Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 C 1.53008 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46875 * 304.99602 * 4 3 2 6 6 N 1.46498 * 109.47221 * 64.99837 * 4 3 2 7 7 S 1.65602 * 119.99927 * 215.00141 * 6 4 3 8 8 O 1.42096 * 106.40202 * 311.45699 * 7 6 4 9 9 O 1.42096 * 106.39961 * 178.53926 * 7 6 4 10 10 C 1.76194 * 107.21706 * 64.99983 * 7 6 4 11 11 C 1.38666 * 119.87568 * 269.97456 * 10 7 6 12 12 C 1.38611 * 120.50331 * 180.02562 * 11 10 7 13 13 C 1.37646 * 120.24669 * 0.02562 * 12 11 10 14 14 C 1.40698 * 119.74666 * 0.02562 * 13 12 11 15 15 C 1.41391 * 120.24665 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99840 * 155.25085 * 15 14 13 17 17 C 1.39947 * 119.99794 * 335.25631 * 15 14 13 18 18 N 1.30819 * 119.99909 * 342.23093 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 162.23768 * 17 15 14 20 20 H 1.48508 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47219 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.47311 * 239.99733 * 19 17 15 23 23 C 1.37597 * 119.87737 * 90.00215 * 10 7 6 24 24 C 1.50703 * 109.46987 * 184.99861 * 4 3 2 25 25 O 1.20826 * 119.99709 * 239.99962 * 24 4 3 26 26 O 1.34227 * 120.00161 * 59.99946 * 24 4 3 27 27 C 1.45202 * 116.99948 * 179.97438 * 26 24 4 28 28 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46747 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.47070 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47174 * 239.99741 * 2 1 3 32 32 H 1.09000 * 109.47070 * 119.99948 * 2 1 3 33 33 H 1.08990 * 109.47717 * 59.99965 * 3 2 1 34 34 H 1.08997 * 109.46971 * 299.99430 * 3 2 1 35 35 H 0.97006 * 120.00230 * 34.99901 * 6 4 3 36 36 H 1.07993 * 119.74749 * 0.02562 * 11 10 7 37 37 H 1.07992 * 119.87693 * 179.97438 * 12 11 10 38 38 H 1.07992 * 120.12338 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99812 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.12664 * 0.24721 * 23 10 7 41 41 H 1.09000 * 109.47128 * 300.00120 * 27 26 24 42 42 H 1.08999 * 109.46858 * 60.00424 * 27 26 24 43 43 H 1.09000 * 109.47188 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 7 4.0579 0.8588 -1.2527 7 16 5.4414 -0.0512 -1.2583 8 8 6.4174 0.6981 -0.5476 9 8 5.6245 -0.4948 -2.5958 10 6 5.1220 -1.4919 -0.2956 11 6 5.3786 -1.4830 1.0670 12 6 5.1327 -2.6093 1.8367 13 6 4.6303 -3.7509 1.2543 14 6 4.3671 -3.7718 -0.1277 15 6 3.8505 -4.9385 -0.7367 16 1 3.2857 -4.8639 -1.6542 17 6 4.0710 -6.1901 -0.1505 18 7 5.0191 -6.3380 0.7386 19 14 3.0116 -7.6493 -0.6378 20 1 2.0172 -7.2216 -1.6546 21 1 3.8722 -8.7182 -1.2054 22 1 2.3027 -8.1682 0.5594 23 6 4.6192 -2.6218 -0.8989 24 6 4.0725 2.8578 0.1232 25 8 4.7668 3.3305 -0.7454 26 8 3.7487 3.5933 1.1983 27 6 4.2684 4.9481 1.2509 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 3.5704 1.0054 -2.0785 36 1 5.7732 -0.5919 1.5322 37 1 5.3367 -2.5913 2.8970 38 1 4.4390 -4.6271 1.8559 39 1 5.1722 -7.2055 1.1446 40 1 4.4242 -2.6280 -1.9611 41 1 5.3579 4.9203 1.2324 42 1 3.9046 5.5104 0.3910 43 1 3.9324 5.4307 2.1687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795161287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -154.781071 kcal Electronic energy + Delta-G solvation = -28489.270654 eV Core-core repulsion = 24432.964604 eV Total energy + Delta-G solvation = -4056.306050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56718 -37.71602 -37.22404 -36.61556 -36.15016 -35.31389 -33.88780 -33.19624 -30.12926 -29.84919 -29.47151 -27.53816 -25.54053 -24.66902 -21.97063 -21.30373 -21.13975 -20.87125 -19.32631 -18.09337 -17.78424 -17.15876 -16.84141 -16.28090 -15.93314 -15.79094 -15.18588 -14.98113 -14.76216 -14.41657 -13.85130 -13.81024 -13.49873 -13.38869 -13.12047 -12.73239 -12.63199 -12.30058 -11.97474 -11.93505 -11.72972 -11.58898 -11.54627 -11.44013 -11.39313 -11.23005 -11.11712 -11.08026 -10.91434 -10.85522 -10.74313 -10.62259 -10.59867 -9.86075 -9.74119 -9.39482 -9.34349 -8.09324 -7.75046 -6.96283 -4.57479 0.89887 2.13170 2.18850 2.58450 2.59687 2.98399 3.00908 3.04422 3.44297 3.80243 4.20754 4.37253 4.46776 4.72159 4.78714 4.90716 5.00120 5.08297 5.10440 5.18186 5.32787 5.40499 5.44411 5.50931 5.75162 5.77868 5.82108 6.00335 6.11713 6.15328 6.25394 6.30281 6.42004 6.61552 6.71581 6.77592 6.97695 7.04571 7.16853 7.32861 7.67415 7.73039 7.76374 7.89821 8.36120 8.62915 8.67348 9.99318 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003617 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.626257 B = 7740.098402 C = 8354.146243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.116 4.116 4 C 0.171 3.829 5 H 0.129 0.871 6 N -1.098 6.098 7 S 2.683 3.317 8 O -0.966 6.966 9 O -0.965 6.965 10 C -0.630 4.630 11 C -0.153 4.153 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.094 3.906 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.122 4.122 24 C 0.445 3.555 25 O -0.489 6.489 26 O -0.359 6.359 27 C 0.035 3.965 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.420 0.580 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 12.842 2.955 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.155 4.155 4 C 0.060 3.940 5 H 0.146 0.854 6 N -0.854 5.854 7 S 2.779 3.221 8 O -0.956 6.956 9 O -0.955 6.955 10 C -0.722 4.722 11 C -0.174 4.174 12 C -0.137 4.137 13 C -0.137 4.137 14 C 0.090 3.910 15 C -0.488 4.488 16 H 0.101 0.899 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.143 4.143 24 C 0.284 3.716 25 O -0.374 6.374 26 O -0.275 6.275 27 C -0.059 4.059 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.138 13.070 2.541 15.108 hybrid contribution -0.670 -0.971 -0.093 1.184 sum -7.809 12.099 2.448 14.607 Atomic orbital electron populations 1.21737 0.95603 1.02015 1.01328 1.21562 0.95902 0.94962 1.04137 1.21883 0.90261 0.99488 1.03894 1.20259 0.97097 0.87761 0.88852 0.85360 1.55609 1.48095 1.66856 1.14833 1.01968 0.72369 0.73829 0.73896 1.93537 1.56403 1.70884 1.74791 1.93548 1.84038 1.82162 1.35798 1.29695 1.18379 1.16737 1.07432 1.20076 1.06726 0.98921 0.91723 1.20796 1.00982 0.93921 0.97996 1.21636 1.00192 0.96770 0.95081 1.17671 0.89780 0.91947 0.91601 1.19648 1.30060 0.90304 1.08783 0.89854 1.25942 0.93892 1.00856 0.93672 1.69786 1.23725 1.26190 1.21969 0.86207 0.80555 0.80120 0.79612 1.18205 1.19844 1.19597 1.20740 1.02159 0.93403 0.97999 1.24491 0.78055 0.89447 0.79562 1.90663 1.34212 1.72037 1.40499 1.86494 1.69889 1.27022 1.44068 1.23257 1.00055 0.79587 1.03043 0.92306 0.92895 0.93013 0.90759 0.90726 0.89278 0.90770 0.74593 0.87721 0.88337 0.85786 0.90550 0.87005 0.91754 0.92076 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.42 5.82 -26.73 -0.16 -1.57 16 3 C -0.12 -1.15 4.78 -26.73 -0.13 -1.28 16 4 C 0.17 2.22 2.68 -69.08 -0.18 2.03 16 5 H 0.13 1.65 7.23 -51.93 -0.38 1.28 16 6 N -1.10 -15.99 4.41 -5.88 -0.03 -16.01 16 7 S 2.68 51.29 5.65 -107.50 -0.61 50.69 16 8 O -0.97 -20.64 17.03 -57.18 -0.97 -21.62 16 9 O -0.96 -20.77 17.26 -57.18 -0.99 -21.76 16 10 C -0.63 -13.17 5.81 -39.66 -0.23 -13.40 16 11 C -0.15 -3.14 8.91 -39.29 -0.35 -3.49 16 12 C -0.12 -2.49 10.02 -39.66 -0.40 -2.89 16 13 C -0.12 -2.77 8.70 -38.87 -0.34 -3.11 16 14 C 0.09 2.31 5.57 -106.82 -0.60 1.71 16 15 C -0.46 -11.34 9.05 -37.74 -0.34 -11.68 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 17 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.79 -19.25 10.97 55.55 0.61 -18.64 16 19 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.12 -2.79 9.26 -38.87 -0.36 -3.15 16 24 C 0.45 6.36 7.32 36.01 0.26 6.62 16 25 O -0.49 -8.42 16.18 -18.75 -0.30 -8.72 16 26 O -0.36 -4.31 10.37 -39.25 -0.41 -4.72 16 27 C 0.03 0.32 10.56 101.05 1.07 1.39 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.76 7.99 -51.93 -0.42 0.34 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.42 5.08 8.84 -34.47 -0.30 4.78 16 36 H 0.10 1.95 7.60 -52.49 -0.40 1.55 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.01 6.18 -52.49 -0.32 2.68 16 39 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 40 H 0.11 2.48 7.60 -52.49 -0.40 2.08 16 41 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 42 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -31.90 378.88 -9.46 -41.36 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.97 Total: 9.40 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -1.47 Total: -28.20 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.58 Total: -34.66 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -2.67 Total: -56.82 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 16 Polarization: 51.29 SS G_CDS: -0.61 Total: 50.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.90 -9.46 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795161287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.417 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds