Wall clock time and date at job start Sat Apr 11 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47490 * 185.01864 * 3 2 1 5 5 H 1.09004 * 109.46880 * 55.06888 * 4 3 2 6 6 N 1.46506 * 109.46739 * 295.07473 * 4 3 2 7 7 S 1.65596 * 119.99936 * 125.62207 * 6 4 3 8 8 O 1.42105 * 106.40241 * 178.17397 * 7 6 4 9 9 O 1.42105 * 106.40322 * 311.09035 * 7 6 4 10 10 C 1.76207 * 107.22124 * 64.63267 * 7 6 4 11 11 C 1.38654 * 119.87117 * 269.72780 * 10 7 6 12 12 C 1.38618 * 120.49702 * 179.71891 * 11 10 7 13 13 C 1.37641 * 120.24950 * 0.55550 * 12 11 10 14 14 C 1.40701 * 119.73920 * 359.72390 * 13 12 11 15 15 C 1.41399 * 120.23880 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99979 * 153.07207 * 15 14 13 17 17 C 1.39941 * 120.00078 * 333.06945 * 15 14 13 18 18 N 1.30828 * 119.99978 * 158.35848 * 17 15 14 19 19 Si 1.86802 * 120.00070 * 338.35671 * 17 15 14 20 20 H 1.48503 * 109.46972 * 94.74298 * 19 17 15 21 21 H 1.48496 * 109.47061 * 214.74053 * 19 17 15 22 22 H 1.48495 * 109.47222 * 334.74482 * 19 17 15 23 23 C 1.37592 * 119.87714 * 89.99904 * 10 7 6 24 24 C 1.50698 * 109.47567 * 175.07224 * 4 3 2 25 25 O 1.20822 * 120.00174 * 120.00050 * 24 4 3 26 26 O 1.34231 * 119.99700 * 300.00013 * 24 4 3 27 27 C 1.45205 * 116.99692 * 179.97438 * 26 24 4 28 28 H 1.08995 * 109.47167 * 59.99996 * 1 2 3 29 29 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46889 * 299.99948 * 1 2 3 31 31 H 1.09001 * 109.46626 * 239.99595 * 2 1 3 32 32 H 1.09007 * 109.47113 * 120.00377 * 2 1 3 33 33 H 1.09004 * 109.47095 * 65.01520 * 3 2 1 34 34 H 1.09001 * 109.47458 * 305.01596 * 3 2 1 35 35 H 0.96997 * 120.00122 * 305.60879 * 6 4 3 36 36 H 1.08001 * 119.75240 * 359.97438 * 11 10 7 37 37 H 1.08000 * 119.87432 * 180.25118 * 12 11 10 38 38 H 1.07994 * 120.12913 * 179.74385 * 13 12 11 39 39 H 0.97004 * 119.99878 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.12381 * 359.97438 * 23 10 7 41 41 H 1.08996 * 109.47026 * 300.00120 * 27 26 24 42 42 H 1.08996 * 109.47058 * 60.00015 * 27 26 24 43 43 H 1.08994 * 109.47048 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4443 -0.1262 5 1 3.8567 0.8811 -1.0126 6 7 4.1539 0.8232 1.0628 7 16 5.2090 -0.4425 0.8991 8 8 5.6293 -0.7869 2.2122 9 8 4.5927 -1.3667 0.0129 10 6 6.6348 0.1713 0.0653 11 6 6.6973 0.1278 -1.3192 12 6 7.8101 0.6124 -1.9887 13 6 8.8716 1.1324 -1.2836 14 6 8.8215 1.1763 0.1219 15 6 9.9058 1.7088 0.8568 16 1 9.7363 2.1438 1.8307 17 6 11.1986 1.6721 0.3223 18 7 12.1109 2.5019 0.7592 19 14 11.6218 0.4384 -1.0150 20 1 11.4660 1.0783 -2.3460 21 1 13.0258 -0.0142 -0.8446 22 1 10.7099 -0.7295 -0.9176 23 6 7.6842 0.6868 0.7907 24 6 4.0571 2.8634 -0.2479 25 8 4.8217 3.3102 0.5741 26 8 3.6463 3.6309 -1.2696 27 6 4.1608 4.9877 -1.3232 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7519 1.9297 0.9315 34 1 1.6052 1.9816 -0.8416 35 1 3.9261 1.1536 1.9459 36 1 5.8710 -0.2829 -1.8804 37 1 7.8464 0.5773 -3.0675 38 1 9.7394 1.5057 -1.8070 39 1 13.0071 2.4762 0.3890 40 1 7.6350 0.7160 1.8692 41 1 3.8695 5.5227 -0.4193 42 1 5.2480 4.9614 -1.3953 43 1 3.7506 5.4976 -2.1948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795161288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:02 Heat of formation + Delta-G solvation = -151.805326 kcal Electronic energy + Delta-G solvation = -28639.129252 eV Core-core repulsion = 24582.952240 eV Total energy + Delta-G solvation = -4056.177012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53641 -37.91680 -37.31743 -36.74224 -36.12004 -35.47743 -33.82859 -33.33844 -30.74738 -30.16493 -29.52879 -27.51455 -25.42589 -24.72585 -22.41959 -21.42387 -21.07304 -20.83186 -19.52036 -18.27883 -17.60378 -17.14201 -17.06430 -16.34063 -16.25065 -15.76556 -15.36972 -15.08893 -14.85175 -14.54478 -13.98143 -13.82669 -13.75717 -13.20669 -13.15618 -12.88728 -12.80817 -12.27192 -12.24633 -11.98626 -11.88087 -11.83167 -11.76614 -11.69582 -11.52252 -11.44107 -11.27283 -11.09293 -10.81437 -10.78579 -10.74771 -10.72467 -10.34989 -10.05354 -9.80220 -9.54418 -9.23027 -8.29503 -7.90755 -7.13602 -4.64548 0.77765 1.89814 2.21904 2.41511 2.56936 2.97362 3.09863 3.18696 3.33351 3.83054 4.03743 4.25535 4.40794 4.60245 4.69742 4.81481 4.98260 5.03314 5.09199 5.15350 5.19766 5.31158 5.35922 5.51330 5.65237 5.67717 5.69562 5.80385 5.94817 5.98079 6.10022 6.20636 6.23748 6.36202 6.45950 6.55778 6.83855 6.92713 7.07602 7.19186 7.38514 7.61449 7.76355 7.77205 8.16407 8.42598 8.59261 9.87803 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.004098 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.544921 B = 6831.289022 C = 7751.987095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.120 4.120 4 C 0.171 3.829 5 H 0.131 0.869 6 N -1.097 6.097 7 S 2.686 3.314 8 O -0.961 6.961 9 O -0.963 6.963 10 C -0.626 4.626 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.205 4.205 14 C 0.075 3.925 15 C -0.439 4.439 16 H 0.096 0.904 17 C 0.084 3.916 18 N -0.793 5.793 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.244 1.244 23 C -0.094 4.094 24 C 0.443 3.557 25 O -0.480 6.480 26 O -0.360 6.360 27 C 0.035 3.965 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.421 0.579 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.288 0.712 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 1.131 -4.834 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.159 4.159 4 C 0.060 3.940 5 H 0.148 0.852 6 N -0.854 5.854 7 S 2.781 3.219 8 O -0.952 6.952 9 O -0.953 6.953 10 C -0.717 4.717 11 C -0.191 4.191 12 C -0.107 4.107 13 C -0.224 4.224 14 C 0.071 3.929 15 C -0.467 4.467 16 H 0.114 0.886 17 C -0.136 4.136 18 N -0.416 5.416 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.167 1.167 23 C -0.115 4.115 24 C 0.281 3.719 25 O -0.364 6.364 26 O -0.276 6.276 27 C -0.059 4.059 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.397 0.511 -4.380 17.947 hybrid contribution 1.115 0.654 -0.493 1.383 sum -16.282 1.165 -4.873 17.036 Atomic orbital electron populations 1.21761 0.95593 1.01804 1.01661 1.21554 0.95792 0.95371 1.03715 1.21931 0.90901 0.99144 1.03929 1.20269 0.95396 0.87946 0.90350 0.85186 1.55614 1.62408 1.53939 1.13404 1.01928 0.73470 0.72791 0.73729 1.93571 1.82095 1.81504 1.38008 1.93544 1.76059 1.58762 1.66951 1.29857 1.17780 1.18716 1.05366 1.20012 1.00069 1.07625 0.91439 1.20668 0.94069 0.98044 0.97959 1.21279 0.99052 1.07609 0.94483 1.17761 0.93251 0.90246 0.91667 1.19556 0.90469 1.31747 1.04889 0.88635 1.26201 0.96185 0.94813 0.96439 1.69712 1.04899 1.29176 1.37826 0.86369 0.77714 0.82486 0.80038 1.19366 1.21279 1.16677 1.20811 0.93974 0.98459 0.98210 1.24259 0.79068 0.89284 0.79249 1.90734 1.31446 1.73446 1.40777 1.86463 1.67119 1.26031 1.47976 1.23274 1.00549 0.79184 1.02904 0.92644 0.92542 0.92886 0.90596 0.91468 0.90696 0.89217 0.74402 0.87154 0.87953 0.87606 0.90102 0.86325 0.92019 0.91474 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.19 5.76 -26.74 -0.15 -1.35 16 3 C -0.12 -1.09 4.85 -26.74 -0.13 -1.22 16 4 C 0.17 2.11 2.82 -69.08 -0.19 1.91 16 5 H 0.13 1.55 7.59 -51.93 -0.39 1.15 16 6 N -1.10 -15.20 4.41 -5.88 -0.03 -15.22 16 7 S 2.69 47.64 5.62 -107.50 -0.60 47.04 16 8 O -0.96 -19.56 17.27 -57.17 -0.99 -20.55 16 9 O -0.96 -17.41 16.77 -57.17 -0.96 -18.36 16 10 C -0.63 -13.20 5.93 -39.66 -0.24 -13.44 16 11 C -0.17 -3.46 9.53 -39.29 -0.37 -3.83 16 12 C -0.09 -1.86 10.02 -39.66 -0.40 -2.26 16 13 C -0.20 -4.85 7.32 -38.87 -0.28 -5.14 16 14 C 0.07 1.91 5.15 -106.82 -0.55 1.35 16 15 C -0.44 -11.80 9.56 -37.74 -0.36 -12.16 16 16 H 0.10 2.68 8.06 -52.49 -0.42 2.25 16 17 C 0.08 2.17 5.37 -17.34 -0.09 2.08 16 18 N -0.79 -20.64 13.93 55.55 0.77 -19.86 16 19 Si 0.91 20.28 24.57 -169.99 -4.18 16.11 16 20 H -0.27 -5.71 6.61 56.52 0.37 -5.34 16 21 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.24 -5.63 6.99 56.52 0.40 -5.23 16 23 C -0.09 -2.23 9.26 -38.88 -0.36 -2.59 16 24 C 0.44 6.33 7.32 36.00 0.26 6.59 16 25 O -0.48 -8.52 16.18 -18.75 -0.30 -8.82 16 26 O -0.36 -4.46 10.38 -39.26 -0.41 -4.87 16 27 C 0.03 0.36 10.56 101.05 1.07 1.43 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.69 7.89 -51.92 -0.41 0.28 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 35 H 0.42 5.03 8.96 -34.47 -0.31 4.72 16 36 H 0.11 1.92 7.59 -52.49 -0.40 1.53 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.11 2.46 4.57 -52.49 -0.24 2.22 16 39 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 40 H 0.12 2.76 7.60 -52.49 -0.40 2.36 16 41 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 42 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -32.27 374.95 -8.44 -40.71 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.96 Total: 7.56 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -1.44 Total: -29.38 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.75 Total: -35.09 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.66 Total: -52.61 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.18 Total: 16.11 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.60 Total: 47.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.27 -8.44 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795161288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.096 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds