Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47864 * 2 1 4 4 C 1.53004 * 109.47478 * 180.02562 * 3 2 1 5 5 O 1.45196 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.34228 * 116.99813 * 179.97438 * 5 4 3 7 7 O 1.20819 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99634 * 179.97438 * 6 5 4 9 9 N 1.46505 * 109.47019 * 180.02562 * 8 6 5 10 10 S 1.65597 * 120.00072 * 164.99885 * 9 8 6 11 11 O 1.42098 * 106.40087 * 311.45861 * 10 9 8 12 12 O 1.42098 * 106.39917 * 178.54168 * 10 9 8 13 13 C 1.76200 * 107.21637 * 65.00174 * 10 9 8 14 14 C 1.38663 * 119.87357 * 270.24777 * 13 10 9 15 15 C 1.38609 * 120.49761 * 180.30197 * 14 13 10 16 16 C 1.37636 * 120.25144 * 359.45034 * 15 14 13 17 17 C 1.40702 * 119.74414 * 0.27080 * 16 15 14 18 18 C 1.41389 * 120.24759 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00485 * 204.39220 * 18 17 16 20 20 C 1.39942 * 119.99857 * 24.38333 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.87213 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.86702 * 20 18 17 23 23 H 1.48500 * 109.46633 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46828 * 120.00062 * 22 20 18 25 25 H 1.48497 * 109.47200 * 240.00400 * 22 20 18 26 26 C 1.37598 * 119.87586 * 90.00318 * 13 10 9 27 27 H 1.09008 * 109.46786 * 300.00418 * 1 2 3 28 28 H 1.09004 * 109.46779 * 59.99270 * 1 2 3 29 29 H 1.08993 * 109.47888 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46786 * 239.99582 * 2 1 3 31 31 H 1.09004 * 109.46779 * 120.00730 * 2 1 3 32 32 H 1.09008 * 109.47260 * 59.99872 * 3 2 1 33 33 H 1.09004 * 109.47518 * 300.00278 * 3 2 1 34 34 H 1.08995 * 109.47086 * 59.99856 * 4 3 2 35 35 H 1.09003 * 109.46398 * 299.99773 * 4 3 2 36 36 H 1.08997 * 109.47129 * 59.99961 * 8 6 5 37 37 H 1.09003 * 109.47087 * 299.99648 * 8 6 5 38 38 H 0.97007 * 119.99457 * 345.00299 * 9 8 6 39 39 H 1.08001 * 119.74681 * 0.04757 * 14 13 10 40 40 H 1.08003 * 119.87315 * 179.72263 * 15 14 13 41 41 H 1.07999 * 120.13059 * 180.25214 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.12829 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 3.5702 1.4422 -0.0006 5 8 4.0543 2.8111 0.0000 6 6 5.3850 2.9868 0.0000 7 8 6.1209 2.0286 0.0001 8 6 5.9611 4.3794 0.0001 9 7 7.4241 4.3027 -0.0004 10 16 8.3235 5.6427 -0.3717 11 8 7.7694 6.1797 -1.5650 12 8 9.6859 5.2571 -0.2523 13 6 8.0308 6.8340 0.8930 14 6 6.9908 7.7415 0.7597 15 6 6.7529 8.6882 1.7438 16 6 7.5413 8.7298 2.8712 17 6 8.5958 7.8102 3.0198 18 6 9.4128 7.8437 4.1733 19 1 10.4163 7.4463 4.1361 20 6 8.9210 8.3919 5.3633 21 7 7.6327 8.5502 5.5273 22 14 10.1040 8.8976 6.7177 23 1 11.4976 8.6176 6.2876 24 1 9.9528 10.3496 6.9903 25 1 9.8022 8.1282 7.9514 26 6 8.8318 6.8571 2.0116 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9331 0.9285 -0.8908 35 1 3.9337 0.9282 0.8892 36 1 5.6251 4.9116 0.8900 37 1 5.6253 4.9116 -0.8900 38 1 7.8660 3.4668 0.2167 39 1 6.3642 7.7131 -0.1194 40 1 5.9429 9.3931 1.6275 41 1 7.3516 9.4656 3.6386 42 1 7.2919 8.9299 6.3523 43 1 9.6385 6.1466 2.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795108717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = -160.811983 kcal Electronic energy + Delta-G solvation = -26702.683795 eV Core-core repulsion = 22646.116225 eV Total energy + Delta-G solvation = -4056.567570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66686 -37.68996 -37.28201 -36.74591 -35.39249 -35.34163 -34.72608 -33.88609 -30.12558 -30.10649 -29.84264 -27.55583 -25.53127 -23.99234 -21.96120 -21.58655 -21.25182 -20.99640 -19.38126 -18.25523 -17.70152 -17.30285 -17.06016 -16.39877 -15.98024 -15.70747 -15.43960 -15.16773 -14.83718 -14.44460 -14.22741 -14.08615 -13.55075 -13.40011 -13.36164 -13.13431 -12.62104 -12.43150 -12.17456 -11.95749 -11.82446 -11.67929 -11.67697 -11.60570 -11.47724 -11.45416 -11.41122 -11.17613 -11.03328 -10.94597 -10.73410 -10.66770 -10.62618 -9.90683 -9.75275 -9.39383 -9.33307 -8.09766 -7.75310 -6.96966 -4.57370 0.86502 2.00963 2.12599 2.39220 2.58706 2.98545 3.01695 3.05465 3.46197 3.80485 4.16468 4.26414 4.38843 4.47679 4.55409 4.73828 4.85524 4.88072 5.04899 5.10517 5.12271 5.25911 5.35551 5.37741 5.38181 5.48832 5.64858 5.69948 5.79723 5.88183 6.01033 6.12304 6.20201 6.62022 6.71917 6.78714 6.98823 7.08539 7.17127 7.33106 7.54058 7.67984 7.77368 7.90230 8.36628 8.62884 8.67559 9.98360 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.002631 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.307505 B =10639.132725 C =11989.176443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.065 3.935 5 O -0.354 6.354 6 C 0.466 3.534 7 O -0.502 6.502 8 C 0.130 3.870 9 N -1.115 6.115 10 S 2.694 3.306 11 O -0.972 6.972 12 O -0.963 6.963 13 C -0.633 4.633 14 C -0.152 4.152 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.091 3.909 18 C -0.458 4.458 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.122 4.122 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.424 0.576 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -10.513 -6.323 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.008 4.008 5 O -0.270 6.270 6 C 0.308 3.692 7 O -0.389 6.389 8 C 0.002 3.998 9 N -0.876 5.876 10 S 2.790 3.210 11 O -0.962 6.962 12 O -0.954 6.954 13 C -0.725 4.725 14 C -0.174 4.174 15 C -0.139 4.139 16 C -0.138 4.138 17 C 0.087 3.913 18 C -0.487 4.487 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.260 0.740 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.305 -10.556 -6.951 16.958 hybrid contribution 0.285 0.017 1.564 1.589 sum -11.021 -10.540 -5.388 16.173 Atomic orbital electron populations 1.21749 0.95084 1.01883 1.02189 1.21437 0.96475 0.95541 1.02551 1.21631 0.92249 0.97925 1.04081 1.23147 0.94990 0.79873 1.02825 1.86474 1.23969 1.32596 1.83954 1.23576 0.80826 0.92592 0.72249 1.90653 1.60355 1.42704 1.45224 1.20624 0.81038 0.91581 1.06577 1.55592 1.13353 1.29433 1.89256 1.01594 0.72492 0.72520 0.74374 1.93517 1.79540 1.78551 1.44571 1.93558 1.31832 1.82576 1.87427 1.29695 1.08692 1.17743 1.16411 1.20094 0.98571 0.99148 0.99548 1.20810 0.99532 0.98592 0.94919 1.21655 0.96955 0.98801 0.96411 1.17702 0.92051 0.89553 0.91990 1.19669 1.00735 1.34499 0.93823 0.89799 1.25949 0.95477 0.92992 0.99960 1.69786 1.13390 1.32053 1.26565 0.86199 0.81489 0.79047 0.79729 1.18177 1.19568 1.19847 1.20804 0.99611 0.99822 0.94126 0.92447 0.92493 0.92486 0.91633 0.91575 0.90486 0.90579 0.91074 0.91003 0.86602 0.85947 0.73966 0.87415 0.88283 0.85706 0.90590 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.72 5.93 -26.74 -0.16 -0.87 16 3 C -0.12 -0.86 5.59 -26.73 -0.15 -1.01 16 4 C 0.07 0.61 5.47 37.16 0.20 0.81 16 5 O -0.35 -4.03 10.22 -39.25 -0.40 -4.43 16 6 C 0.47 6.05 8.03 36.01 0.29 6.33 16 7 O -0.50 -7.59 15.48 -18.74 -0.29 -7.88 16 8 C 0.13 1.64 6.81 -5.19 -0.04 1.61 16 9 N -1.12 -16.57 5.93 -11.65 -0.07 -16.63 16 10 S 2.69 48.75 5.73 -107.50 -0.62 48.14 16 11 O -0.97 -18.70 16.74 -57.17 -0.96 -19.66 16 12 O -0.96 -19.92 17.27 -57.17 -0.99 -20.91 16 13 C -0.63 -13.18 5.94 -39.66 -0.24 -13.41 16 14 C -0.15 -3.10 9.53 -39.29 -0.37 -3.47 16 15 C -0.12 -2.54 10.02 -39.66 -0.40 -2.94 16 16 C -0.12 -2.85 8.70 -38.87 -0.34 -3.19 16 17 C 0.09 2.28 5.58 -106.82 -0.60 1.69 16 18 C -0.46 -11.54 9.05 -37.75 -0.34 -11.88 16 19 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 20 C 0.07 1.76 5.14 -17.34 -0.09 1.68 16 21 N -0.79 -19.15 10.95 55.55 0.61 -18.55 16 22 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.12 -2.85 9.26 -38.87 -0.36 -3.21 16 27 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 36 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.12 1.34 7.75 -51.93 -0.40 0.94 16 38 H 0.42 6.03 7.71 -34.48 -0.27 5.77 16 39 H 0.11 1.91 7.61 -52.49 -0.40 1.51 16 40 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.13 3.07 6.15 -52.49 -0.32 2.75 16 42 H 0.28 6.18 8.30 -40.82 -0.34 5.85 16 43 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -30.74 380.70 -10.21 -40.95 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.99 Total: 8.78 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.22 Total: -28.31 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.54 Total: -35.18 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -2.64 Total: -52.88 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -0.62 Total: 48.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.74 -10.21 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795108717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.863 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds