Wall clock time and date at job start Sat Apr 11 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.62984 * 2 1 4 4 C 1.52993 * 109.47009 * 180.30920 * 3 2 1 5 5 N 1.46503 * 109.47174 * 179.97438 * 4 3 2 6 6 S 1.65599 * 120.00012 * 165.27283 * 5 4 3 7 7 O 1.42099 * 106.40254 * 178.26555 * 6 5 4 8 8 O 1.42099 * 106.40561 * 311.18985 * 6 5 4 9 9 C 1.76199 * 107.21742 * 64.72792 * 6 5 4 10 10 C 1.38663 * 119.87803 * 269.72779 * 9 6 5 11 11 C 1.38608 * 120.49900 * 179.72590 * 10 9 6 12 12 C 1.37643 * 120.25314 * 0.54496 * 11 10 9 13 13 C 1.40701 * 119.74074 * 359.72925 * 12 11 10 14 14 C 1.41392 * 120.24352 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00124 * 150.22284 * 14 13 12 16 16 C 1.39956 * 119.99767 * 330.22192 * 14 13 12 17 17 N 1.30820 * 119.99575 * 161.72579 * 16 14 13 18 18 Si 1.86798 * 120.00009 * 341.72427 * 16 14 13 19 19 H 1.48503 * 109.46818 * 95.41225 * 18 16 14 20 20 H 1.48497 * 109.46908 * 215.41096 * 18 16 14 21 21 H 1.48501 * 109.47252 * 335.41469 * 18 16 14 22 22 C 1.37597 * 119.87535 * 90.00185 * 9 6 5 23 23 O 1.43753 * 109.50953 * 120.32060 * 2 1 3 24 24 C 1.44784 * 104.81703 * 95.49170 * 23 2 1 25 25 C 1.54912 * 101.72170 * 36.10197 * 24 23 2 26 26 O 1.43370 * 109.63035 * 239.60641 * 2 1 3 27 27 H 1.09000 * 109.46887 * 60.00068 * 1 2 3 28 28 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46938 * 300.00300 * 1 2 3 30 30 H 1.09000 * 109.47069 * 60.31034 * 3 2 1 31 31 H 1.09001 * 109.46833 * 300.30974 * 3 2 1 32 32 H 1.09002 * 109.47474 * 59.99756 * 4 3 2 33 33 H 1.09001 * 109.47367 * 299.99727 * 4 3 2 34 34 H 0.97000 * 119.99787 * 345.00282 * 5 4 3 35 35 H 1.07996 * 119.73979 * 359.97438 * 10 9 6 36 36 H 1.08000 * 119.87490 * 180.25925 * 11 10 9 37 37 H 1.07995 * 120.12566 * 179.75233 * 12 11 10 38 38 H 0.96995 * 119.99795 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.12646 * 359.97175 * 22 9 6 40 40 H 1.09009 * 110.97092 * 277.99175 * 24 23 2 41 41 H 1.09001 * 111.00690 * 154.22972 * 24 23 2 42 42 H 1.09002 * 110.69164 * 206.04384 * 25 24 23 43 43 H 1.08992 * 110.69294 * 82.83716 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.5739 1.4368 -0.0078 5 7 4.0661 2.8167 -0.0084 6 16 5.6525 3.1301 0.3485 7 8 5.8216 4.5355 0.2249 8 8 5.9447 2.4140 1.5407 9 6 6.6277 2.3979 -0.9232 10 6 7.0740 1.0922 -0.7863 11 6 7.8372 0.5016 -1.7813 12 6 8.1699 1.2108 -2.9131 13 6 7.7274 2.5382 -3.0602 14 6 8.0626 3.2764 -4.2187 15 1 7.3966 4.0459 -4.5801 16 6 9.2574 3.0097 -4.8969 17 7 9.4122 3.4121 -6.1320 18 14 10.6311 2.0793 -4.0385 19 1 10.5397 0.6367 -4.3790 20 1 11.9435 2.6112 -4.4853 21 1 10.5018 2.2503 -2.5691 22 6 6.9484 3.1258 -2.0460 23 8 2.0101 -0.6841 1.1697 24 6 2.2600 -2.0403 0.7289 25 6 2.7855 -1.8118 -0.7103 26 8 2.0117 -0.6832 -1.1648 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6866 1.9543 0.8928 31 1 1.6776 1.9575 -0.8872 32 1 3.9314 0.9236 -0.9005 33 1 3.9404 0.9204 0.8794 34 1 3.4637 3.5464 -0.2217 35 1 6.8216 0.5300 0.1006 36 1 8.1759 -0.5174 -1.6660 37 1 8.7680 0.7499 -3.6852 38 1 10.2404 3.2277 -6.6020 39 1 6.6031 4.1439 -2.1488 40 1 1.3392 -2.6237 0.7202 41 1 3.0173 -2.5196 1.3494 42 1 2.5947 -2.6857 -1.3333 43 1 3.8483 -1.5704 -0.6985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795155131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:55 Heat of formation + Delta-G solvation = -149.325568 kcal Electronic energy + Delta-G solvation = -28195.422225 eV Core-core repulsion = 24139.352744 eV Total energy + Delta-G solvation = -4056.069481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85900 -37.92922 -36.77488 -35.82270 -35.37571 -35.20266 -33.78986 -32.77049 -30.73451 -30.17292 -28.89034 -28.68197 -25.39963 -23.47218 -23.33539 -22.39776 -21.21342 -20.90474 -19.22263 -18.08246 -17.60669 -17.17605 -16.50128 -16.32911 -16.22238 -15.64035 -15.39522 -14.87587 -14.82855 -14.55121 -14.26274 -13.91836 -13.82065 -13.35935 -13.17270 -13.07551 -12.88743 -12.52029 -12.43860 -12.28303 -12.19424 -11.88012 -11.75954 -11.67161 -11.57837 -11.51696 -11.45976 -11.32981 -11.04326 -10.80263 -10.39775 -10.34953 -10.02010 -9.85485 -9.78687 -9.40305 -9.14704 -8.28634 -7.88849 -7.09537 -4.64845 0.92114 1.90569 2.40565 2.98352 3.10872 3.15452 3.20096 3.41952 3.71463 3.84830 4.10786 4.31259 4.33667 4.44260 4.54361 4.70856 4.89094 4.95318 5.01526 5.12502 5.15706 5.17075 5.34402 5.36839 5.43890 5.60629 5.65427 5.72861 5.79240 5.84283 5.91812 5.99794 6.11842 6.19132 6.44549 6.57334 6.85624 6.87345 7.04327 7.16608 7.18799 7.37688 7.60879 7.76652 8.17373 8.41742 8.60718 9.92394 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.003452 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.176995 B = 8109.386212 C = 8874.481329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.256 3.744 3 C -0.128 4.128 4 C 0.122 3.878 5 N -1.120 6.120 6 S 2.690 3.310 7 O -0.969 6.969 8 O -0.971 6.971 9 C -0.625 4.625 10 C -0.158 4.158 11 C -0.092 4.092 12 C -0.198 4.198 13 C 0.074 3.926 14 C -0.443 4.443 15 H 0.095 0.905 16 C 0.084 3.916 17 N -0.800 5.800 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.243 1.243 22 C -0.101 4.101 23 O -0.368 6.368 24 C 0.015 3.985 25 C 0.017 3.983 26 O -0.373 6.373 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.414 0.586 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.288 0.712 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 -9.767 9.350 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.178 3.822 3 C -0.167 4.167 4 C -0.004 4.004 5 N -0.879 5.879 6 S 2.785 3.215 7 O -0.960 6.960 8 O -0.961 6.961 9 C -0.716 4.716 10 C -0.179 4.179 11 C -0.111 4.111 12 C -0.217 4.217 13 C 0.070 3.930 14 C -0.471 4.471 15 H 0.113 0.887 16 C -0.136 4.136 17 N -0.423 5.423 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.166 1.166 22 C -0.122 4.122 23 O -0.289 6.289 24 C -0.062 4.062 25 C -0.059 4.059 26 O -0.295 6.295 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.832 -9.204 9.878 19.330 hybrid contribution 0.606 -0.713 -0.738 1.192 sum -13.227 -9.918 9.140 18.890 Atomic orbital electron populations 1.22350 0.93525 1.03284 1.03508 1.23339 0.92885 0.90836 0.75148 1.22116 0.95903 0.94417 1.04288 1.21171 0.94253 0.82039 1.02972 1.55535 1.29057 1.14128 1.89148 1.01673 0.72275 0.73205 0.74348 1.93555 1.85052 1.29967 1.87383 1.93521 1.83603 1.74632 1.44340 1.29957 1.18815 1.06288 1.16539 1.20055 1.04650 0.93640 0.99601 1.20688 0.98052 0.98239 0.94160 1.21297 1.06373 0.95068 0.98989 1.17789 0.91703 0.91493 0.92064 1.19523 1.04858 1.17494 1.05260 0.88666 1.26159 1.00159 0.93494 0.93775 1.69676 1.26982 1.36404 1.09273 0.86376 0.78698 0.79215 0.82504 1.19429 1.21311 1.16625 1.20857 1.01772 0.97873 0.91740 1.89295 1.86085 1.21696 1.31781 1.24392 1.01400 0.85075 0.95287 1.24261 0.97281 0.89686 0.94708 1.88934 1.69573 1.41839 1.29107 0.90538 0.91781 0.90512 0.89320 0.89063 0.90962 0.89910 0.75265 0.87123 0.87943 0.87627 0.90181 0.86239 0.90806 0.87173 0.88216 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.19 37.16 0.34 -1.02 16 2 C 0.26 2.64 1.06 -26.73 -0.03 2.61 16 3 C -0.13 -1.34 4.87 -26.73 -0.13 -1.47 16 4 C 0.12 1.60 5.92 -4.04 -0.02 1.57 16 5 N -1.12 -15.64 6.00 -10.61 -0.06 -15.70 16 6 S 2.69 48.95 5.73 -107.50 -0.62 48.34 16 7 O -0.97 -19.87 17.26 -57.17 -0.99 -20.86 16 8 O -0.97 -19.29 16.74 -57.17 -0.96 -20.25 16 9 C -0.62 -13.02 5.93 -39.66 -0.24 -13.26 16 10 C -0.16 -3.21 9.53 -39.29 -0.37 -3.58 16 11 C -0.09 -1.91 10.02 -39.66 -0.40 -2.30 16 12 C -0.20 -4.58 7.18 -38.87 -0.28 -4.86 16 13 C 0.07 1.82 5.11 -106.82 -0.55 1.28 16 14 C -0.44 -11.68 9.57 -37.74 -0.36 -12.04 16 15 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.08 2.14 5.40 -17.34 -0.09 2.05 16 17 N -0.80 -20.70 13.93 55.55 0.77 -19.93 16 18 Si 0.91 20.16 24.52 -169.99 -4.17 15.99 16 19 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 20 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 22 C -0.10 -2.34 9.26 -38.87 -0.36 -2.70 16 23 O -0.37 -3.99 10.34 -59.04 -0.61 -4.60 16 24 C 0.01 0.12 7.91 38.17 0.30 0.42 16 25 C 0.02 0.15 8.07 38.17 0.31 0.46 16 26 O -0.37 -4.25 10.17 -59.04 -0.60 -4.85 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 33 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 34 H 0.41 4.71 8.65 -34.47 -0.30 4.41 16 35 H 0.11 1.99 7.59 -52.49 -0.40 1.59 16 36 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 2.40 4.73 -52.49 -0.25 2.15 16 38 H 0.29 6.71 8.30 -40.82 -0.34 6.38 16 39 H 0.12 2.65 7.60 -52.49 -0.40 2.25 16 40 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -32.16 365.66 -9.54 -41.70 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.94 Total: 7.49 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -1.88 Total: -32.84 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.71 Total: -35.63 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -3.16 Total: -50.55 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.17 Total: 15.99 kcal Atomic # 16 Polarization: 48.95 SS G_CDS: -0.62 Total: 48.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.16 -9.54 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795155131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.629 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds