Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46661 * 2 1 4 4 H 1.09000 * 109.47300 * 55.00533 * 3 2 1 5 5 C 1.50707 * 109.46848 * 174.99518 * 3 2 1 6 6 H 1.08004 * 119.99502 * 119.99788 * 5 3 2 7 7 C 1.37874 * 120.00135 * 300.00418 * 5 3 2 8 8 N 1.31507 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99783 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47295 * 60.00047 * 9 7 5 11 11 H 1.48503 * 109.46935 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47274 * 299.99899 * 9 7 5 13 13 O 1.45200 * 109.47360 * 294.99854 * 3 2 1 14 14 C 1.34710 * 117.00020 * 90.00244 * 13 3 2 15 15 O 1.21468 * 119.99450 * 0.02562 * 14 13 3 16 16 C 1.47725 * 119.99820 * 179.97438 * 14 13 3 17 17 C 1.39634 * 120.14694 * 179.97438 * 16 14 13 18 18 C 1.37936 * 119.84494 * 180.02562 * 17 16 14 19 19 C 1.38369 * 120.15524 * 0.02562 * 18 17 16 20 20 S 1.76199 * 119.85120 * 179.97438 * 19 18 17 21 21 O 1.42100 * 106.40198 * 203.54234 * 20 19 18 22 22 O 1.42096 * 106.39959 * 336.46299 * 20 19 18 23 23 N 1.65599 * 107.21658 * 90.00290 * 20 19 18 24 24 C 1.46499 * 120.00337 * 89.99803 * 23 20 19 25 25 C 1.46502 * 119.99727 * 269.99791 * 23 20 19 26 26 C 1.38374 * 120.30031 * 0.23299 * 19 18 17 27 27 C 1.37950 * 120.14726 * 359.48861 * 26 19 18 28 28 H 1.08996 * 109.47341 * 299.99921 * 1 2 3 29 29 H 1.09003 * 109.46651 * 60.00111 * 1 2 3 30 30 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47108 * 240.00535 * 2 1 3 32 32 H 1.08994 * 109.47386 * 119.99680 * 2 1 3 33 33 H 0.96999 * 120.00450 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.07266 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92606 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.46765 * 0.02562 * 24 23 20 37 37 H 1.09001 * 109.46951 * 119.99508 * 24 23 20 38 38 H 1.08994 * 109.47226 * 240.00100 * 24 23 20 39 39 H 1.09004 * 109.46955 * 90.00036 * 25 23 20 40 40 H 1.09003 * 109.47115 * 210.00083 * 25 23 20 41 41 H 1.08994 * 109.47486 * 330.00188 * 25 23 20 42 42 H 1.08000 * 119.92652 * 179.72459 * 26 19 18 43 43 H 1.08003 * 120.07432 * 180.25578 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.5003 2.2801 1.3810 11 1 6.3977 0.2169 2.6505 12 1 6.5967 0.1455 0.2344 13 8 1.6558 2.0918 -1.2407 14 6 0.4684 2.7278 -1.2560 15 8 -0.2268 2.7400 -0.2600 16 6 0.0124 3.4111 -2.4837 17 6 -1.2182 4.0709 -2.5033 18 6 -1.6381 4.7065 -3.6532 19 6 -0.8434 4.6910 -4.7858 20 16 -1.3880 5.5049 -6.2505 21 8 -0.7060 4.8842 -7.3317 22 8 -2.8044 5.5793 -6.1651 23 7 -0.8327 7.0635 -6.1805 24 6 0.4780 7.4001 -6.7415 25 6 -1.6524 8.1057 -5.5574 26 6 0.3747 4.0345 -4.7750 27 6 0.8095 3.3997 -3.6300 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0609 2.9500 34 1 -1.8396 4.0834 -1.6200 35 1 -2.5894 5.2175 -3.6696 36 1 0.9359 6.5031 -7.1585 37 1 0.3561 8.1447 -7.5282 38 1 1.1170 7.8030 -5.9558 39 1 -1.4163 8.1669 -4.4950 40 1 -1.4433 9.0645 -6.0318 41 1 -2.7072 7.8612 -5.6817 42 1 0.9881 4.0224 -5.6638 43 1 1.7623 2.8912 -3.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -130.942314 kcal Electronic energy + Delta-G solvation = -27522.840258 eV Core-core repulsion = 23467.567935 eV Total energy + Delta-G solvation = -4055.272324 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16651 -38.70370 -37.61073 -36.54320 -36.13454 -35.91428 -33.64130 -31.87820 -31.30543 -31.23754 -28.50440 -27.42705 -25.16491 -24.78986 -23.24876 -22.88321 -21.08650 -19.72809 -19.38290 -18.38607 -17.86810 -17.40620 -16.82566 -16.43899 -15.97184 -15.47411 -15.19086 -15.10550 -14.82793 -14.61152 -14.47078 -13.75694 -13.61785 -13.48258 -13.16612 -12.99967 -12.95986 -12.84408 -12.76572 -12.36430 -12.18390 -11.97223 -11.93420 -11.62385 -11.48878 -11.37319 -11.28379 -11.17357 -11.01664 -10.74067 -10.37209 -9.96248 -9.80418 -9.63007 -9.48805 -9.46680 -9.26730 -8.91501 -8.53074 -6.25655 -4.33558 -0.04548 0.29346 1.10662 2.44714 2.79877 3.21170 3.23659 3.26222 3.37227 3.42105 3.67770 3.95336 4.25887 4.38151 4.54301 4.65036 4.90605 4.99143 5.05957 5.08551 5.11138 5.18416 5.32056 5.38524 5.39884 5.43415 5.51480 5.67871 5.83403 5.93495 6.06684 6.15571 6.18743 6.23804 6.37848 6.55117 6.76977 6.86841 7.07511 7.11468 7.52000 7.64124 7.81452 8.05696 8.45222 8.76389 9.31782 10.81079 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.002568 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.322400 B =10900.941652 C =11612.011559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 O -0.347 6.347 14 C 0.489 3.511 15 O -0.502 6.502 16 C -0.053 4.053 17 C -0.084 4.084 18 C -0.034 4.034 19 C -0.662 4.662 20 S 2.695 3.305 21 O -0.952 6.952 22 O -0.953 6.953 23 N -1.005 6.005 24 C 0.084 3.916 25 C 0.081 3.919 26 C -0.034 4.034 27 C -0.085 4.085 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.268 0.732 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 13.855 -15.658 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.263 6.263 14 C 0.332 3.668 15 O -0.392 6.392 16 C -0.054 4.054 17 C -0.103 4.103 18 C -0.053 4.053 19 C -0.749 4.749 20 S 2.785 3.215 21 O -0.942 6.942 22 O -0.944 6.944 23 N -0.844 5.844 24 C -0.062 4.062 25 C -0.064 4.064 26 C -0.054 4.054 27 C -0.104 4.104 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.164 0.836 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.575 13.392 -15.806 22.421 hybrid contribution 1.297 -0.187 1.101 1.712 sum -7.278 13.204 -14.706 21.061 Atomic orbital electron populations 1.21872 0.98359 0.99211 1.00681 1.22037 0.92647 0.99196 1.03544 1.20773 0.95178 0.88808 0.78216 0.93339 1.20976 0.89442 1.39403 1.06412 0.91304 1.24882 0.99346 0.94641 0.94991 1.69869 1.35589 1.37531 1.09457 0.86319 0.83678 0.78512 0.77545 1.19972 1.20988 1.19875 1.86534 1.33114 1.62107 1.44527 1.20918 0.81466 0.77305 0.87105 1.90795 1.55393 1.58154 1.34899 1.19885 0.95210 0.97199 0.93109 1.21440 0.94842 0.95069 0.98943 1.20815 0.98092 0.95683 0.90725 1.31121 1.05987 1.17269 1.20506 1.01968 0.73488 0.72190 0.73856 1.93586 1.75538 1.74723 1.50383 1.93572 1.27873 1.85880 1.87035 1.57261 1.28836 1.25130 1.73158 1.21631 0.82759 1.02974 0.98787 1.21640 0.95433 0.91441 0.97890 1.20911 0.93127 0.92821 0.98501 1.21746 1.00285 0.97023 0.91321 0.92745 0.95079 0.94622 0.93832 0.87162 0.92216 0.83481 0.83644 0.89436 0.91454 0.91764 0.92354 0.90352 0.89694 0.83644 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.73 2.25 -27.88 -0.06 5.67 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.22 8.90 -34.44 -0.31 -14.53 16 6 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 O -0.35 -7.91 9.06 -40.52 -0.37 -8.27 16 14 C 0.49 9.98 6.35 34.61 0.22 10.20 16 15 O -0.50 -11.22 13.53 -19.24 -0.26 -11.48 16 16 C -0.05 -0.84 5.87 -104.98 -0.62 -1.46 16 17 C -0.08 -1.15 9.60 -39.17 -0.38 -1.52 16 18 C -0.03 -0.39 9.50 -39.64 -0.38 -0.76 16 19 C -0.66 -7.44 5.98 -39.48 -0.24 -7.68 16 20 S 2.69 27.80 5.69 -107.50 -0.61 27.19 16 21 O -0.95 -11.79 15.82 -57.17 -0.90 -12.70 16 22 O -0.95 -11.72 15.87 -57.17 -0.91 -12.63 16 23 N -1.00 -7.58 3.58 -129.20 -0.46 -8.04 16 24 C 0.08 0.49 10.67 59.85 0.64 1.13 16 25 C 0.08 0.46 10.70 59.85 0.64 1.10 16 26 C -0.03 -0.40 9.50 -39.64 -0.38 -0.78 16 27 C -0.08 -1.18 9.62 -39.17 -0.38 -1.55 16 28 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 29 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.15 1.90 7.65 -52.48 -0.40 1.50 16 35 H 0.15 1.30 7.60 -52.49 -0.40 0.90 16 36 H 0.09 0.53 6.91 -51.93 -0.36 0.17 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 41 H 0.08 0.50 7.02 -51.93 -0.36 0.14 16 42 H 0.15 1.34 7.60 -52.49 -0.40 0.94 16 43 H 0.15 2.05 7.61 -52.48 -0.40 1.65 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -33.02 370.25 -9.28 -42.30 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.80 Total: 1.23 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.15 Total: -14.82 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.16 Total: -31.89 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -2.44 Total: -45.08 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 27.80 SS G_CDS: -0.61 Total: 27.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.02 -9.28 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.645 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds