Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 H 1.09008 * 109.47041 * 305.58803 * 3 2 1 5 5 C 1.50698 * 109.47389 * 185.59017 * 3 2 1 6 6 H 1.07998 * 119.99399 * 274.99278 * 5 3 2 7 7 C 1.37876 * 120.00250 * 94.99409 * 5 3 2 8 8 N 1.31513 * 119.99732 * 184.84438 * 7 5 3 9 9 Si 1.86793 * 119.99982 * 4.84024 * 7 5 3 10 10 H 1.48508 * 109.46948 * 84.86794 * 9 7 5 11 11 H 1.48497 * 109.47212 * 204.86689 * 9 7 5 12 12 H 1.48499 * 109.47334 * 324.86685 * 9 7 5 13 13 O 1.45195 * 109.46800 * 65.58418 * 3 2 1 14 14 C 1.34710 * 117.00226 * 269.99818 * 13 3 2 15 15 O 1.21463 * 120.00087 * 0.02562 * 14 13 3 16 16 C 1.47734 * 119.99779 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.14708 * 180.02562 * 16 14 13 18 18 C 1.37942 * 119.84704 * 179.75010 * 17 16 14 19 19 C 1.38371 * 120.15155 * 0.25444 * 18 17 16 20 20 S 1.76198 * 119.84720 * 180.02562 * 19 18 17 21 21 O 1.42102 * 106.39757 * 203.53319 * 20 19 18 22 22 O 1.42091 * 106.40343 * 336.46119 * 20 19 18 23 23 N 1.65603 * 107.21591 * 90.00072 * 20 19 18 24 24 C 1.46506 * 120.00199 * 89.99924 * 23 20 19 25 25 C 1.46496 * 119.99880 * 269.99284 * 23 20 19 26 26 C 1.38362 * 120.29963 * 359.97438 * 19 18 17 27 27 C 1.37945 * 120.15505 * 0.02562 * 26 19 18 28 28 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47550 * 299.99664 * 1 2 3 30 30 H 1.09001 * 109.47289 * 60.00102 * 1 2 3 31 31 H 1.09003 * 109.47172 * 240.00571 * 2 1 3 32 32 H 1.08992 * 109.47176 * 120.00148 * 2 1 3 33 33 H 0.97001 * 119.99713 * 180.02562 * 8 7 5 34 34 H 1.08008 * 120.07763 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92299 * 180.22868 * 18 17 16 36 36 H 1.08995 * 109.46850 * 89.99534 * 24 23 20 37 37 H 1.09001 * 109.47120 * 209.99975 * 24 23 20 38 38 H 1.08995 * 109.46708 * 329.99559 * 24 23 20 39 39 H 1.09006 * 109.46945 * 90.00362 * 25 23 20 40 40 H 1.09003 * 109.47374 * 210.00022 * 25 23 20 41 41 H 1.09001 * 109.47285 * 330.00775 * 25 23 20 42 42 H 1.08007 * 119.92244 * 180.02562 * 26 19 18 43 43 H 1.07995 * 120.08075 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5884 -1.3822 8 7 5.4230 1.4952 -1.5160 9 14 3.0468 1.9152 -2.8771 10 1 2.7808 3.3722 -2.9865 11 1 3.7471 1.4467 -4.0999 12 1 1.7608 1.1867 -2.7334 13 8 1.6678 2.0874 1.2465 14 6 0.4806 2.7233 1.2755 15 8 -0.2246 2.7384 0.2866 16 6 0.0359 3.4015 2.5103 17 6 -1.1943 4.0612 2.5439 18 6 -1.6058 4.6880 3.7018 19 6 -0.8001 4.6685 4.8266 20 16 -1.3339 5.4712 6.3015 21 8 -0.1595 5.7674 7.0446 22 8 -2.2717 6.4613 5.9026 23 7 -2.1792 4.3565 7.1877 24 6 -1.4810 3.5112 8.1595 25 6 -3.6253 4.2158 7.0001 26 6 0.4221 4.0207 4.7987 27 6 0.8459 3.3899 3.6475 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8293 1.5966 -2.3909 34 1 -1.8243 4.0769 1.6667 35 1 -2.5587 5.1954 3.7303 36 1 -1.4711 4.0061 9.1306 37 1 -1.9956 2.5541 8.2445 38 1 -0.4567 3.3446 7.8262 39 1 -3.8207 3.4764 6.2234 40 1 -4.0830 3.8907 7.9345 41 1 -4.0482 5.1754 6.7028 42 1 1.0459 4.0090 5.6804 43 1 1.8000 2.8843 3.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -129.957115 kcal Electronic energy + Delta-G solvation = -27623.389026 eV Core-core repulsion = 23568.159424 eV Total energy + Delta-G solvation = -4055.229602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.26961 -38.79501 -37.60523 -36.56262 -36.14148 -36.05528 -33.55892 -32.18628 -31.62217 -31.31135 -28.53070 -27.97125 -25.21136 -24.84396 -23.14901 -22.86830 -21.25334 -19.83355 -19.41314 -18.43384 -17.99395 -17.58914 -16.82769 -16.47783 -16.35021 -15.71626 -15.21772 -15.11473 -14.86609 -14.55670 -14.41557 -13.78881 -13.64369 -13.62539 -13.35823 -13.10481 -13.01786 -12.83930 -12.74245 -12.44122 -12.35910 -12.19693 -12.04984 -11.92539 -11.82742 -11.51325 -11.44407 -11.21616 -11.06504 -10.88988 -10.33838 -10.09179 -9.91265 -9.66694 -9.49216 -9.48180 -9.29632 -9.18276 -8.78746 -6.35995 -4.40789 -0.06766 0.25980 1.07586 2.40958 2.74590 3.12214 3.23444 3.26924 3.28232 3.37790 3.61678 3.93687 4.18759 4.34455 4.51072 4.62260 4.84187 4.90509 4.94535 5.06642 5.08072 5.17032 5.24466 5.35812 5.36094 5.40069 5.49576 5.64847 5.79049 5.80508 5.82174 5.89389 5.97455 6.04534 6.15853 6.31158 6.52009 6.52929 6.68201 6.70911 7.05505 7.21139 7.40029 8.09582 8.44691 8.73661 9.22465 10.75046 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.002626 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.215438 B =10661.341693 C =10871.007952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.188 3.812 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.086 0.914 7 C 0.084 3.916 8 N -0.878 5.878 9 Si 0.868 3.132 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.259 1.259 13 O -0.338 6.338 14 C 0.488 3.512 15 O -0.508 6.508 16 C -0.056 4.056 17 C -0.084 4.084 18 C -0.035 4.035 19 C -0.661 4.661 20 S 2.695 3.305 21 O -0.950 6.950 22 O -0.953 6.953 23 N -1.006 6.006 24 C 0.091 3.909 25 C 0.081 3.919 26 C -0.034 4.034 27 C -0.083 4.083 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.147 0.853 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.217 3.031 17.602 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.135 3.865 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.104 0.896 7 C -0.121 4.121 8 N -0.514 5.514 9 Si 0.693 3.307 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.183 1.183 13 O -0.254 6.254 14 C 0.332 3.668 15 O -0.399 6.399 16 C -0.057 4.057 17 C -0.103 4.103 18 C -0.054 4.054 19 C -0.747 4.747 20 S 2.785 3.215 21 O -0.940 6.940 22 O -0.943 6.943 23 N -0.845 5.845 24 C -0.054 4.054 25 C -0.064 4.064 26 C -0.054 4.054 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.164 0.836 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.060 3.830 17.394 24.663 hybrid contribution -0.334 -0.521 -1.591 1.707 sum -17.395 3.309 15.803 23.733 Atomic orbital electron populations 1.21937 0.97508 0.99922 1.01485 1.22104 0.93565 0.98735 1.02528 1.21132 0.96264 0.88877 0.80193 0.93284 1.20768 0.87674 1.51572 0.95794 0.89567 1.24905 0.94985 0.93583 0.98639 1.69846 1.09510 1.47259 1.24814 0.86981 0.81257 0.79947 0.82477 1.19521 1.20614 1.18328 1.86727 1.32972 1.61951 1.43747 1.21078 0.81401 0.77139 0.87195 1.90779 1.55044 1.58433 1.35659 1.19873 0.95270 0.97555 0.93013 1.21434 0.95029 0.94998 0.98803 1.20817 0.98575 0.94891 0.91090 1.31151 1.05404 1.17940 1.20248 1.02006 0.73165 0.73135 0.73196 1.93597 1.48219 1.82249 1.69955 1.93573 1.62724 1.54800 1.83243 1.57318 1.17169 1.57096 1.52919 1.21550 0.97001 0.94873 0.91972 1.21660 0.78633 1.03277 1.02854 1.20927 0.93170 0.92281 0.98991 1.21765 1.00121 0.96931 0.91349 0.93931 0.93987 0.92707 0.90855 0.91834 0.91844 0.83531 0.83633 0.91988 0.90658 0.90706 0.92400 0.90341 0.89689 0.83570 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.57 37.16 0.32 -2.51 16 2 C -0.13 -2.78 5.63 -26.73 -0.15 -2.93 16 3 C 0.19 4.52 1.91 -27.88 -0.05 4.47 16 4 H 0.05 1.24 4.31 -51.92 -0.22 1.02 16 5 C -0.52 -14.32 9.25 -34.44 -0.32 -14.64 16 6 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 7 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 8 N -0.88 -25.61 13.96 55.43 0.77 -24.83 16 9 Si 0.87 20.97 26.99 -169.99 -4.59 16.38 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -6.06 6.82 56.52 0.39 -5.68 16 13 O -0.34 -7.43 9.06 -40.52 -0.37 -7.80 16 14 C 0.49 9.58 6.38 34.61 0.22 9.80 16 15 O -0.51 -10.78 13.53 -19.24 -0.26 -11.04 16 16 C -0.06 -0.87 5.87 -104.98 -0.62 -1.48 16 17 C -0.08 -1.11 9.60 -39.17 -0.38 -1.48 16 18 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 19 C -0.66 -7.31 5.98 -39.49 -0.24 -7.54 16 20 S 2.70 27.55 5.65 -107.50 -0.61 26.95 16 21 O -0.95 -11.88 16.34 -57.17 -0.93 -12.82 16 22 O -0.95 -11.64 15.87 -57.17 -0.91 -12.54 16 23 N -1.01 -7.31 3.58 -129.20 -0.46 -7.77 16 24 C 0.09 0.51 10.29 59.85 0.62 1.12 16 25 C 0.08 0.43 10.66 59.84 0.64 1.07 16 26 C -0.03 -0.40 9.50 -39.64 -0.38 -0.77 16 27 C -0.08 -1.13 9.62 -39.17 -0.38 -1.51 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.77 6.05 -51.93 -0.31 0.46 16 30 H 0.05 1.07 7.82 -51.93 -0.41 0.67 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.15 1.82 7.65 -52.48 -0.40 1.42 16 35 H 0.15 1.26 7.60 -52.49 -0.40 0.86 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 38 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 41 H 0.08 0.48 7.02 -51.93 -0.36 0.12 16 42 H 0.15 1.34 7.60 -52.48 -0.40 0.94 16 43 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -34.09 370.91 -8.79 -42.87 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.84 Total: -0.05 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.19 Total: -14.93 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.31 Total: -32.61 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -2.47 Total: -44.20 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.59 Total: 16.38 kcal Atomic # 16 Polarization: 27.55 SS G_CDS: -0.61 Total: 26.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.09 -8.79 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.084 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds