Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35015 * 119.56143 * 2 1 4 4 C 1.40925 * 119.81071 * 179.97438 * 3 2 1 5 5 O 1.35448 * 120.51375 * 179.97438 * 4 3 2 6 6 C 1.38253 * 118.97535 * 0.02562 * 4 3 2 7 7 C 1.39979 * 119.12346 * 359.97438 * 6 4 3 8 8 O 1.22122 * 119.92898 * 179.97438 * 7 6 4 9 9 N 1.34597 * 120.14221 * 359.73167 * 7 6 4 10 10 C 1.46496 * 119.47095 * 180.26778 * 9 7 6 11 11 C 1.53003 * 109.47151 * 270.28195 * 10 9 7 12 12 C 1.50695 * 109.47268 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00017 * 359.97438 * 12 11 10 14 14 O 1.34225 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.45205 * 117.00296 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47087 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46874 * 179.97438 * 16 15 14 18 18 S 1.81002 * 109.47216 * 180.02562 * 17 16 15 19 19 C 1.76194 * 100.00000 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00306 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00131 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00212 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99706 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47287 * 89.99854 * 23 21 19 25 25 H 1.48500 * 109.47093 * 210.00097 * 23 21 19 26 26 H 1.48503 * 109.47443 * 329.99829 * 23 21 19 27 27 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47318 * 119.99375 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00006 * 1 2 3 30 30 H 1.08005 * 120.10049 * 0.02642 * 3 2 1 31 31 H 0.96693 * 114.00119 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.43900 * 179.97438 * 6 4 3 33 33 H 1.09005 * 109.46846 * 30.27416 * 10 9 7 34 34 H 1.08996 * 109.47546 * 150.27780 * 10 9 7 35 35 H 1.08999 * 109.46614 * 299.99835 * 11 10 9 36 36 H 1.08996 * 109.47234 * 59.99394 * 11 10 9 37 37 H 1.08996 * 109.47154 * 300.00155 * 15 14 12 38 38 H 1.08995 * 109.46630 * 60.00081 * 15 14 12 39 39 H 1.08996 * 109.47301 * 300.00127 * 16 15 14 40 40 H 1.09004 * 109.46999 * 60.00552 * 16 15 14 41 41 H 1.08996 * 109.47302 * 300.00178 * 17 16 15 42 42 H 1.09004 * 109.46815 * 60.00491 * 17 16 15 43 43 H 0.97006 * 120.00125 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 6 3.5824 1.1805 0.0005 5 8 4.2651 2.3504 0.0000 6 6 4.2574 -0.0260 0.0005 7 6 3.5229 -1.2176 0.0005 8 8 4.1041 -2.2916 0.0000 9 7 2.1774 -1.1821 0.0060 10 6 1.4233 -2.4381 0.0119 11 6 1.1609 -2.8822 -1.4286 12 6 0.3858 -4.1745 -1.4226 13 8 0.0755 -4.6880 -0.3738 14 8 0.0401 -4.7552 -2.5823 15 6 -0.7052 -5.9987 -2.5006 16 6 -1.0072 -6.5060 -3.9121 17 6 -1.7920 -7.8165 -3.8259 18 16 -2.1486 -8.4172 -5.4957 19 6 -3.0327 -9.8912 -5.1083 20 1 -3.1997 -10.1656 -4.0771 21 6 -3.5156 -10.6993 -6.1283 22 7 -4.1756 -11.8007 -5.8389 23 14 -3.2287 -10.2236 -7.9118 24 1 -1.9515 -10.8169 -8.3831 25 1 -4.3477 -10.7311 -8.7456 26 1 -3.1587 -8.7445 -8.0246 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6276 2.1065 0.0004 31 1 5.2262 2.2449 0.0009 32 1 5.3371 -0.0489 0.0005 33 1 1.9994 -3.2053 0.5293 34 1 0.4732 -2.2892 0.5249 35 1 0.5850 -2.1150 -1.9461 36 1 2.1110 -3.0311 -1.9417 37 1 -0.1142 -6.7420 -1.9656 38 1 -1.6409 -5.8270 -1.9686 39 1 -1.5984 -5.7625 -4.4467 40 1 -0.0716 -6.6776 -4.4444 41 1 -1.2004 -8.5598 -3.2914 42 1 -2.7276 -7.6454 -3.2934 43 1 -4.5127 -12.3656 -6.5518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805486641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -177.361749 kcal Electronic energy + Delta-G solvation = -25726.588164 eV Core-core repulsion = 21669.302943 eV Total energy + Delta-G solvation = -4057.285221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67339 -41.56537 -39.53178 -38.28732 -37.93247 -35.22349 -34.92711 -34.69033 -32.61781 -31.93521 -28.41140 -28.33794 -27.77397 -26.09406 -23.81390 -23.36105 -22.76941 -21.86082 -19.73658 -19.66227 -19.12569 -18.37430 -18.07313 -17.90435 -17.44855 -17.11284 -16.78371 -16.62747 -16.30411 -16.01435 -15.36253 -15.03179 -14.96127 -14.93776 -14.69444 -14.53450 -14.33916 -14.10861 -14.06074 -13.93906 -13.67737 -13.35470 -13.06778 -13.05429 -12.75247 -12.62853 -12.42538 -12.30459 -12.27140 -12.07142 -11.84200 -11.62137 -11.53988 -11.19543 -11.17309 -10.61341 -10.26534 -9.05766 -9.01473 -8.52671 -6.25019 -0.17068 0.84110 1.02037 1.04888 1.25675 1.32805 1.47523 1.63821 1.91526 2.24226 2.54867 2.65293 2.67964 2.85508 3.38284 3.47289 3.55969 3.69552 3.82192 3.93880 3.96153 4.02791 4.10051 4.12535 4.21176 4.28146 4.37247 4.49124 4.55543 4.61405 4.64613 4.69627 4.85494 4.97878 5.04180 5.07904 5.09550 5.14565 5.38160 5.48585 5.68550 6.05646 6.09460 6.50170 6.56876 6.90918 6.97243 8.60321 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029635 B = 0.001527 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.611281 B =18338.165896 C =18403.522722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.199 3.801 3 C -0.250 4.250 4 C 0.263 3.737 5 O -0.463 6.463 6 C -0.398 4.398 7 C 0.518 3.482 8 O -0.609 6.609 9 N -0.501 5.501 10 C 0.102 3.898 11 C -0.120 4.120 12 C 0.472 3.528 13 O -0.533 6.533 14 O -0.355 6.355 15 C 0.078 3.922 16 C -0.089 4.089 17 C -0.075 4.075 18 S -0.207 6.207 19 C -0.527 4.527 20 H 0.051 0.949 21 C 0.038 3.962 22 N -0.922 5.922 23 Si 0.926 3.074 24 H -0.262 1.262 25 H -0.263 1.263 26 H -0.226 1.226 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.427 0.573 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 35.219 12.066 39.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.091 3.909 3 C -0.273 4.273 4 C 0.209 3.791 5 O -0.267 6.267 6 C -0.421 4.421 7 C 0.325 3.675 8 O -0.498 6.498 9 N -0.212 5.212 10 C -0.020 4.020 11 C -0.158 4.158 12 C 0.315 3.685 13 O -0.423 6.423 14 O -0.271 6.271 15 C 0.003 3.997 16 C -0.127 4.127 17 C -0.223 4.223 18 S 0.021 5.979 19 C -0.675 4.675 20 H 0.069 0.931 21 C -0.167 4.167 22 N -0.559 5.559 23 Si 0.747 3.253 24 H -0.187 1.187 25 H -0.187 1.187 26 H -0.149 1.149 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.199 0.801 31 H 0.285 0.715 32 H 0.170 0.830 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.164 0.836 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.282 34.915 11.296 38.697 hybrid contribution 0.479 -1.786 0.851 2.036 sum 12.761 33.128 12.147 37.522 Atomic orbital electron populations 1.21410 0.84646 1.07765 1.05202 1.20945 0.96877 0.83534 0.89538 1.20237 0.90735 0.98949 1.17352 1.19356 0.92239 0.84088 0.83399 1.84787 1.27048 1.27608 1.87224 1.22188 1.01549 0.90628 1.27718 1.16930 0.81015 0.90961 0.78643 1.90962 1.68952 1.33108 1.56747 1.45500 1.07608 1.07594 1.60542 1.21686 0.98713 0.85257 0.96363 1.21656 1.01958 0.92716 0.99458 1.23718 0.76790 0.86610 0.81352 1.90699 1.53173 1.64970 1.33471 1.86453 1.67426 1.38507 1.34741 1.23051 0.95891 0.82616 0.98188 1.21154 1.01277 0.94815 0.95460 1.22979 1.02564 0.99275 0.97484 1.83808 1.72840 1.29028 1.12176 1.22358 1.40644 1.08437 0.96033 0.93091 1.25787 0.93028 0.93705 1.04137 1.70038 1.36528 1.13912 1.35452 0.85711 0.79122 0.82013 0.78484 1.18694 1.18710 1.14925 0.86051 0.88167 0.88311 0.80124 0.71501 0.83040 0.89952 0.85251 0.83590 0.87383 0.91203 0.90125 0.89234 0.89943 0.91287 0.90753 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.02 8.72 71.24 0.62 0.64 16 2 C 0.20 1.47 6.65 41.19 0.27 1.74 16 3 C -0.25 -1.78 9.57 22.19 0.21 -1.57 16 4 C 0.26 2.70 6.95 22.93 0.16 2.86 16 5 O -0.46 -2.74 13.58 -87.46 -1.19 -3.92 16 6 C -0.40 -6.37 9.71 22.70 0.22 -6.15 16 7 C 0.52 11.35 7.38 84.69 0.63 11.98 16 8 O -0.61 -19.23 16.62 -5.71 -0.09 -19.32 16 9 N -0.50 -7.24 2.59 -637.15 -1.65 -8.89 16 10 C 0.10 1.49 4.15 86.38 0.36 1.84 16 11 C -0.12 -1.66 6.12 29.85 0.18 -1.48 16 12 C 0.47 9.86 7.96 71.23 0.57 10.43 16 13 O -0.53 -14.06 15.73 21.97 0.35 -13.72 16 14 O -0.35 -8.13 10.22 -51.37 -0.52 -8.65 16 15 C 0.08 1.93 5.47 71.98 0.39 2.33 16 16 C -0.09 -2.47 5.60 30.59 0.17 -2.30 16 17 C -0.07 -2.73 5.67 71.98 0.41 -2.32 16 18 S -0.21 -9.69 19.41 -56.49 -1.10 -10.79 16 19 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 20 H 0.05 3.25 8.03 -2.91 -0.02 3.23 16 21 C 0.04 2.24 5.50 84.86 0.47 2.70 16 22 N -0.92 -56.54 13.97 21.65 0.30 -56.23 16 23 Si 0.93 43.53 27.74 68.60 1.90 45.43 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.23 -10.12 6.74 99.48 0.67 -9.45 16 27 H 0.12 -0.55 7.81 -2.39 -0.02 -0.56 16 28 H 0.10 -0.15 7.11 -2.39 -0.02 -0.17 16 29 H 0.10 -0.08 7.34 -2.39 -0.02 -0.09 16 30 H 0.18 0.31 7.88 -2.91 -0.02 0.29 16 31 H 0.43 -1.12 8.74 -74.06 -0.65 -1.76 16 32 H 0.15 2.15 8.00 -2.91 -0.02 2.13 16 33 H 0.08 1.77 7.34 -2.38 -0.02 1.75 16 34 H 0.13 1.20 6.31 -2.39 -0.02 1.19 16 35 H 0.15 0.96 7.16 -2.39 -0.02 0.94 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 38 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 39 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 2.57 8.14 -2.40 -0.02 2.56 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -83.96 381.31 3.70 -80.26 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.36 Total: 5.31 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.34 Total: -9.47 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.35 Total: -65.13 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.46 Total: -45.61 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.90 Total: 45.43 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.10 Total: -10.79 kcal Total: -83.96 3.70 -80.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805486641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.104 kcal (2) G-P(sol) polarization free energy of solvation -83.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds