Wall clock time and date at job start Sat Apr 11 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47259 * 2 1 4 4 C 1.53002 * 109.46813 * 120.00361 * 2 1 3 5 5 N 1.46499 * 109.47209 * 176.51811 * 4 2 1 6 6 C 1.46499 * 119.99643 * 294.11744 * 5 4 2 7 7 C 1.50701 * 109.47144 * 274.99551 * 6 5 4 8 8 H 1.08001 * 120.00053 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00160 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99953 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99997 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46773 * 60.00545 * 11 9 7 13 13 H 1.48504 * 109.47095 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47084 * 300.00449 * 11 9 7 15 15 S 1.65595 * 120.00189 * 114.11096 * 5 4 2 16 16 O 1.42106 * 106.40208 * 150.48164 * 15 5 4 17 17 O 1.42095 * 106.40373 * 17.56797 * 15 5 4 18 18 C 1.76196 * 107.22099 * 264.02187 * 15 5 4 19 19 C 1.38254 * 119.93137 * 276.66424 * 18 15 5 20 20 C 1.38234 * 120.14318 * 179.75210 * 19 18 15 21 21 C 1.38549 * 120.03215 * 0.42710 * 20 19 18 22 22 C 1.39274 * 119.82151 * 359.57289 * 21 20 19 23 23 C 1.38239 * 119.92611 * 96.64487 * 18 15 5 24 24 O 1.36504 * 108.64001 * 180.24943 * 22 21 20 25 25 C 1.43994 * 105.48204 * 342.71958 * 24 22 21 26 26 O 1.36500 * 131.53893 * 179.88491 * 21 20 19 27 27 H 1.09000 * 109.46718 * 300.00118 * 1 2 3 28 28 H 1.09002 * 109.46736 * 59.99686 * 1 2 3 29 29 H 1.08995 * 109.47620 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46718 * 239.99882 * 2 1 3 31 31 H 1.09004 * 109.47222 * 67.89412 * 3 2 1 32 32 H 1.09003 * 109.46872 * 187.88697 * 3 2 1 33 33 H 1.08994 * 109.47262 * 307.88881 * 3 2 1 34 34 H 1.08997 * 109.47338 * 56.51491 * 4 2 1 35 35 H 1.09004 * 109.46880 * 296.51424 * 4 2 1 36 36 H 1.09005 * 109.47595 * 34.99680 * 6 5 4 37 37 H 1.09001 * 109.47380 * 154.99978 * 6 5 4 38 38 H 0.96999 * 120.00125 * 179.97438 * 10 9 7 39 39 H 1.07999 * 119.92598 * 0.02562 * 19 18 15 40 40 H 1.07994 * 119.98814 * 180.33031 * 20 19 18 41 41 H 1.07998 * 119.98423 * 0.02562 * 23 18 15 42 42 H 1.08999 * 110.57187 * 268.55027 * 25 24 22 43 43 H 1.09004 * 110.56577 * 145.67575 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5026 -0.7945 1.2081 6 6 4.1672 -1.5936 0.1757 7 6 4.2524 -3.0285 0.6285 8 1 3.8512 -3.3164 1.5890 9 6 4.8416 -3.9739 -0.1839 10 7 5.3298 -3.6234 -1.3538 11 14 4.9479 -5.7524 0.3776 12 1 3.5796 -6.2809 0.6091 13 1 5.6215 -6.5625 -0.6689 14 1 5.7275 -5.8273 1.6393 15 16 4.4045 0.0263 2.3284 16 8 5.6022 -0.7184 2.5029 17 8 3.5241 0.3438 3.3976 18 6 4.8739 1.5596 1.5982 19 6 5.9793 1.6194 0.7700 20 6 6.3485 2.8190 0.1907 21 6 5.6160 3.9669 0.4462 22 6 4.5024 3.9066 1.2806 23 6 4.1359 2.7000 1.8544 24 8 3.9548 5.1539 1.3683 25 6 4.9788 6.0563 0.9094 26 8 5.7661 5.2521 0.0113 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.7966 1.9139 0.9521 32 1 3.1209 1.4456 -0.1410 33 1 1.5662 1.9953 -0.8110 34 1 1.6265 -1.7294 1.2810 35 1 1.7285 -0.1727 2.1381 36 1 3.5956 -1.5383 -0.7508 37 1 5.1718 -1.2058 0.0066 38 1 5.7446 -4.2885 -1.9252 39 1 6.5530 0.7262 0.5717 40 1 7.2093 2.8619 -0.4600 41 1 3.2729 2.6504 2.5018 42 1 5.5862 6.4033 1.7453 43 1 4.5363 6.9001 0.3798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777992813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:29 Heat of formation + Delta-G solvation = -129.943607 kcal Electronic energy + Delta-G solvation = -29171.745277 eV Core-core repulsion = 25116.516261 eV Total energy + Delta-G solvation = -4055.229016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.33581 -39.14230 -38.58123 -38.22218 -37.46069 -36.87019 -35.37567 -33.90595 -32.05314 -31.31748 -29.28188 -27.92942 -26.95244 -26.50824 -24.55425 -24.36013 -24.16938 -20.99271 -20.32638 -19.32530 -19.13747 -18.51729 -18.48044 -18.32360 -17.82019 -17.08271 -16.61365 -16.34957 -15.78278 -15.65433 -15.45441 -15.29890 -15.06880 -15.01705 -14.37107 -14.34079 -14.12666 -14.01709 -13.80409 -13.63393 -13.28601 -13.14980 -13.05904 -12.90697 -12.86889 -12.67416 -12.50639 -12.39763 -12.33042 -12.17493 -11.99411 -11.90901 -11.70421 -11.55055 -11.32418 -10.51729 -10.20186 -9.71269 -9.42806 -8.13990 -6.23834 -0.69067 -0.40144 -0.01906 1.43696 1.46672 1.52738 1.54016 1.97933 2.28310 2.32719 2.46374 2.81373 3.17555 3.19241 3.34240 3.71039 3.85455 3.91332 3.93820 4.01994 4.10978 4.14866 4.18476 4.35478 4.42611 4.59631 4.72860 4.75497 4.81294 4.84687 4.88168 4.91584 5.01779 5.08608 5.12250 5.15734 5.27225 5.34514 5.42594 5.49848 5.64083 5.78214 5.89694 5.97367 6.17965 6.83296 7.44029 8.93136 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.004144 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.488364 B = 6754.622086 C = 7394.772524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.152 4.152 4 C 0.119 3.881 5 N -0.980 5.980 6 C 0.272 3.728 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.017 3.983 10 N -0.923 5.923 11 Si 0.949 3.051 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.278 1.278 15 S 2.694 3.306 16 O -0.980 6.980 17 O -0.982 6.982 18 C -0.669 4.669 19 C -0.010 4.010 20 C -0.119 4.119 21 C 0.085 3.915 22 C 0.005 3.995 23 C -0.003 4.003 24 O -0.314 6.314 25 C 0.201 3.799 26 O -0.311 6.311 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.022 0.978 38 H 0.266 0.734 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.111 0.889 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.014 18.938 1.834 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.209 4.209 4 C -0.006 4.006 5 N -0.819 5.819 6 C 0.149 3.851 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.563 5.563 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.203 1.203 15 S 2.786 3.214 16 O -0.971 6.971 17 O -0.973 6.973 18 C -0.757 4.757 19 C -0.029 4.029 20 C -0.138 4.138 21 C 0.039 3.961 22 C -0.040 4.040 23 C -0.023 4.023 24 O -0.231 6.231 25 C 0.091 3.909 26 O -0.227 6.227 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.128 0.872 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.808 18.779 2.398 19.311 hybrid contribution 0.445 -0.480 -0.460 0.800 sum -3.363 18.299 1.939 18.706 Atomic orbital electron populations 1.21733 0.92936 1.02254 1.02659 1.21440 0.97121 0.96276 0.98267 1.22034 1.00822 0.95750 1.02286 1.21565 0.78097 1.01789 0.99134 1.57229 1.15420 1.60409 1.48831 1.18660 0.91502 0.88619 0.86312 1.21784 1.38244 0.94754 1.03485 0.92906 1.25619 0.94886 1.02789 0.94958 1.69987 1.39883 1.35721 1.10675 0.85744 0.78712 0.80113 0.77967 1.19118 1.20425 1.20330 1.01626 0.72867 0.73418 0.73498 1.93566 1.48275 1.70018 1.85208 1.93468 1.66084 1.85586 1.52122 1.30756 1.07929 1.19544 1.17449 1.20894 0.92712 0.98564 0.90740 1.20382 1.01627 0.88306 1.03483 1.20181 0.95003 0.87048 0.93836 1.19715 0.94859 0.88014 1.01436 1.19687 0.98951 0.87470 0.96222 1.87376 1.38523 1.13443 1.83754 1.26324 0.82333 0.90380 0.91906 1.87385 1.68728 1.14287 1.52305 0.91501 0.91587 0.92487 0.91985 0.92098 0.93765 0.91566 0.91061 0.88613 0.94857 0.96033 0.92512 0.83133 0.81311 0.82502 0.87182 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.19 71.98 0.66 -2.47 16 2 C -0.11 -3.22 2.93 -10.79 -0.03 -3.25 16 3 C -0.15 -4.06 7.94 71.98 0.57 -3.49 16 4 C 0.12 4.04 5.27 86.38 0.45 4.50 16 5 N -0.98 -39.51 2.40 -519.84 -1.25 -40.76 16 6 C 0.27 13.20 4.99 85.63 0.43 13.63 16 7 C -0.54 -29.86 9.38 25.60 0.24 -29.62 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 9 C 0.02 0.94 5.46 84.65 0.46 1.40 16 10 N -0.92 -52.69 13.29 21.45 0.28 -52.40 16 11 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 S 2.69 105.91 5.61 -56.49 -0.32 105.59 16 16 O -0.98 -46.24 16.65 -128.00 -2.13 -48.38 16 17 O -0.98 -38.63 15.51 -128.00 -1.98 -40.62 16 18 C -0.67 -21.50 4.47 22.27 0.10 -21.40 16 19 C -0.01 -0.29 9.51 22.27 0.21 -0.08 16 20 C -0.12 -2.98 10.06 22.34 0.22 -2.76 16 21 C 0.09 2.11 7.15 22.59 0.16 2.28 16 22 C 0.01 0.13 7.15 22.59 0.16 0.29 16 23 C 0.00 -0.10 7.27 22.34 0.16 0.06 16 24 O -0.31 -6.85 11.40 -76.10 -0.87 -7.72 16 25 C 0.20 2.79 8.89 113.37 1.01 3.80 16 26 O -0.31 -6.47 11.40 -76.06 -0.87 -7.33 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 2.07 6.79 -2.39 -0.02 2.05 16 31 H 0.06 1.49 7.15 -2.39 -0.02 1.47 16 32 H 0.04 1.30 5.78 -2.39 -0.01 1.29 16 33 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.10 2.95 6.70 -2.39 -0.02 2.93 16 36 H 0.03 1.65 6.70 -2.38 -0.02 1.64 16 37 H 0.02 1.10 7.77 -2.39 -0.02 1.08 16 38 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.15 4.71 7.77 -2.91 -0.02 4.69 16 40 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.16 4.12 7.21 -2.91 -0.02 4.10 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.17 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -69.55 363.81 0.74 -68.81 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.03 Total: 13.91 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.81 Total: -37.10 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -0.96 Total: -93.16 kcal Atomic # 8 Polarization: -98.19 SS G_CDS: -5.85 Total: -104.04 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 105.91 SS G_CDS: -0.32 Total: 105.59 kcal Total: -69.55 0.74 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777992813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.131 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds