Wall clock time and date at job start Sat Apr 11 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47173 * 119.99725 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47725 * 119.99570 * 180.27322 * 14 13 3 17 17 C 1.39645 * 120.15275 * 359.44519 * 16 14 13 18 18 C 1.37921 * 119.84858 * 179.69905 * 17 16 14 19 19 C 1.38389 * 120.14896 * 0.58091 * 18 17 16 20 20 C 1.38340 * 120.30335 * 359.71669 * 19 18 17 21 21 S 1.76204 * 119.92644 * 180.02562 * 20 19 18 22 22 O 1.42101 * 106.40273 * 23.51430 * 21 20 19 23 23 O 1.42097 * 106.40346 * 156.43801 * 21 20 19 24 24 N 1.65601 * 107.21774 * 269.97970 * 21 20 19 25 25 C 1.46502 * 120.00083 * 89.99721 * 24 21 20 26 26 C 1.46504 * 119.99815 * 269.99944 * 24 21 20 27 27 C 1.37969 * 120.15144 * 359.97438 * 20 19 18 28 28 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 29 29 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 30 30 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 32 32 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 33 33 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 34 34 H 1.08000 * 120.07678 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.92443 * 180.29605 * 18 17 16 36 36 H 1.08004 * 119.85175 * 179.73991 * 19 18 17 37 37 H 1.09000 * 109.47101 * 89.99954 * 25 24 21 38 38 H 1.09001 * 109.46932 * 210.00294 * 25 24 21 39 39 H 1.09000 * 109.47023 * 330.00041 * 25 24 21 40 40 H 1.09000 * 109.47149 * 90.00162 * 26 24 21 41 41 H 1.09001 * 109.46974 * 209.99541 * 26 24 21 42 42 H 1.08995 * 109.46905 * 329.99710 * 26 24 21 43 43 H 1.07997 * 120.07799 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6090 12 1 6.4962 -0.5192 1.4625 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0095 3.4055 -2.4856 17 6 0.8090 3.3986 -3.6305 18 6 0.3715 4.0281 -4.7771 19 6 -0.8515 4.6757 -4.7910 20 6 -1.6458 4.6917 -3.6585 21 16 -3.2014 5.5188 -3.6875 22 8 -3.6040 5.5687 -5.0493 23 8 -3.9902 4.9258 -2.6650 24 7 -2.9326 7.0850 -3.2217 25 6 -2.6176 8.1041 -4.2260 26 6 -3.0097 7.4516 -1.8054 27 6 -1.2232 4.0606 -2.5067 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8293 -0.0614 2.9497 34 1 1.7657 2.8978 -3.6196 35 1 0.9867 4.0194 -5.6647 36 1 -1.1875 5.1706 -5.6902 37 1 -3.5410 8.5606 -4.5824 38 1 -1.9824 8.8694 -3.7801 39 1 -2.0951 7.6404 -5.0627 40 1 -2.0273 7.3387 -1.3469 41 1 -3.3357 8.4878 -1.7155 42 1 -3.7234 6.8010 -1.3001 43 1 -1.8444 4.0735 -1.6233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090797.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:42 Heat of formation + Delta-G solvation = -153.103126 kcal Electronic energy + Delta-G solvation = -27827.867321 eV Core-core repulsion = 23771.634033 eV Total energy + Delta-G solvation = -4056.233289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64947 -39.96156 -38.51554 -37.65551 -37.17210 -36.99482 -35.56695 -33.50415 -32.67390 -32.38039 -29.37718 -28.97419 -26.06861 -25.65126 -24.93931 -24.31744 -22.59574 -21.60164 -20.29700 -19.51470 -18.71103 -18.53140 -18.23382 -17.31857 -17.24230 -17.14344 -17.04847 -16.43042 -16.08190 -15.46408 -15.34638 -15.10778 -14.92249 -14.79276 -14.44422 -14.13608 -13.83105 -13.57296 -13.53130 -13.45201 -13.38983 -13.34188 -13.27015 -13.14967 -12.88644 -12.83279 -12.65997 -12.58591 -12.54857 -12.14752 -12.02435 -11.80955 -11.54854 -11.39967 -10.86844 -10.68019 -10.56124 -10.30019 -10.08239 -8.29359 -6.46580 -0.82522 -0.56891 -0.23201 1.38627 1.41423 1.42281 1.55396 1.81849 1.88925 2.38659 2.40612 2.62545 3.00575 3.13020 3.59855 3.65472 3.83614 3.86332 3.95935 4.15254 4.31643 4.34088 4.35610 4.49578 4.53073 4.54419 4.61998 4.76004 4.77932 4.81438 4.96006 4.97200 5.02110 5.05414 5.06506 5.07380 5.15939 5.30706 5.48267 5.51265 5.56693 5.62178 5.90386 6.05114 6.56956 6.86512 7.24363 8.77837 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.002710 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.124846 B =10330.639899 C =10528.571207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.490 3.510 15 O -0.539 6.539 16 C -0.157 4.157 17 C -0.013 4.013 18 C -0.134 4.134 19 C 0.012 3.988 20 C -0.693 4.693 21 S 2.711 3.289 22 O -0.964 6.964 23 O -0.985 6.985 24 N -1.000 6.000 25 C 0.079 3.921 26 C 0.072 3.928 27 C 0.026 3.974 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.271 0.729 34 H 0.153 0.847 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 15.475 -16.439 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.026 0.974 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.198 1.198 13 O -0.269 6.269 14 C 0.336 3.664 15 O -0.432 6.432 16 C -0.159 4.159 17 C -0.031 4.031 18 C -0.152 4.152 19 C -0.007 4.007 20 C -0.778 4.778 21 S 2.800 3.200 22 O -0.954 6.954 23 O -0.975 6.975 24 N -0.842 5.842 25 C -0.065 4.065 26 C -0.073 4.073 27 C 0.006 3.994 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.203 0.797 36 H 0.198 0.802 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.528 15.021 -16.166 24.037 hybrid contribution 1.420 -0.537 1.213 1.943 sum -8.108 14.484 -14.953 22.341 Atomic orbital electron populations 1.21734 0.96595 1.00651 0.99950 1.21880 0.94161 0.98127 1.02560 1.20460 0.94800 0.89221 0.78304 0.97439 1.21332 0.90142 1.40058 1.07031 0.91293 1.25823 1.04318 0.93827 0.94331 1.70020 1.37460 1.37854 1.09893 0.85135 0.77546 0.78297 0.78425 1.18577 1.20242 1.19762 1.86490 1.34793 1.62827 1.42812 1.21636 0.80101 0.76307 0.88366 1.90772 1.55984 1.59668 1.36741 1.19391 0.98048 1.05293 0.93179 1.22101 0.98452 0.91666 0.90895 1.21764 0.96980 0.97533 0.98899 1.21658 0.91652 0.91316 0.96045 1.31077 1.26333 1.19637 1.00785 1.01403 0.73366 0.72559 0.72650 1.93555 1.80524 1.86577 1.34763 1.93555 1.67172 1.76907 1.59906 1.57149 1.87094 1.24413 1.15509 1.21867 1.02518 0.91721 0.90431 1.21855 1.02748 1.04246 0.78461 1.20910 0.92672 0.88731 0.97086 0.94497 0.94893 0.91888 0.93330 0.89311 0.91997 0.82977 0.79705 0.80203 0.91156 0.88516 0.89855 0.92052 0.87446 0.90901 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.56 71.98 0.62 -5.39 16 2 C -0.13 -6.57 5.49 30.60 0.17 -6.40 16 3 C 0.23 12.27 2.25 29.85 0.07 12.34 16 4 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 5 C -0.55 -30.65 8.90 25.60 0.23 -30.43 16 6 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -52.01 11.29 21.45 0.24 -51.77 16 9 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 O -0.35 -16.92 9.06 -56.19 -0.51 -17.43 16 14 C 0.49 21.49 6.35 70.33 0.45 21.94 16 15 O -0.54 -26.59 13.53 19.92 0.27 -26.32 16 16 C -0.16 -5.25 5.87 -20.10 -0.12 -5.37 16 17 C -0.01 -0.33 9.62 22.53 0.22 -0.11 16 18 C -0.13 -2.26 10.03 22.23 0.22 -2.03 16 19 C 0.01 0.21 9.52 22.33 0.21 0.42 16 20 C -0.69 -15.85 5.97 22.23 0.13 -15.72 16 21 S 2.71 59.37 5.65 -56.49 -0.32 59.05 16 22 O -0.96 -22.51 16.34 -128.00 -2.09 -24.60 16 23 O -0.99 -29.00 15.88 -128.00 -2.03 -31.03 16 24 N -1.00 -15.36 3.58 -562.68 -2.02 -17.38 16 25 C 0.08 0.70 10.29 127.77 1.31 2.02 16 26 C 0.07 1.00 10.66 127.77 1.36 2.36 16 27 C 0.03 0.77 9.07 22.54 0.20 0.97 16 28 H 0.04 1.77 7.79 -2.39 -0.02 1.76 16 29 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 4.90 5.95 -2.39 -0.01 4.89 16 33 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.15 3.78 7.61 -2.91 -0.02 3.75 16 35 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.18 1.77 7.60 -2.91 -0.02 1.74 16 37 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.47 8.07 -2.39 -0.02 0.45 16 39 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.87 8.07 -2.39 -0.02 0.85 16 42 H 0.07 1.23 7.02 -2.39 -0.02 1.21 16 43 H 0.14 4.45 7.20 -2.91 -0.02 4.43 16 Total: -1.00 -76.47 371.13 2.11 -74.36 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.02 Total: 14.92 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.52 Total: -24.03 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.77 Total: -69.15 kcal Atomic # 8 Polarization: -95.01 SS G_CDS: -4.36 Total: -99.37 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 59.37 SS G_CDS: -0.32 Total: 59.05 kcal Total: -76.47 2.11 -74.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090797.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.746 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds