Wall clock time and date at job start Sat Apr 11 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.50700 * 109.47317 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99569 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00545 * 179.97438 * 12 11 10 15 15 S 1.65598 * 120.00179 * 179.97438 * 14 12 11 16 16 O 1.42108 * 104.27692 * 181.07393 * 15 14 12 17 17 O 1.42093 * 104.28125 * 308.93186 * 15 14 12 18 18 C 1.81406 * 104.44907 * 65.00654 * 15 14 12 19 19 C 1.50690 * 109.47056 * 179.97438 * 18 15 14 20 20 H 1.07998 * 120.00531 * 359.97438 * 19 18 15 21 21 C 1.37879 * 119.99964 * 179.97438 * 19 18 15 22 22 N 1.31515 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00236 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47218 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46968 * 120.00100 * 23 21 19 26 26 H 1.48495 * 109.47286 * 239.99982 * 23 21 19 27 27 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 28 28 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 29 29 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 31 31 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 34 34 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 35 35 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 37 37 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 38 38 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 39 39 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 40 40 H 0.97006 * 119.99759 * 0.02562 * 14 12 11 41 41 H 1.08999 * 109.46773 * 299.99900 * 18 15 14 42 42 H 1.08997 * 109.46890 * 59.99747 * 18 15 14 43 43 H 0.97005 * 120.00003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2408 -3.8366 -1.6230 13 8 3.7661 -3.1647 -2.5142 14 7 5.0000 -4.9100 -1.9196 15 16 5.2830 -5.3125 -3.5007 16 8 6.0816 -6.4857 -3.4261 17 8 3.9911 -5.3422 -4.0916 18 6 6.2506 -3.9245 -4.1549 19 6 6.5746 -4.1773 -5.6047 20 1 6.2331 -5.0825 -6.0846 21 6 7.3072 -3.2528 -6.3187 22 7 7.7235 -2.1507 -5.7343 23 14 7.7094 -3.5663 -8.1158 24 1 7.1307 -4.8688 -8.5326 25 1 7.1337 -2.4800 -8.9487 26 1 9.1832 -3.5990 -8.2947 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.0783 0.6395 2.5847 35 1 1.8985 -0.5195 4.5950 36 1 3.3136 -2.5214 4.3748 37 1 3.9149 -3.3662 2.1426 38 1 4.9303 -3.2694 0.3156 39 1 3.4767 -4.2968 0.3154 40 1 5.3799 -5.4472 -1.2068 41 1 5.6723 -3.0049 -4.0665 42 1 7.1763 -3.8276 -3.5877 43 1 8.2392 -1.5004 -6.2365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:07 Heat of formation + Delta-G solvation = -134.666091 kcal Electronic energy + Delta-G solvation = -27382.810398 eV Core-core repulsion = 23327.376599 eV Total energy + Delta-G solvation = -4055.433799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.78031 -39.67262 -37.62455 -36.31006 -35.48229 -35.25054 -34.27230 -33.38070 -30.46514 -30.21544 -29.10048 -28.33594 -27.19336 -23.85800 -23.57047 -22.64149 -21.47419 -20.19654 -19.38850 -18.40341 -17.78947 -17.13656 -16.69341 -16.49321 -16.22782 -15.74012 -15.58649 -14.82584 -14.70829 -14.59015 -14.46907 -14.21093 -14.05555 -13.84640 -13.47242 -12.91890 -12.61326 -12.57046 -12.24807 -12.20814 -12.17905 -12.02901 -11.84539 -11.49080 -11.37974 -11.33257 -11.26835 -11.21445 -10.95223 -10.73982 -10.70716 -10.67847 -10.58176 -10.07897 -9.81288 -9.22949 -9.05855 -8.73559 -8.34005 -6.35324 -4.46802 0.90967 1.09854 1.22559 2.19286 2.56525 3.19831 3.26508 3.33050 3.36445 3.53356 4.11638 4.23836 4.43440 4.51087 4.61092 4.65858 4.77298 4.79256 4.94297 4.98844 5.01647 5.11576 5.13166 5.15264 5.17522 5.34560 5.43264 5.54839 5.70038 5.75610 5.86083 5.97471 6.04146 6.16817 6.19297 6.29893 6.44417 6.48900 6.55592 6.70151 6.86115 7.15120 7.39236 7.60831 7.71538 8.54432 9.20921 10.76432 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.002793 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.683933 B =10023.989146 C =11025.089045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.099 4.099 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.086 4.086 8 C -0.209 4.209 9 C 0.131 3.869 10 O -0.285 6.285 11 C 0.039 3.961 12 C 0.534 3.466 13 O -0.460 6.460 14 N -1.057 6.057 15 S 2.552 3.448 16 O -0.965 6.965 17 O -0.949 6.949 18 C -0.403 4.403 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.077 3.923 22 N -0.876 5.876 23 Si 0.908 3.092 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.425 0.575 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.001 3.415 20.674 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.100 4.100 5 C -0.097 4.097 6 C -0.175 4.175 7 C -0.104 4.104 8 C -0.228 4.228 9 C 0.086 3.914 10 O -0.197 6.197 11 C -0.041 4.041 12 C 0.317 3.683 13 O -0.329 6.329 14 N -0.818 5.818 15 S 2.655 3.345 16 O -0.956 6.956 17 O -0.940 6.940 18 C -0.540 4.540 19 C -0.575 4.575 20 H 0.090 0.910 21 C -0.129 4.129 22 N -0.512 5.512 23 Si 0.734 3.266 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.259 0.741 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.690 3.357 19.424 21.965 hybrid contribution 0.974 -0.073 -0.015 0.977 sum -8.716 3.284 19.409 21.528 Atomic orbital electron populations 1.21832 0.94421 1.01915 1.01610 1.20057 0.95733 0.95954 0.96009 1.21835 1.01408 0.95000 1.01596 1.19275 0.99829 0.95021 0.95845 1.20837 0.98629 0.99238 0.90960 1.21033 1.00741 0.97234 0.98522 1.20899 0.96948 0.95960 0.96566 1.21254 1.05970 1.03006 0.92542 1.18878 0.95269 0.93768 0.83530 1.86167 1.65470 1.42403 1.25683 1.22610 0.96957 0.89157 0.95394 1.19851 0.77410 0.79687 0.91329 1.90970 1.45295 1.48369 1.48216 1.55511 1.58458 1.36408 1.31406 1.07248 0.76484 0.78695 0.72079 1.93529 1.71413 1.46545 1.84124 1.93538 1.39189 1.87521 1.73726 1.27604 1.08254 1.11176 1.06934 1.20316 1.37823 1.07412 0.91940 0.91019 1.24928 0.94325 0.94283 0.99403 1.69965 1.35079 1.08907 1.37223 0.86267 0.78372 0.79045 0.82963 1.18950 1.20240 1.20305 0.92864 0.92252 0.92620 0.88841 0.92880 0.92483 0.92231 0.85470 0.86035 0.85867 0.85349 0.88009 0.88261 0.74084 0.88289 0.89612 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.01 37.16 0.33 -1.03 16 2 C -0.06 -0.67 3.06 -91.77 -0.28 -0.95 16 3 C -0.14 -1.41 9.01 37.16 0.33 -1.08 16 4 C -0.10 -1.12 4.79 -104.48 -0.50 -1.62 16 5 C -0.08 -0.72 8.71 -39.61 -0.34 -1.07 16 6 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 7 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 8 C -0.21 -1.98 9.04 -39.43 -0.36 -2.34 16 9 C 0.13 1.56 6.66 -39.21 -0.26 1.30 16 10 O -0.29 -3.93 8.44 -39.34 -0.33 -4.27 16 11 C 0.04 0.43 5.22 36.01 0.19 0.62 16 12 C 0.53 8.47 7.64 -10.99 -0.08 8.38 16 13 O -0.46 -9.65 14.60 -22.96 -0.34 -9.98 16 14 N -1.06 -15.76 5.60 31.22 0.17 -15.58 16 15 S 2.55 53.77 5.03 -107.50 -0.54 53.23 16 16 O -0.97 -21.35 18.08 -57.54 -1.04 -22.39 16 17 O -0.95 -23.27 17.04 -64.78 -1.10 -24.37 16 18 C -0.40 -9.87 5.64 36.00 0.20 -9.66 16 19 C -0.54 -14.88 9.13 -34.44 -0.31 -15.20 16 20 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 21 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 22 N -0.88 -24.95 13.29 55.43 0.74 -24.21 16 23 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.05 0.43 7.39 -51.93 -0.38 0.05 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 31 H 0.05 0.44 7.39 -51.93 -0.38 0.06 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.13 0.93 7.10 -52.48 -0.37 0.56 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 38 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 39 H 0.10 0.77 7.67 -51.93 -0.40 0.37 16 40 H 0.43 4.18 8.79 -34.47 -0.30 3.87 16 41 H 0.10 2.56 7.19 -51.92 -0.37 2.18 16 42 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -36.92 375.71 -9.58 -46.50 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.81 Total: 2.74 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.97 Total: -23.39 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.91 Total: -39.79 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.81 Total: -61.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.54 Total: 53.23 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.92 -9.58 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.170 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds