Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47091 * 2 1 4 4 H 1.09008 * 109.47041 * 305.58803 * 3 2 1 5 5 C 1.50698 * 109.47389 * 185.59017 * 3 2 1 6 6 H 1.07998 * 119.99399 * 274.99278 * 5 3 2 7 7 C 1.37876 * 120.00250 * 94.99409 * 5 3 2 8 8 N 1.31513 * 119.99732 * 184.84438 * 7 5 3 9 9 Si 1.86793 * 119.99982 * 4.84024 * 7 5 3 10 10 H 1.48508 * 109.46948 * 84.86794 * 9 7 5 11 11 H 1.48497 * 109.47212 * 204.86689 * 9 7 5 12 12 H 1.48499 * 109.47334 * 324.86685 * 9 7 5 13 13 O 1.45195 * 109.46800 * 65.58418 * 3 2 1 14 14 C 1.34710 * 117.00226 * 269.99818 * 13 3 2 15 15 O 1.21463 * 120.00087 * 0.02562 * 14 13 3 16 16 C 1.47734 * 119.99779 * 179.97438 * 14 13 3 17 17 C 1.39630 * 120.14708 * 180.02562 * 16 14 13 18 18 C 1.37942 * 119.84704 * 179.75010 * 17 16 14 19 19 C 1.38371 * 120.15155 * 0.25444 * 18 17 16 20 20 S 1.76198 * 119.84720 * 180.02562 * 19 18 17 21 21 O 1.42102 * 106.39757 * 203.53319 * 20 19 18 22 22 O 1.42091 * 106.40343 * 336.46119 * 20 19 18 23 23 N 1.65603 * 107.21591 * 90.00072 * 20 19 18 24 24 C 1.46506 * 120.00199 * 89.99924 * 23 20 19 25 25 C 1.46496 * 119.99880 * 269.99284 * 23 20 19 26 26 C 1.38362 * 120.29963 * 359.97438 * 19 18 17 27 27 C 1.37945 * 120.15505 * 0.02562 * 26 19 18 28 28 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47550 * 299.99664 * 1 2 3 30 30 H 1.09001 * 109.47289 * 60.00102 * 1 2 3 31 31 H 1.09003 * 109.47172 * 240.00571 * 2 1 3 32 32 H 1.08992 * 109.47176 * 120.00148 * 2 1 3 33 33 H 0.97001 * 119.99713 * 180.02562 * 8 7 5 34 34 H 1.08008 * 120.07763 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92299 * 180.22868 * 18 17 16 36 36 H 1.08995 * 109.46850 * 89.99534 * 24 23 20 37 37 H 1.09001 * 109.47120 * 209.99975 * 24 23 20 38 38 H 1.08995 * 109.46708 * 329.99559 * 24 23 20 39 39 H 1.09006 * 109.46945 * 90.00362 * 25 23 20 40 40 H 1.09003 * 109.47374 * 210.00022 * 25 23 20 41 41 H 1.09001 * 109.47285 * 330.00775 * 25 23 20 42 42 H 1.08007 * 119.92244 * 180.02562 * 26 19 18 43 43 H 1.07995 * 120.08075 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8358 5 6 3.5406 1.4449 -0.1384 6 1 4.1637 1.3341 0.7367 7 6 4.1180 1.5884 -1.3822 8 7 5.4230 1.4952 -1.5160 9 14 3.0468 1.9152 -2.8771 10 1 2.7808 3.3722 -2.9865 11 1 3.7471 1.4467 -4.0999 12 1 1.7608 1.1867 -2.7334 13 8 1.6678 2.0874 1.2465 14 6 0.4806 2.7233 1.2755 15 8 -0.2246 2.7384 0.2866 16 6 0.0359 3.4015 2.5103 17 6 -1.1943 4.0612 2.5439 18 6 -1.6058 4.6880 3.7018 19 6 -0.8001 4.6685 4.8266 20 16 -1.3339 5.4712 6.3015 21 8 -0.1595 5.7674 7.0446 22 8 -2.2717 6.4613 5.9026 23 7 -2.1792 4.3565 7.1877 24 6 -1.4810 3.5112 8.1595 25 6 -3.6253 4.2158 7.0001 26 6 0.4221 4.0207 4.7987 27 6 0.8459 3.3899 3.6475 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 5.8293 1.5966 -2.3909 34 1 -1.8243 4.0769 1.6667 35 1 -2.5587 5.1954 3.7303 36 1 -1.4711 4.0061 9.1306 37 1 -1.9956 2.5541 8.2445 38 1 -0.4567 3.3446 7.8262 39 1 -3.8207 3.4764 6.2234 40 1 -4.0830 3.8907 7.9345 41 1 -4.0482 5.1754 6.7028 42 1 1.0459 4.0090 5.6804 43 1 1.8000 2.8843 3.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -152.544305 kcal Electronic energy + Delta-G solvation = -27624.368480 eV Core-core repulsion = 23568.159424 eV Total energy + Delta-G solvation = -4056.209056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73753 -40.00136 -38.49028 -37.74038 -37.14010 -36.96265 -35.43080 -34.04291 -32.78283 -32.30350 -29.85014 -28.93271 -26.33369 -25.54894 -24.81074 -23.98839 -22.67751 -21.52154 -20.22866 -19.77478 -19.09151 -18.63418 -18.45190 -17.92098 -17.36612 -17.18208 -16.48416 -16.11738 -15.89463 -15.51310 -15.32537 -15.12294 -14.88086 -14.73772 -14.67374 -14.29272 -14.11676 -13.98160 -13.83297 -13.56461 -13.52677 -13.33281 -13.23597 -13.19354 -12.97302 -12.63818 -12.61839 -12.53743 -12.44770 -12.19690 -12.01171 -11.91394 -11.59514 -11.36936 -11.10492 -10.85482 -10.69521 -10.26863 -10.04743 -8.50564 -6.60316 -1.00309 -0.68866 0.09687 1.20870 1.23529 1.26554 1.36239 1.72999 1.89785 2.16329 2.39225 2.63779 2.85851 3.11413 3.51178 3.68800 3.71874 3.87450 4.07745 4.11513 4.14820 4.21419 4.31524 4.40776 4.52832 4.53414 4.60208 4.74100 4.79487 4.80778 4.83444 4.96822 5.00155 5.03131 5.03228 5.05149 5.08444 5.10545 5.30682 5.41870 5.52972 5.54567 5.54967 6.09052 6.48588 6.75296 7.07164 8.64626 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021832 B = 0.002626 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.215438 B =10661.341693 C =10871.007952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.190 3.810 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.049 0.951 7 C 0.037 3.963 8 N -0.921 5.921 9 Si 0.924 3.076 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.247 1.247 13 O -0.350 6.350 14 C 0.487 3.513 15 O -0.528 6.528 16 C -0.082 4.082 17 C -0.083 4.083 18 C -0.028 4.028 19 C -0.654 4.654 20 S 2.713 3.287 21 O -0.973 6.973 22 O -0.972 6.972 23 N -0.999 5.999 24 C 0.079 3.921 25 C 0.070 3.930 26 C -0.032 4.032 27 C -0.089 4.089 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.276 0.724 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.170 0.830 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 3.020 18.797 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.137 3.863 4 H 0.056 0.944 5 C -0.569 4.569 6 H 0.068 0.932 7 C -0.164 4.164 8 N -0.559 5.559 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.191 1.191 12 H -0.170 1.170 13 O -0.266 6.266 14 C 0.333 3.667 15 O -0.420 6.420 16 C -0.083 4.083 17 C -0.101 4.101 18 C -0.047 4.047 19 C -0.739 4.739 20 S 2.801 3.199 21 O -0.964 6.964 22 O -0.962 6.962 23 N -0.841 5.841 24 C -0.066 4.066 25 C -0.074 4.074 26 C -0.050 4.050 27 C -0.108 4.108 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.187 0.813 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.865 3.812 18.592 27.473 hybrid contribution 0.479 -0.478 -1.734 1.861 sum -19.386 3.334 16.858 25.906 Atomic orbital electron populations 1.21827 0.95177 1.01863 1.00943 1.22022 0.95577 0.96555 1.02633 1.20933 0.94064 0.90610 0.80691 0.94391 1.20919 0.89539 1.51660 0.94800 0.93223 1.25632 0.96079 0.93301 1.01430 1.69952 1.11202 1.48838 1.25878 0.86080 0.80155 0.79725 0.79345 1.19648 1.19147 1.17020 1.86665 1.34803 1.62710 1.42428 1.21695 0.80156 0.76401 0.88464 1.90751 1.55245 1.59202 1.36772 1.19723 0.97066 0.99720 0.91838 1.21552 0.94077 0.94643 0.99867 1.21131 0.99538 0.93981 0.90063 1.31485 1.04976 1.16579 1.20884 1.01429 0.72549 0.73195 0.72696 1.93567 1.49594 1.82978 1.70211 1.93547 1.62991 1.56102 1.83572 1.57137 1.17858 1.56871 1.52191 1.21824 0.97305 0.95723 0.91723 1.21922 0.77242 1.03592 1.04629 1.21158 0.93600 0.91425 0.98867 1.21780 0.99874 0.97449 0.91667 0.90699 0.94084 0.93661 0.91158 0.91373 0.91403 0.82949 0.80796 0.91276 0.88379 0.90671 0.91176 0.88052 0.90115 0.81308 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 8.57 71.98 0.62 -4.43 16 2 C -0.13 -5.46 5.63 30.59 0.17 -5.29 16 3 C 0.19 9.30 1.91 29.85 0.06 9.36 16 4 H 0.04 1.94 4.31 -2.38 -0.01 1.93 16 5 C -0.53 -30.30 9.25 25.60 0.24 -30.07 16 6 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 7 C 0.04 2.10 5.47 84.65 0.46 2.57 16 8 N -0.92 -55.23 13.96 21.45 0.30 -54.93 16 9 Si 0.92 43.53 26.99 68.60 1.85 45.38 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.25 -11.03 6.82 99.48 0.68 -10.35 16 13 O -0.35 -15.74 9.06 -56.19 -0.51 -16.25 16 14 C 0.49 19.25 6.38 70.33 0.45 19.70 16 15 O -0.53 -22.35 13.53 19.96 0.27 -22.08 16 16 C -0.08 -2.53 5.87 -20.10 -0.12 -2.65 16 17 C -0.08 -2.06 9.60 22.54 0.22 -1.85 16 18 C -0.03 -0.56 9.50 22.23 0.21 -0.35 16 19 C -0.65 -13.02 5.98 22.33 0.13 -12.89 16 20 S 2.71 49.39 5.65 -56.49 -0.32 49.07 16 21 O -0.97 -22.59 16.34 -128.00 -2.09 -24.68 16 22 O -0.97 -21.59 15.87 -128.00 -2.03 -23.62 16 23 N -1.00 -11.63 3.58 -562.68 -2.02 -13.65 16 24 C 0.08 0.64 10.29 127.77 1.31 1.96 16 25 C 0.07 0.52 10.66 127.77 1.36 1.88 16 26 C -0.03 -0.68 9.50 22.23 0.21 -0.46 16 27 C -0.09 -2.39 9.62 22.54 0.22 -2.18 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.46 6.05 -2.39 -0.01 1.44 16 30 H 0.04 1.70 7.82 -2.39 -0.02 1.68 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.95 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.15 3.57 7.65 -2.91 -0.02 3.55 16 35 H 0.17 2.44 7.60 -2.91 -0.02 2.42 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 0.37 8.07 -2.39 -0.02 0.35 16 38 H 0.07 0.62 7.79 -2.39 -0.02 0.60 16 39 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.10 0.32 8.07 -2.39 -0.02 0.30 16 41 H 0.08 0.70 7.02 -2.39 -0.02 0.68 16 42 H 0.17 2.77 7.60 -2.91 -0.02 2.75 16 43 H 0.15 4.07 7.61 -2.91 -0.02 4.04 16 Total: -1.00 -74.96 370.91 1.99 -72.97 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.00 Total: 12.49 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 5.54 Total: -24.70 kcal Atomic # 7 Polarization: -66.86 SS G_CDS: -1.72 Total: -68.58 kcal Atomic # 8 Polarization: -82.27 SS G_CDS: -4.36 Total: -86.63 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.85 Total: 45.38 kcal Atomic # 16 Polarization: 49.39 SS G_CDS: -0.32 Total: 49.07 kcal Total: -74.96 1.99 -72.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.574 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds