C -0.529 4.529 14 H 0.048 0.952 15 C 0.016 3.984 16 N -0.937 5.937 17 Si 0.924 3.076 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.246 1.246 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.098 4.098 27 H 0.124 0.876 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.450 0.550 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.271 0.729 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.369 -12.954 -17.214 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.269 6.269 3 C 0.107 3.893 4 C -0.203 4.203 5 C 0.298 3.702 6 O -0.376 6.376 7 N -0.802 5.802 8 S 2.692 3.308 9 O -0.951 6.951 10 O -0.958 6.958 11 C -0.711 4.711 12 C -0.053 4.053 13 C -0.568 4.568 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.577 5.577 17 Si 0.746 3.254 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.169 1.169 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.156 4.156 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.116 4.116 27 H 0.142 0.858 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.760 -12.082 -16.403 26.381 hybrid contribution -1.255 0.445 0.610 1.464 sum 15.505 -11.637 -15.794 25.005 Atomic orbital electron populations 1.23412 0.80021 1.05614 1.01043 1.88064 1.20946 1.23617 1.94288 1.20611 0.98196 0.83281 0.87223 1.22041 0.86887 1.04834 1.06544 1.21940 0.74281 0.88025 0.85907 1.90935 1.46957 1.15111 1.84572 1.54954 1.74821 1.24559 1.25882 1.05607 0.77915 0.73988 0.73242 1.93587 1.87937 1.58694 1.54854 1.93569 1.60742 1.56626 1.84870 1.30183 1.19199 1.12140 1.09590 1.19379 0.97076 0.95829 0.92999 1.21077 0.99699 1.33923 1.02064 0.93329 1.25849 0.95056 0.94793 1.02564 1.70000 1.13029 1.37199 1.37465 0.86041 0.79372 0.80368 0.79586 1.18835 1.19520 1.16928 1.19869 0.95499 1.01282 0.95929 1.21166 0.96047 0.97683 0.98328 1.21358 1.01050 0.99260 0.93889 1.21563 0.94211 0.98677 0.98601 1.21544 0.96560 0.97342 0.98757 1.21422 1.00098 0.98001 0.92050 0.85765 0.94113 0.92504 0.89488 0.86741 0.89663 0.70881 0.84958 0.83097 0.93980 0.95288 0.91995 0.87745 0.85380 0.83664 0.82703 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.49 113.37 1.08 0.99 16 2 O -0.35 -6.15 9.66 -148.98 -1.44 -7.58 16 3 C 0.15 3.04 1.01 -12.28 -0.01 3.03 16 4 C -0.15 -2.04 7.74 71.98 0.56 -1.48 16 5 C 0.51 13.76 4.58 87.66 0.40 14.16 16 6 O -0.50 -17.48 13.33 13.42 0.18 -17.30 16 7 N -1.03 -25.79 4.68 -173.52 -0.81 -26.61 16 8 S 2.59 88.92 5.11 -56.49 -0.29 88.63 16 9 O -0.96 -34.73 18.08 -127.65 -2.31 -37.04 16 10 O -0.97 -40.07 17.03 -120.69 -2.06 -42.12 16 11 C -0.58 -22.02 5.83 71.98 0.42 -21.60 16 12 C -0.01 -0.65 4.05 29.85 0.12 -0.53 16 13 C -0.53 -30.30 9.66 25.60 0.25 -30.05 16 14 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 15 C 0.02 0.95 5.47 84.65 0.46 1.42 16 16 N -0.94 -57.89 13.96 21.45 0.30 -57.60 16 17 Si 0.92 44.00 27.47 68.60 1.88 45.88 16 18 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C -0.12 -2.66 4.34 -19.87 -0.09 -2.74 16 22 C -0.11 -2.78 6.28 22.27 0.14 -2.64 16 23 C -0.14 -2.98 10.05 22.27 0.22 -2.76 16 24 C -0.11 -1.91 10.05 22.27 0.22 -1.68 16 25 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 26 C -0.10 -1.59 9.12 22.27 0.20 -1.38 16 27 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 0.72 6.59 -2.39 -0.02 0.70 16 29 H 0.06 1.01 5.54 -2.39 -0.01 0.99 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.11 0.97 6.74 -2.39 -0.02 0.96 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.45 7.90 8.18 -96.75 -0.79 7.11 16 34 H 0.13 5.13 7.20 -2.39 -0.02 5.11 16 35 H 0.15 4.88 8.14 -2.39 -0.02 4.86 16 36 H 0.04 1.94 7.20 -2.38 -0.02 1.92 16 37 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 39 H 0.10 2.75 6.43 -2.91 -0.02 2.74 16 40 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.15 1.71 8.06 -2.92 -0.02 1.69 16 42 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.16 1.57 5.97 -2.91 -0.02 1.55 16 Total: -1.00 -79.71 362.22 -0.14 -79.85 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.20 Total: 20.76 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 4.20 Total: -46.87 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -0.51 Total: -84.20 kcal Atomic # 8 Polarization: -98.43 SS G_CDS: -5.62 Total: -104.05 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 88.92 SS G_CDS: -0.29 Total: 88.63 kcal Total: -79.71 -0.14 -79.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.589 kcal (2) G-P(sol) polarization free energy of solvation -79.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds