Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46661 * 2 1 4 4 H 1.09000 * 109.47300 * 55.00533 * 3 2 1 5 5 C 1.50707 * 109.46848 * 174.99518 * 3 2 1 6 6 H 1.08004 * 119.99502 * 119.99788 * 5 3 2 7 7 C 1.37874 * 120.00135 * 300.00418 * 5 3 2 8 8 N 1.31507 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99783 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47295 * 60.00047 * 9 7 5 11 11 H 1.48503 * 109.46935 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47274 * 299.99899 * 9 7 5 13 13 O 1.45200 * 109.47360 * 294.99854 * 3 2 1 14 14 C 1.34710 * 117.00020 * 90.00244 * 13 3 2 15 15 O 1.21468 * 119.99450 * 0.02562 * 14 13 3 16 16 C 1.47725 * 119.99820 * 179.97438 * 14 13 3 17 17 C 1.39634 * 120.14694 * 179.97438 * 16 14 13 18 18 C 1.37936 * 119.84494 * 180.02562 * 17 16 14 19 19 C 1.38369 * 120.15524 * 0.02562 * 18 17 16 20 20 S 1.76199 * 119.85120 * 179.97438 * 19 18 17 21 21 O 1.42100 * 106.40198 * 203.54234 * 20 19 18 22 22 O 1.42096 * 106.39959 * 336.46299 * 20 19 18 23 23 N 1.65599 * 107.21658 * 90.00290 * 20 19 18 24 24 C 1.46499 * 120.00337 * 89.99803 * 23 20 19 25 25 C 1.46502 * 119.99727 * 269.99791 * 23 20 19 26 26 C 1.38374 * 120.30031 * 0.23299 * 19 18 17 27 27 C 1.37950 * 120.14726 * 359.48861 * 26 19 18 28 28 H 1.08996 * 109.47341 * 299.99921 * 1 2 3 29 29 H 1.09003 * 109.46651 * 60.00111 * 1 2 3 30 30 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47108 * 240.00535 * 2 1 3 32 32 H 1.08994 * 109.47386 * 119.99680 * 2 1 3 33 33 H 0.96999 * 120.00450 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.07266 * 0.02562 * 17 16 14 35 35 H 1.08002 * 119.92606 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.46765 * 0.02562 * 24 23 20 37 37 H 1.09001 * 109.46951 * 119.99508 * 24 23 20 38 38 H 1.08994 * 109.47226 * 240.00100 * 24 23 20 39 39 H 1.09004 * 109.46955 * 90.00036 * 25 23 20 40 40 H 1.09003 * 109.47115 * 210.00083 * 25 23 20 41 41 H 1.08994 * 109.47486 * 330.00188 * 25 23 20 42 42 H 1.08000 * 119.92652 * 179.72459 * 26 19 18 43 43 H 1.08003 * 120.07432 * 180.25578 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1240 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.5003 2.2801 1.3810 11 1 6.3977 0.2169 2.6505 12 1 6.5967 0.1455 0.2344 13 8 1.6558 2.0918 -1.2407 14 6 0.4684 2.7278 -1.2560 15 8 -0.2268 2.7400 -0.2600 16 6 0.0124 3.4111 -2.4837 17 6 -1.2182 4.0709 -2.5033 18 6 -1.6381 4.7065 -3.6532 19 6 -0.8434 4.6910 -4.7858 20 16 -1.3880 5.5049 -6.2505 21 8 -0.7060 4.8842 -7.3317 22 8 -2.8044 5.5793 -6.1651 23 7 -0.8327 7.0635 -6.1805 24 6 0.4780 7.4001 -6.7415 25 6 -1.6524 8.1057 -5.5574 26 6 0.3747 4.0345 -4.7750 27 6 0.8095 3.3997 -3.6300 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0609 2.9500 34 1 -1.8396 4.0834 -1.6200 35 1 -2.5894 5.2175 -3.6696 36 1 0.9359 6.5031 -7.1585 37 1 0.3561 8.1447 -7.5282 38 1 1.1170 7.8030 -5.9558 39 1 -1.4163 8.1669 -4.4950 40 1 -1.4433 9.0645 -6.0318 41 1 -2.7072 7.8612 -5.6817 42 1 0.9881 4.0224 -5.6638 43 1 1.7623 2.8912 -3.6217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -151.762512 kcal Electronic energy + Delta-G solvation = -27523.743090 eV Core-core repulsion = 23467.567935 eV Total energy + Delta-G solvation = -4056.175155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68479 -39.97103 -38.49995 -37.69645 -37.15232 -36.95441 -35.58053 -33.52019 -32.72844 -32.29984 -29.38902 -28.93422 -26.34596 -25.55241 -25.01016 -23.97908 -22.64480 -21.51153 -20.21834 -19.48350 -18.96327 -18.62171 -18.44840 -17.65525 -17.29367 -17.14831 -16.59552 -16.08448 -15.89591 -15.55040 -15.32541 -15.07567 -14.83090 -14.70843 -14.51581 -14.30858 -13.99797 -13.76043 -13.61318 -13.44300 -13.33924 -13.29380 -13.21206 -13.17637 -12.84039 -12.60526 -12.59043 -12.55511 -12.44335 -12.19060 -12.16109 -11.81630 -11.57596 -11.41668 -10.88766 -10.70187 -10.55419 -10.26602 -10.05782 -8.29790 -6.47100 -0.99589 -0.68395 0.10022 1.25133 1.41085 1.44647 1.52391 1.80530 1.89528 2.38327 2.39931 2.63547 3.00170 3.11567 3.53232 3.72037 3.73413 3.87896 4.08080 4.16455 4.32282 4.34211 4.40849 4.47626 4.54337 4.62898 4.74069 4.74272 4.80852 4.81820 4.84512 4.99163 5.02241 5.03840 5.07913 5.11207 5.15286 5.29994 5.47255 5.53321 5.54213 5.61674 5.88427 6.04115 6.55051 6.82861 7.23681 8.76883 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.002568 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.322400 B =10900.941652 C =11612.011559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.264 1.264 13 O -0.353 6.353 14 C 0.486 3.514 15 O -0.530 6.530 16 C -0.080 4.080 17 C -0.085 4.085 18 C -0.028 4.028 19 C -0.655 4.655 20 S 2.713 3.287 21 O -0.971 6.971 22 O -0.972 6.972 23 N -0.999 5.999 24 C 0.073 3.927 25 C 0.071 3.929 26 C -0.030 4.030 27 C -0.088 4.088 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.271 0.729 34 H 0.149 0.851 35 H 0.174 0.826 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.172 0.828 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 15.265 -17.621 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.188 1.188 13 O -0.269 6.269 14 C 0.331 3.669 15 O -0.422 6.422 16 C -0.082 4.082 17 C -0.104 4.104 18 C -0.047 4.047 19 C -0.740 4.740 20 S 2.802 3.198 21 O -0.962 6.962 22 O -0.962 6.962 23 N -0.840 5.840 24 C -0.071 4.071 25 C -0.074 4.074 26 C -0.048 4.048 27 C -0.107 4.107 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.191 0.809 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.190 0.810 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.300 14.799 -17.774 24.573 hybrid contribution 1.126 -0.486 1.618 2.030 sum -7.174 14.314 -16.156 22.746 Atomic orbital electron populations 1.21728 0.96403 1.00718 1.00001 1.21887 0.94358 0.98049 1.02531 1.20465 0.94752 0.89262 0.78213 0.97267 1.21283 0.90260 1.40276 1.07072 0.91369 1.25794 1.04259 0.93790 0.94304 1.69995 1.37581 1.37733 1.09848 0.85258 0.77606 0.78812 0.77900 1.19328 1.20314 1.18834 1.86512 1.34765 1.62718 1.42908 1.21696 0.80216 0.76523 0.88415 1.90768 1.55802 1.59227 1.36394 1.19711 0.97076 0.99478 0.91900 1.21532 0.93947 0.94923 1.00001 1.21109 0.99017 0.94817 0.89719 1.31497 1.05431 1.16207 1.20870 1.01399 0.72794 0.72591 0.73039 1.93561 1.75822 1.75818 1.50962 1.93548 1.29159 1.86407 1.87083 1.57105 1.29761 1.24009 1.73147 1.21883 0.81980 1.03450 0.99834 1.21890 0.95026 0.91748 0.98697 1.21176 0.93518 0.91730 0.98422 1.21785 1.00100 0.97386 0.91413 0.94332 0.94791 0.91898 0.93462 0.89303 0.91953 0.83342 0.80862 0.89729 0.89665 0.90380 0.91406 0.88064 0.90010 0.81028 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.56 71.98 0.62 -5.16 16 2 C -0.13 -6.52 5.49 30.60 0.17 -6.35 16 3 C 0.23 12.17 2.25 29.85 0.07 12.24 16 4 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 5 C -0.55 -30.73 8.90 25.60 0.23 -30.51 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.64 11.29 21.44 0.24 -51.39 16 9 Si 0.98 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 O -0.35 -16.73 9.06 -56.20 -0.51 -17.24 16 14 C 0.49 20.61 6.35 70.33 0.45 21.06 16 15 O -0.53 -24.84 13.53 19.94 0.27 -24.57 16 16 C -0.08 -2.60 5.87 -20.10 -0.12 -2.72 16 17 C -0.09 -2.28 9.60 22.54 0.22 -2.06 16 18 C -0.03 -0.58 9.50 22.23 0.21 -0.37 16 19 C -0.65 -13.30 5.98 22.33 0.13 -13.17 16 20 S 2.71 49.53 5.69 -56.49 -0.32 49.21 16 21 O -0.97 -21.93 15.82 -128.00 -2.03 -23.95 16 22 O -0.97 -21.73 15.87 -128.00 -2.03 -23.76 16 23 N -1.00 -12.16 3.58 -562.68 -2.02 -14.18 16 24 C 0.07 0.63 10.67 127.77 1.36 1.99 16 25 C 0.07 0.59 10.70 127.77 1.37 1.96 16 26 C -0.03 -0.63 9.50 22.23 0.21 -0.42 16 27 C -0.09 -2.40 9.62 22.54 0.22 -2.18 16 28 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 29 H 0.03 1.44 6.06 -2.39 -0.01 1.43 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 4.85 5.95 -2.39 -0.01 4.83 16 33 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.15 3.85 7.65 -2.91 -0.02 3.83 16 35 H 0.17 2.62 7.60 -2.91 -0.02 2.60 16 36 H 0.08 0.80 6.91 -2.38 -0.02 0.78 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 41 H 0.08 0.76 7.02 -2.39 -0.02 0.74 16 42 H 0.17 2.72 7.60 -2.91 -0.02 2.70 16 43 H 0.15 4.08 7.61 -2.91 -0.02 4.06 16 Total: -1.00 -72.80 370.25 2.24 -70.56 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.02 Total: 15.44 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 5.58 Total: -24.24 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -1.77 Total: -65.57 kcal Atomic # 8 Polarization: -85.22 SS G_CDS: -4.30 Total: -89.52 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.32 Total: 49.21 kcal Total: -72.80 2.24 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.198 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds