Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35015 * 119.56143 * 2 1 4 4 C 1.40925 * 119.81071 * 179.97438 * 3 2 1 5 5 O 1.35448 * 120.51375 * 179.97438 * 4 3 2 6 6 C 1.38253 * 118.97535 * 0.02562 * 4 3 2 7 7 C 1.39979 * 119.12346 * 359.97438 * 6 4 3 8 8 O 1.22122 * 119.92898 * 179.97438 * 7 6 4 9 9 N 1.34597 * 120.14221 * 359.73167 * 7 6 4 10 10 C 1.46496 * 119.47095 * 180.26778 * 9 7 6 11 11 C 1.53003 * 109.47151 * 270.28195 * 10 9 7 12 12 C 1.50695 * 109.47268 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00017 * 359.97438 * 12 11 10 14 14 O 1.34225 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.45205 * 117.00296 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47087 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46874 * 179.97438 * 16 15 14 18 18 S 1.81002 * 109.47216 * 180.02562 * 17 16 15 19 19 C 1.76194 * 100.00000 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00306 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00131 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00212 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99706 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47287 * 89.99854 * 23 21 19 25 25 H 1.48500 * 109.47093 * 210.00097 * 23 21 19 26 26 H 1.48503 * 109.47443 * 329.99829 * 23 21 19 27 27 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47318 * 119.99375 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00006 * 1 2 3 30 30 H 1.08005 * 120.10049 * 0.02642 * 3 2 1 31 31 H 0.96693 * 114.00119 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.43900 * 179.97438 * 6 4 3 33 33 H 1.09005 * 109.46846 * 30.27416 * 10 9 7 34 34 H 1.08996 * 109.47546 * 150.27780 * 10 9 7 35 35 H 1.08999 * 109.46614 * 299.99835 * 11 10 9 36 36 H 1.08996 * 109.47234 * 59.99394 * 11 10 9 37 37 H 1.08996 * 109.47154 * 300.00155 * 15 14 12 38 38 H 1.08995 * 109.46630 * 60.00081 * 15 14 12 39 39 H 1.08996 * 109.47301 * 300.00127 * 16 15 14 40 40 H 1.09004 * 109.46999 * 60.00552 * 16 15 14 41 41 H 1.08996 * 109.47302 * 300.00178 * 17 16 15 42 42 H 1.09004 * 109.46815 * 60.00491 * 17 16 15 43 43 H 0.97006 * 120.00125 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 6 3.5824 1.1805 0.0005 5 8 4.2651 2.3504 0.0000 6 6 4.2574 -0.0260 0.0005 7 6 3.5229 -1.2176 0.0005 8 8 4.1041 -2.2916 0.0000 9 7 2.1774 -1.1821 0.0060 10 6 1.4233 -2.4381 0.0119 11 6 1.1609 -2.8822 -1.4286 12 6 0.3858 -4.1745 -1.4226 13 8 0.0755 -4.6880 -0.3738 14 8 0.0401 -4.7552 -2.5823 15 6 -0.7052 -5.9987 -2.5006 16 6 -1.0072 -6.5060 -3.9121 17 6 -1.7920 -7.8165 -3.8259 18 16 -2.1486 -8.4172 -5.4957 19 6 -3.0327 -9.8912 -5.1083 20 1 -3.1997 -10.1656 -4.0771 21 6 -3.5156 -10.6993 -6.1283 22 7 -4.1756 -11.8007 -5.8389 23 14 -3.2287 -10.2236 -7.9118 24 1 -1.9515 -10.8169 -8.3831 25 1 -4.3477 -10.7311 -8.7456 26 1 -3.1587 -8.7445 -8.0246 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6276 2.1065 0.0004 31 1 5.2262 2.2449 0.0009 32 1 5.3371 -0.0489 0.0005 33 1 1.9994 -3.2053 0.5293 34 1 0.4732 -2.2892 0.5249 35 1 0.5850 -2.1150 -1.9461 36 1 2.1110 -3.0311 -1.9417 37 1 -0.1142 -6.7420 -1.9656 38 1 -1.6409 -5.8270 -1.9686 39 1 -1.5984 -5.7625 -4.4467 40 1 -0.0716 -6.6776 -4.4444 41 1 -1.2004 -8.5598 -3.2914 42 1 -2.7276 -7.6454 -3.2934 43 1 -4.5127 -12.3656 -6.5518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805486641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -151.651991 kcal Electronic energy + Delta-G solvation = -25725.473305 eV Core-core repulsion = 21669.302943 eV Total energy + Delta-G solvation = -4056.170363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09086 -40.63816 -39.08182 -37.56391 -36.99622 -34.63735 -33.68129 -32.47858 -32.18694 -31.29774 -28.05211 -27.07326 -25.76585 -25.23310 -23.28391 -22.78237 -21.52452 -21.02436 -19.23226 -18.43561 -17.90742 -17.51748 -17.19035 -16.97814 -16.75268 -16.02781 -15.95867 -15.31763 -15.03268 -14.83419 -14.63795 -14.32757 -14.21171 -14.16661 -14.03685 -13.77485 -13.33062 -13.15496 -12.87922 -12.83321 -12.73337 -12.48116 -12.30026 -11.74726 -11.59938 -11.57146 -11.28021 -11.13242 -11.01856 -10.86651 -10.43052 -10.42384 -10.29086 -9.85486 -9.79309 -9.04573 -8.64264 -8.47699 -7.00838 -6.32009 -4.05663 0.29156 1.38985 1.90049 1.93429 2.50899 2.97785 2.99044 3.14586 3.27615 3.41980 3.52712 3.79556 4.08631 4.13033 4.27739 4.39924 4.46870 4.50510 4.55282 4.64233 4.70459 4.76369 4.87759 4.97932 5.05169 5.06951 5.08797 5.15840 5.19720 5.32938 5.33890 5.47309 5.57920 5.62999 5.68641 5.89164 5.99617 6.28433 6.28958 6.51735 6.61830 6.75238 7.48531 7.65019 7.91466 8.40715 9.13304 10.77342 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.001527 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.611281 B =18338.165896 C =18403.522722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.197 3.803 3 C -0.245 4.245 4 C 0.244 3.756 5 O -0.466 6.466 6 C -0.369 4.369 7 C 0.534 3.466 8 O -0.549 6.549 9 N -0.502 5.502 10 C 0.099 3.901 11 C -0.131 4.131 12 C 0.469 3.531 13 O -0.507 6.507 14 O -0.353 6.353 15 C 0.072 3.928 16 C -0.101 4.101 17 C -0.085 4.085 18 S -0.206 6.206 19 C -0.506 4.506 20 H 0.089 0.911 21 C 0.093 3.907 22 N -0.880 5.880 23 Si 0.861 3.139 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.238 1.238 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.409 0.591 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.852 31.616 12.929 36.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 C -0.269 4.269 4 C 0.192 3.808 5 O -0.267 6.267 6 C -0.392 4.392 7 C 0.337 3.663 8 O -0.432 6.432 9 N -0.215 5.215 10 C -0.022 4.022 11 C -0.170 4.170 12 C 0.311 3.689 13 O -0.396 6.396 14 O -0.270 6.270 15 C -0.002 4.002 16 C -0.140 4.140 17 C -0.233 4.233 18 S 0.022 5.978 19 C -0.653 4.653 20 H 0.107 0.893 21 C -0.116 4.116 22 N -0.516 5.516 23 Si 0.686 3.314 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.162 1.162 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.263 0.737 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.730 31.256 12.150 35.869 hybrid contribution 0.330 -0.809 0.424 0.971 sum 13.060 30.447 12.574 35.436 Atomic orbital electron populations 1.21221 0.87404 1.05802 1.04474 1.20352 0.95263 0.84697 0.90890 1.19807 0.91082 0.97856 1.18151 1.19267 0.91615 0.84406 0.85545 1.84801 1.25221 1.28604 1.88110 1.22225 1.01260 0.90551 1.25148 1.16530 0.80013 0.91003 0.78705 1.91010 1.67618 1.31261 1.53298 1.45583 1.08330 1.06648 1.60983 1.21736 0.98360 0.85737 0.96398 1.21638 1.02488 0.93664 0.99164 1.23130 0.77398 0.86149 0.82203 1.90703 1.52008 1.64153 1.32708 1.86463 1.67453 1.39032 1.34021 1.23278 0.95373 0.82031 0.99564 1.21336 1.01728 0.96806 0.94123 1.22948 1.01823 0.97490 1.01039 1.84169 1.73781 1.31757 1.08091 1.22120 1.39849 1.05889 0.97473 0.89301 1.24786 0.93487 0.93884 0.99418 1.69933 1.35412 1.12629 1.33657 0.86675 0.78756 0.81649 0.84293 1.19310 1.20016 1.16166 0.88492 0.89197 0.89028 0.82812 0.73740 0.83198 0.86804 0.87689 0.87176 0.86577 0.90808 0.90832 0.90229 0.90215 0.90973 0.90951 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.25 8.72 36.01 0.31 0.06 16 2 C 0.20 0.99 6.65 -81.93 -0.54 0.44 16 3 C -0.25 -1.24 9.57 -39.71 -0.38 -1.62 16 4 C 0.24 1.47 6.95 -38.56 -0.27 1.21 16 5 O -0.47 -1.94 13.58 -18.04 -0.24 -2.19 16 6 C -0.37 -2.93 9.71 -38.92 -0.38 -3.31 16 7 C 0.53 5.63 7.38 -15.69 -0.12 5.52 16 8 O -0.55 -8.00 16.62 4.81 0.08 -7.92 16 9 N -0.50 -3.84 2.59 -115.40 -0.30 -4.14 16 10 C 0.10 0.76 4.15 -4.04 -0.02 0.74 16 11 C -0.13 -1.00 6.12 -27.88 -0.17 -1.17 16 12 C 0.47 5.21 7.96 36.00 0.29 5.50 16 13 O -0.51 -6.87 15.73 -18.75 -0.29 -7.16 16 14 O -0.35 -4.37 10.22 -39.24 -0.40 -4.77 16 15 C 0.07 0.96 5.47 37.16 0.20 1.16 16 16 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 17 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 18 S -0.21 -4.92 19.41 -107.50 -2.09 -7.00 16 19 C -0.51 -14.53 10.04 30.94 0.31 -14.22 16 20 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 21 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 22 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 23 Si 0.86 21.28 27.74 -169.99 -4.71 16.57 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.24 -5.73 6.74 56.52 0.38 -5.34 16 27 H 0.10 0.02 7.81 -51.93 -0.41 -0.38 16 28 H 0.09 0.13 7.11 -51.93 -0.37 -0.24 16 29 H 0.09 0.14 7.34 -51.93 -0.38 -0.24 16 30 H 0.15 0.47 7.88 -52.48 -0.41 0.06 16 31 H 0.41 -0.13 8.74 45.56 0.40 0.27 16 32 H 0.15 0.99 8.00 -52.49 -0.42 0.57 16 33 H 0.11 1.14 7.34 -51.93 -0.38 0.76 16 34 H 0.10 0.59 6.31 -51.93 -0.33 0.26 16 35 H 0.11 0.55 7.16 -51.93 -0.37 0.18 16 36 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 42 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -37.26 381.31 -7.44 -44.70 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.21 Total: -1.96 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.79 Total: -6.15 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.48 Total: -29.86 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.86 Total: -22.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.09 Total: -7.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.26 -7.44 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805486641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.953 kcal (2) G-P(sol) polarization free energy of solvation -37.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds