Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47214 * 2 1 4 4 C 1.53008 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46875 * 304.99602 * 4 3 2 6 6 N 1.46498 * 109.47221 * 64.99837 * 4 3 2 7 7 S 1.65602 * 119.99927 * 215.00141 * 6 4 3 8 8 O 1.42096 * 106.40202 * 311.45699 * 7 6 4 9 9 O 1.42096 * 106.39961 * 178.53926 * 7 6 4 10 10 C 1.76194 * 107.21706 * 64.99983 * 7 6 4 11 11 C 1.38666 * 119.87568 * 269.97456 * 10 7 6 12 12 C 1.38611 * 120.50331 * 180.02562 * 11 10 7 13 13 C 1.37646 * 120.24669 * 0.02562 * 12 11 10 14 14 C 1.40698 * 119.74666 * 0.02562 * 13 12 11 15 15 C 1.41391 * 120.24665 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99840 * 155.25085 * 15 14 13 17 17 C 1.39947 * 119.99794 * 335.25631 * 15 14 13 18 18 N 1.30819 * 119.99909 * 342.23093 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 162.23768 * 17 15 14 20 20 H 1.48508 * 109.47269 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47219 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.47311 * 239.99733 * 19 17 15 23 23 C 1.37597 * 119.87737 * 90.00215 * 10 7 6 24 24 C 1.50703 * 109.46987 * 184.99861 * 4 3 2 25 25 O 1.20826 * 119.99709 * 239.99962 * 24 4 3 26 26 O 1.34227 * 120.00161 * 59.99946 * 24 4 3 27 27 C 1.45202 * 116.99948 * 179.97438 * 26 24 4 28 28 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46747 * 300.00309 * 1 2 3 30 30 H 1.09000 * 109.47070 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47174 * 239.99741 * 2 1 3 32 32 H 1.09000 * 109.47070 * 119.99948 * 2 1 3 33 33 H 1.08990 * 109.47717 * 59.99965 * 3 2 1 34 34 H 1.08997 * 109.46971 * 299.99430 * 3 2 1 35 35 H 0.97006 * 120.00230 * 34.99901 * 6 4 3 36 36 H 1.07993 * 119.74749 * 0.02562 * 11 10 7 37 37 H 1.07992 * 119.87693 * 179.97438 * 12 11 10 38 38 H 1.07992 * 120.12338 * 180.02562 * 13 12 11 39 39 H 0.97004 * 119.99812 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.12664 * 0.24721 * 23 10 7 41 41 H 1.09000 * 109.47128 * 300.00120 * 27 26 24 42 42 H 1.08999 * 109.46858 * 60.00424 * 27 26 24 43 43 H 1.09000 * 109.47188 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8410 6 7 4.0579 0.8588 -1.2527 7 16 5.4414 -0.0512 -1.2583 8 8 6.4174 0.6981 -0.5476 9 8 5.6245 -0.4948 -2.5958 10 6 5.1220 -1.4919 -0.2956 11 6 5.3786 -1.4830 1.0670 12 6 5.1327 -2.6093 1.8367 13 6 4.6303 -3.7509 1.2543 14 6 4.3671 -3.7718 -0.1277 15 6 3.8505 -4.9385 -0.7367 16 1 3.2857 -4.8639 -1.6542 17 6 4.0710 -6.1901 -0.1505 18 7 5.0191 -6.3380 0.7386 19 14 3.0116 -7.6493 -0.6378 20 1 2.0172 -7.2216 -1.6546 21 1 3.8722 -8.7182 -1.2054 22 1 2.3027 -8.1682 0.5594 23 6 4.6192 -2.6218 -0.8989 24 6 4.0725 2.8578 0.1232 25 8 4.7668 3.3305 -0.7454 26 8 3.7487 3.5933 1.1983 27 6 4.2684 4.9481 1.2509 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9562 -0.8900 35 1 3.5704 1.0054 -2.0785 36 1 5.7732 -0.5919 1.5322 37 1 5.3367 -2.5913 2.8970 38 1 4.4390 -4.6271 1.8559 39 1 5.1722 -7.2055 1.1446 40 1 4.4242 -2.6280 -1.9611 41 1 5.3579 4.9203 1.2324 42 1 3.9046 5.5104 0.3910 43 1 3.9324 5.4307 2.1687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795161287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -175.250018 kcal Electronic energy + Delta-G solvation = -28490.158254 eV Core-core repulsion = 24432.964604 eV Total energy + Delta-G solvation = -4057.193650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63257 -39.45427 -38.44635 -38.06595 -37.22405 -36.97503 -35.65416 -34.20748 -31.90452 -31.59379 -30.47829 -28.33071 -27.33648 -25.58558 -23.69500 -22.81158 -22.20855 -21.97370 -20.80945 -19.73124 -18.98345 -18.39837 -18.15227 -17.65383 -17.30977 -16.98939 -16.80778 -16.51367 -16.10440 -15.66249 -15.23070 -15.05438 -14.74354 -14.72480 -14.30400 -14.03477 -13.80542 -13.70250 -13.30496 -13.25136 -13.14560 -13.09629 -13.07097 -12.90569 -12.84709 -12.66215 -12.58358 -12.25138 -12.16723 -12.07233 -11.85250 -11.76759 -11.52584 -11.45276 -11.32270 -11.13450 -10.67570 -9.84438 -9.53959 -8.71744 -6.42944 -0.64371 0.39406 0.85818 1.09803 1.39698 1.45861 1.54465 1.59875 2.05564 2.19597 2.55089 2.74857 3.38882 3.44971 3.54743 3.76854 3.84492 4.12927 4.30573 4.32816 4.35213 4.36585 4.43354 4.46110 4.68679 4.73945 4.87110 4.90089 4.92951 4.96185 5.03908 5.06977 5.22298 5.31226 5.38449 5.41270 5.41792 5.57077 5.57412 5.88930 5.91976 5.96005 6.12336 6.54904 6.67456 6.82100 6.86490 8.26471 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.003617 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.626257 B = 7740.098402 C = 8354.146243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.105 4.105 4 C 0.162 3.838 5 H 0.131 0.869 6 N -1.085 6.085 7 S 2.709 3.291 8 O -0.986 6.986 9 O -0.992 6.992 10 C -0.631 4.631 11 C -0.148 4.148 12 C -0.117 4.117 13 C -0.135 4.135 14 C 0.068 3.932 15 C -0.495 4.495 16 H 0.081 0.919 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.261 1.261 23 C -0.138 4.138 24 C 0.448 3.552 25 O -0.524 6.524 26 O -0.354 6.354 27 C 0.026 3.974 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.432 0.568 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.291 0.709 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 14.102 3.881 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.144 4.144 4 C 0.053 3.947 5 H 0.148 0.852 6 N -0.846 5.846 7 S 2.803 3.197 8 O -0.976 6.976 9 O -0.982 6.982 10 C -0.721 4.721 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.155 4.155 14 C 0.064 3.936 15 C -0.524 4.524 16 H 0.099 0.901 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.803 3.197 20 H -0.180 1.180 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.159 4.159 24 C 0.289 3.711 25 O -0.412 6.412 26 O -0.269 6.269 27 C -0.068 4.068 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.270 0.730 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.516 14.331 3.490 17.032 hybrid contribution -0.216 -1.168 -0.309 1.227 sum -8.731 13.163 3.181 16.113 Atomic orbital electron populations 1.21714 0.94230 1.01796 1.02668 1.21556 0.97150 0.95450 1.02678 1.21884 0.87656 0.99006 1.05857 1.20575 0.99133 0.87254 0.87774 0.85174 1.55159 1.47055 1.65945 1.16419 1.01080 0.72746 0.73173 0.72663 1.93510 1.58012 1.70915 1.75125 1.93506 1.84984 1.82714 1.37012 1.29976 1.17079 1.17084 1.07974 1.20426 1.05390 0.99501 0.91580 1.21107 0.99751 0.93138 0.99592 1.21638 1.01630 0.97434 0.94832 1.17984 0.90460 0.92691 0.92417 1.19891 1.31496 0.91443 1.09549 0.90127 1.26738 0.94599 1.03114 0.93387 1.69823 1.24820 1.27341 1.22947 0.85152 0.78688 0.76422 0.79475 1.18020 1.19466 1.18556 1.20777 1.03230 0.93903 0.97986 1.24609 0.77258 0.89776 0.79502 1.90656 1.35869 1.72876 1.41832 1.86484 1.69516 1.28206 1.42740 1.23593 0.99637 0.78272 1.05251 0.93361 0.91399 0.91823 0.92425 0.92131 0.86960 0.89080 0.73033 0.85291 0.85420 0.86927 0.89788 0.87281 0.92755 0.91568 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.13 -2.72 5.82 30.59 0.18 -2.54 16 3 C -0.11 -1.82 4.78 30.59 0.15 -1.68 16 4 C 0.16 3.93 2.68 44.25 0.12 4.05 16 5 H 0.13 3.12 7.23 -2.39 -0.02 3.10 16 6 N -1.09 -30.57 4.41 -172.51 -0.76 -31.33 16 7 S 2.71 102.67 5.65 -56.49 -0.32 102.35 16 8 O -0.99 -41.35 17.03 -128.00 -2.18 -43.52 16 9 O -0.99 -42.97 17.26 -128.00 -2.21 -45.18 16 10 C -0.63 -26.35 5.81 22.22 0.13 -26.22 16 11 C -0.15 -5.93 8.91 22.46 0.20 -5.73 16 12 C -0.12 -4.88 10.02 22.22 0.22 -4.65 16 13 C -0.14 -6.54 8.70 22.73 0.20 -6.34 16 14 C 0.07 3.44 5.57 -21.29 -0.12 3.32 16 15 C -0.49 -25.27 9.05 23.46 0.21 -25.06 16 16 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 17 C 0.04 1.77 5.14 85.26 0.44 2.21 16 18 N -0.82 -40.83 10.97 21.83 0.24 -40.59 16 19 Si 0.98 36.23 29.59 68.60 2.03 38.26 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 23 C -0.14 -6.48 9.26 22.73 0.21 -6.27 16 24 C 0.45 11.94 7.32 71.24 0.52 12.46 16 25 O -0.52 -17.44 16.18 21.96 0.36 -17.08 16 26 O -0.35 -7.59 10.37 -51.38 -0.53 -8.12 16 27 C 0.03 0.41 10.56 113.37 1.20 1.61 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.38 7.75 -2.39 -0.02 1.36 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.50 7.99 -2.39 -0.02 1.48 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.43 10.04 8.84 -96.74 -0.85 9.18 16 36 H 0.13 4.52 7.60 -2.91 -0.02 4.50 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.11 5.62 6.18 -2.91 -0.02 5.61 16 39 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 40 H 0.11 5.04 7.60 -2.91 -0.02 5.02 16 41 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 42 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 43 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.64 378.88 1.17 -68.47 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.18 Total: 33.40 kcal Atomic # 6 Polarization: -61.02 SS G_CDS: 4.37 Total: -56.66 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -0.52 Total: -71.92 kcal Atomic # 8 Polarization: -109.34 SS G_CDS: -4.57 Total: -113.91 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 16 Polarization: 102.67 SS G_CDS: -0.32 Total: 102.35 kcal Total: -69.64 1.17 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795161287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.776 kcal (2) G-P(sol) polarization free energy of solvation -69.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds