Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47864 * 2 1 4 4 C 1.53004 * 109.47478 * 180.02562 * 3 2 1 5 5 O 1.45196 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.34228 * 116.99813 * 179.97438 * 5 4 3 7 7 O 1.20819 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99634 * 179.97438 * 6 5 4 9 9 N 1.46505 * 109.47019 * 180.02562 * 8 6 5 10 10 S 1.65597 * 120.00072 * 164.99885 * 9 8 6 11 11 O 1.42098 * 106.40087 * 311.45861 * 10 9 8 12 12 O 1.42098 * 106.39917 * 178.54168 * 10 9 8 13 13 C 1.76200 * 107.21637 * 65.00174 * 10 9 8 14 14 C 1.38663 * 119.87357 * 270.24777 * 13 10 9 15 15 C 1.38609 * 120.49761 * 180.30197 * 14 13 10 16 16 C 1.37636 * 120.25144 * 359.45034 * 15 14 13 17 17 C 1.40702 * 119.74414 * 0.27080 * 16 15 14 18 18 C 1.41389 * 120.24759 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00485 * 204.39220 * 18 17 16 20 20 C 1.39942 * 119.99857 * 24.38333 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.87213 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.86702 * 20 18 17 23 23 H 1.48500 * 109.46633 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46828 * 120.00062 * 22 20 18 25 25 H 1.48497 * 109.47200 * 240.00400 * 22 20 18 26 26 C 1.37598 * 119.87586 * 90.00318 * 13 10 9 27 27 H 1.09008 * 109.46786 * 300.00418 * 1 2 3 28 28 H 1.09004 * 109.46779 * 59.99270 * 1 2 3 29 29 H 1.08993 * 109.47888 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46786 * 239.99582 * 2 1 3 31 31 H 1.09004 * 109.46779 * 120.00730 * 2 1 3 32 32 H 1.09008 * 109.47260 * 59.99872 * 3 2 1 33 33 H 1.09004 * 109.47518 * 300.00278 * 3 2 1 34 34 H 1.08995 * 109.47086 * 59.99856 * 4 3 2 35 35 H 1.09003 * 109.46398 * 299.99773 * 4 3 2 36 36 H 1.08997 * 109.47129 * 59.99961 * 8 6 5 37 37 H 1.09003 * 109.47087 * 299.99648 * 8 6 5 38 38 H 0.97007 * 119.99457 * 345.00299 * 9 8 6 39 39 H 1.08001 * 119.74681 * 0.04757 * 14 13 10 40 40 H 1.08003 * 119.87315 * 179.72263 * 15 14 13 41 41 H 1.07999 * 120.13059 * 180.25214 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.12829 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4423 0.0000 4 6 3.5702 1.4422 -0.0006 5 8 4.0543 2.8111 0.0000 6 6 5.3850 2.9868 0.0000 7 8 6.1209 2.0286 0.0001 8 6 5.9611 4.3794 0.0001 9 7 7.4241 4.3027 -0.0004 10 16 8.3235 5.6427 -0.3717 11 8 7.7694 6.1797 -1.5650 12 8 9.6859 5.2571 -0.2523 13 6 8.0308 6.8340 0.8930 14 6 6.9908 7.7415 0.7597 15 6 6.7529 8.6882 1.7438 16 6 7.5413 8.7298 2.8712 17 6 8.5958 7.8102 3.0198 18 6 9.4128 7.8437 4.1733 19 1 10.4163 7.4463 4.1361 20 6 8.9210 8.3919 5.3633 21 7 7.6327 8.5502 5.5273 22 14 10.1040 8.8976 6.7177 23 1 11.4976 8.6176 6.2876 24 1 9.9528 10.3496 6.9903 25 1 9.8022 8.1282 7.9514 26 6 8.8318 6.8571 2.0116 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9331 0.9285 -0.8908 35 1 3.9337 0.9282 0.8892 36 1 5.6251 4.9116 0.8900 37 1 5.6253 4.9116 -0.8900 38 1 7.8660 3.4668 0.2167 39 1 6.3642 7.7131 -0.1194 40 1 5.9429 9.3931 1.6275 41 1 7.3516 9.4656 3.6386 42 1 7.2919 8.9299 6.3523 43 1 9.6385 6.1466 2.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795108717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -179.659484 kcal Electronic energy + Delta-G solvation = -26703.501084 eV Core-core repulsion = 22646.116225 eV Total energy + Delta-G solvation = -4057.384859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65553 -39.43014 -38.35633 -38.15088 -36.95436 -35.95430 -35.90135 -35.64505 -31.89194 -31.57329 -30.77257 -28.56055 -27.33048 -24.64655 -23.66719 -22.79685 -22.32311 -21.96216 -20.77368 -19.78643 -19.08341 -18.35129 -17.98461 -17.77743 -17.62253 -16.86153 -16.73870 -16.46348 -16.29337 -15.76954 -15.23883 -15.06878 -14.98686 -14.69442 -14.29294 -14.19973 -14.04337 -13.68415 -13.33068 -13.28738 -13.19076 -13.10465 -13.04501 -13.03504 -12.86231 -12.78922 -12.60625 -12.31664 -12.20473 -12.00141 -11.76767 -11.64601 -11.54387 -11.42783 -11.38378 -11.14062 -10.69516 -9.84032 -9.53854 -8.72868 -6.43823 -0.60964 0.40884 0.86305 1.00189 1.37730 1.42131 1.46085 1.52246 2.10758 2.18020 2.55762 2.74589 3.40580 3.42577 3.55417 3.88746 3.89435 4.10971 4.16935 4.26840 4.32204 4.32488 4.37212 4.49760 4.52725 4.58568 4.85984 4.88358 4.90351 4.93344 4.99032 5.07729 5.17515 5.21690 5.31571 5.34575 5.42508 5.45422 5.58234 5.86432 5.91932 5.96218 6.13177 6.54668 6.55762 6.81062 6.86305 8.24951 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.002631 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.307505 B =10639.132725 C =11989.176443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.059 3.941 5 O -0.352 6.352 6 C 0.471 3.529 7 O -0.528 6.528 8 C 0.119 3.881 9 N -1.108 6.108 10 S 2.731 3.269 11 O -0.975 6.975 12 O -0.990 6.990 13 C -0.638 4.638 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.060 3.940 18 C -0.498 4.498 19 H 0.076 0.924 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.980 3.020 23 H -0.262 1.262 24 H -0.262 1.262 25 H -0.265 1.265 26 C -0.145 4.145 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.428 0.572 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -10.700 -7.071 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.015 4.015 5 O -0.268 6.268 6 C 0.314 3.686 7 O -0.417 6.417 8 C -0.008 4.008 9 N -0.871 5.871 10 S 2.824 3.176 11 O -0.965 6.965 12 O -0.980 6.980 13 C -0.728 4.728 14 C -0.163 4.163 15 C -0.140 4.140 16 C -0.160 4.160 17 C 0.057 3.943 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.177 4.177 21 N -0.445 5.445 22 Si 0.801 3.199 23 H -0.185 1.185 24 H -0.186 1.186 25 H -0.189 1.189 26 C -0.166 4.166 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.266 0.734 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.825 -10.722 -7.690 18.400 hybrid contribution 0.610 -0.010 1.652 1.761 sum -12.215 -10.732 -6.038 17.345 Atomic orbital electron populations 1.21752 0.94508 1.02343 1.02290 1.21441 0.96918 0.94686 1.02823 1.21630 0.90525 0.98839 1.04269 1.23400 0.96346 0.78822 1.02898 1.86471 1.22944 1.33914 1.83450 1.23557 0.81193 0.92285 0.71569 1.90649 1.61004 1.43473 1.46615 1.20939 0.79424 0.92009 1.08396 1.55261 1.14534 1.28348 1.88997 1.00531 0.71746 0.72089 0.73265 1.93507 1.79611 1.79132 1.44281 1.93521 1.34027 1.82924 1.87549 1.30145 1.07877 1.18638 1.16122 1.20568 0.98071 0.97658 1.00037 1.21174 0.99606 0.99194 0.94002 1.21675 0.97829 0.98970 0.97492 1.18046 0.92931 0.90533 0.92805 1.19862 1.00854 1.36869 0.95160 0.90607 1.26693 0.97013 0.92385 1.01654 1.69809 1.14655 1.32463 1.27615 0.85180 0.78906 0.78967 0.76851 1.18550 1.18633 1.18944 1.20858 1.00561 0.99999 0.95197 0.92506 0.92249 0.91883 0.91216 0.91523 0.90537 0.90132 0.90790 0.91241 0.85288 0.83624 0.73426 0.83910 0.85179 0.86961 0.89756 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.22 5.93 30.59 0.18 -1.04 16 3 C -0.12 -1.44 5.59 30.59 0.17 -1.27 16 4 C 0.06 1.01 5.47 71.98 0.39 1.40 16 5 O -0.35 -7.40 10.22 -51.40 -0.53 -7.92 16 6 C 0.47 11.43 8.03 71.24 0.57 12.00 16 7 O -0.53 -15.39 15.48 21.98 0.34 -15.05 16 8 C 0.12 2.73 6.81 85.63 0.58 3.31 16 9 N -1.11 -31.04 5.93 -190.77 -1.13 -32.18 16 10 S 2.73 94.56 5.73 -56.49 -0.32 94.24 16 11 O -0.98 -34.84 16.74 -128.00 -2.14 -36.99 16 12 O -0.99 -40.40 17.27 -128.00 -2.21 -42.61 16 13 C -0.64 -25.94 5.94 22.22 0.13 -25.81 16 14 C -0.14 -5.47 9.53 22.46 0.21 -5.25 16 15 C -0.12 -4.98 10.02 22.22 0.22 -4.76 16 16 C -0.14 -6.83 8.70 22.73 0.20 -6.63 16 17 C 0.06 3.12 5.58 -21.29 -0.12 3.00 16 18 C -0.50 -26.13 9.05 23.46 0.21 -25.92 16 19 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 20 C 0.04 1.85 5.14 85.25 0.44 2.28 16 21 N -0.82 -40.32 10.95 21.83 0.24 -40.08 16 22 Si 0.98 36.96 29.60 68.60 2.03 38.99 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 26 C -0.14 -6.91 9.26 22.73 0.21 -6.69 16 27 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 36 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.15 2.69 7.75 -2.39 -0.02 2.67 16 38 H 0.43 11.71 7.71 -96.74 -0.75 10.96 16 39 H 0.14 4.45 7.61 -2.91 -0.02 4.43 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 42 H 0.29 12.84 8.30 -92.70 -0.77 12.07 16 43 H 0.11 5.07 7.60 -2.91 -0.02 5.04 16 Total: -1.00 -66.19 380.70 0.68 -65.51 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.28 Total: 32.10 kcal Atomic # 6 Polarization: -60.13 SS G_CDS: 4.12 Total: -56.01 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -0.89 Total: -72.26 kcal Atomic # 8 Polarization: -98.03 SS G_CDS: -4.54 Total: -102.57 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 94.56 SS G_CDS: -0.32 Total: 94.24 kcal Total: -66.19 0.68 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795108717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.152 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds