Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47111 * 2 1 4 4 C 1.50698 * 109.47372 * 119.99926 * 2 1 3 5 5 C 1.38293 * 119.97363 * 299.98164 * 4 2 1 6 6 C 1.38247 * 120.11281 * 180.02562 * 5 4 2 7 7 C 1.38170 * 120.05292 * 359.67902 * 6 5 4 8 8 C 1.38712 * 119.94573 * 0.61946 * 7 6 5 9 9 O 1.35897 * 120.05594 * 179.67820 * 8 7 6 10 10 C 1.42899 * 116.99793 * 359.72146 * 9 8 7 11 11 C 1.50702 * 109.46876 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 S 1.65603 * 120.00017 * 180.27533 * 13 11 10 15 15 O 1.42102 * 104.27468 * 181.07230 * 14 13 11 16 16 O 1.42102 * 104.27712 * 308.93122 * 14 13 11 17 17 C 1.81398 * 104.44829 * 65.00347 * 14 13 11 18 18 C 1.50695 * 109.47148 * 179.97438 * 17 14 13 19 19 H 1.07994 * 120.00253 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99819 * 180.02562 * 18 17 14 21 21 N 1.31521 * 119.99533 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00178 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46923 * 90.00353 * 22 20 18 24 24 H 1.48503 * 109.47021 * 210.00314 * 22 20 18 25 25 H 1.48501 * 109.46968 * 330.00121 * 22 20 18 26 26 C 1.38123 * 119.97376 * 119.99889 * 4 2 1 27 27 H 1.08998 * 109.47539 * 299.99850 * 1 2 3 28 28 H 1.08998 * 109.47202 * 60.00006 * 1 2 3 29 29 H 1.09008 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47539 * 240.00150 * 2 1 3 31 31 H 1.09004 * 109.47147 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47082 * 300.00067 * 3 2 1 33 33 H 1.08995 * 109.46546 * 60.00151 * 3 2 1 34 34 H 1.08001 * 119.94264 * 359.97438 * 5 4 2 35 35 H 1.07998 * 119.97015 * 179.97438 * 6 5 4 36 36 H 1.08001 * 120.02378 * 180.29425 * 7 6 5 37 37 H 1.09004 * 109.47206 * 60.00256 * 10 9 8 38 38 H 1.08994 * 109.47548 * 299.99913 * 10 9 8 39 39 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 40 40 H 1.08997 * 109.46903 * 300.00169 * 17 14 13 41 41 H 1.09003 * 109.47146 * 60.00111 * 17 14 13 42 42 H 0.97005 * 119.99419 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.02893 * 0.02760 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6983 -0.2372 2.4862 6 6 2.1580 -0.8863 3.6169 7 6 2.9473 -2.0138 3.4948 8 6 3.2889 -2.4868 2.2363 9 8 4.0705 -3.5918 2.1136 10 6 4.5100 -4.2130 3.3231 11 6 5.3584 -5.4136 2.9915 12 8 5.5666 -5.7079 1.8335 13 7 5.8909 -6.1567 3.9819 14 16 6.8288 -7.4720 3.6175 15 8 7.1842 -8.0105 4.8836 16 8 6.0435 -8.2185 2.6981 17 6 8.2852 -6.7744 2.7911 18 6 9.2258 -7.8872 2.4067 19 1 8.9727 -8.9117 2.6363 20 6 10.4096 -7.5974 1.7620 21 7 11.2303 -8.5687 1.4262 22 14 10.8472 -5.8255 1.3643 23 1 11.6079 -5.2375 2.4961 24 1 11.6788 -5.7850 0.1347 25 1 9.6026 -5.0454 1.1460 26 6 2.8264 -1.8333 1.1031 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9562 0.8900 34 1 1.0778 0.6414 2.5837 35 1 1.8960 -0.5146 4.5965 36 1 3.3022 -2.5233 4.3784 37 1 3.6440 -4.5299 3.9044 38 1 5.0972 -3.5021 3.9042 39 1 5.7247 -5.9212 4.9081 40 1 7.9722 -6.2371 1.8958 41 1 8.7930 -6.0875 3.4682 42 1 12.0630 -8.3649 0.9723 43 1 3.0877 -2.2021 0.1221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -131.203357 kcal Electronic energy + Delta-G solvation = -26796.722528 eV Core-core repulsion = 22741.438885 eV Total energy + Delta-G solvation = -4055.283643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79366 -39.80362 -38.17065 -36.43840 -35.36876 -35.24550 -34.41040 -33.28052 -31.23759 -29.86787 -29.70618 -28.58901 -27.50845 -23.76991 -23.11935 -22.92313 -21.85973 -20.36458 -19.39316 -18.31759 -17.87602 -17.42106 -16.77552 -16.66369 -16.28105 -16.04450 -15.72729 -15.32671 -14.85473 -14.61634 -14.56669 -14.20917 -14.02458 -13.86609 -13.82026 -13.16997 -12.80382 -12.74356 -12.59432 -12.47479 -12.40602 -12.18184 -11.74167 -11.70335 -11.64142 -11.47613 -11.37964 -11.24697 -11.16009 -10.95063 -10.89188 -10.79156 -10.38511 -10.14717 -9.90547 -9.47159 -9.12719 -8.84897 -8.48291 -6.33636 -4.43422 0.73649 1.00626 1.15603 2.05177 2.44795 3.13977 3.22603 3.25504 3.26051 3.44326 4.01497 4.21421 4.30425 4.35990 4.45242 4.51114 4.65088 4.66626 4.76593 4.80859 4.82177 4.93107 4.99807 5.03689 5.07470 5.21821 5.24416 5.25285 5.45222 5.53059 5.60629 5.75058 5.82706 5.86758 5.99482 6.11770 6.12657 6.25184 6.30590 6.44588 6.68301 7.07056 7.13582 7.47753 7.97272 8.56275 9.20845 10.77124 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.002482 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.307700 B =11277.056378 C =12334.096872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.037 4.037 5 C -0.154 4.154 6 C -0.077 4.077 7 C -0.217 4.217 8 C 0.134 3.866 9 O -0.288 6.288 10 C 0.039 3.961 11 C 0.533 3.467 12 O -0.461 6.461 13 N -1.058 6.058 14 S 2.578 3.422 15 O -0.956 6.956 16 O -0.940 6.940 17 C -0.458 4.458 18 C -0.534 4.534 19 H 0.088 0.912 20 C 0.091 3.909 21 N -0.878 5.878 22 Si 0.881 3.119 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.261 1.261 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.427 0.573 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.272 0.728 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.165 21.801 4.444 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.038 4.038 5 C -0.172 4.172 6 C -0.095 4.095 7 C -0.235 4.235 8 C 0.088 3.912 9 O -0.201 6.201 10 C -0.041 4.041 11 C 0.317 3.683 12 O -0.330 6.330 13 N -0.820 5.820 14 S 2.678 3.322 15 O -0.947 6.947 16 O -0.930 6.930 17 C -0.593 4.593 18 C -0.573 4.573 19 H 0.106 0.894 20 C -0.116 4.116 21 N -0.513 5.513 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.185 1.185 26 C -0.164 4.164 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.262 0.738 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.057 20.539 3.499 28.920 hybrid contribution 0.609 1.450 0.476 1.643 sum -19.448 21.989 3.975 29.623 Atomic orbital electron populations 1.21853 0.94056 1.02216 1.01972 1.20169 0.96127 0.96147 0.95316 1.21856 1.01445 0.94845 1.01972 1.19655 0.95250 0.93849 0.95006 1.20872 1.03085 1.01487 0.91768 1.20903 0.95745 0.94195 0.98694 1.21260 1.05368 1.00828 0.96077 1.19022 0.91306 0.86682 0.94141 1.86182 1.63933 1.39374 1.30582 1.22610 0.99534 0.94228 0.87724 1.19901 0.79578 0.83552 0.85307 1.90972 1.55671 1.67988 1.18349 1.55557 1.62420 1.47418 1.16589 1.06397 0.76956 0.73644 0.75154 1.93553 1.84344 1.74946 1.41819 1.93563 1.67677 1.66786 1.65015 1.28101 1.13248 1.08893 1.09106 1.20011 1.03410 0.91616 1.42265 0.89443 1.24853 0.95188 0.97933 0.93632 1.69863 1.10842 1.32221 1.38383 0.86740 0.79264 0.84619 0.78720 1.19591 1.20424 1.18520 1.20372 1.01599 0.96871 0.97573 0.92406 0.92247 0.92371 0.90084 0.92362 0.92237 0.92409 0.86016 0.85735 0.85367 0.88047 0.87937 0.73834 0.88425 0.90050 0.91756 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.01 37.15 0.33 -0.51 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -0.86 9.01 37.16 0.33 -0.53 16 4 C -0.04 -0.33 4.78 -104.64 -0.50 -0.83 16 5 C -0.15 -1.20 8.71 -39.56 -0.34 -1.55 16 6 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 7 C -0.22 -1.89 9.04 -39.43 -0.36 -2.25 16 8 C 0.13 1.50 6.69 -39.21 -0.26 1.24 16 9 O -0.29 -3.80 9.67 -39.33 -0.38 -4.18 16 10 C 0.04 0.40 5.22 36.01 0.19 0.59 16 11 C 0.53 7.91 7.64 -10.98 -0.08 7.83 16 12 O -0.46 -9.24 14.60 -22.96 -0.34 -9.57 16 13 N -1.06 -14.58 5.60 31.22 0.17 -14.41 16 14 S 2.58 52.25 5.03 -107.50 -0.54 51.71 16 15 O -0.96 -20.53 18.08 -57.54 -1.04 -21.57 16 16 O -0.94 -22.58 17.04 -64.79 -1.10 -23.68 16 17 C -0.46 -10.46 4.71 36.00 0.17 -10.29 16 18 C -0.53 -15.06 9.68 -34.44 -0.33 -15.39 16 19 H 0.09 2.63 7.96 -52.49 -0.42 2.22 16 20 C 0.09 2.59 5.47 -17.82 -0.10 2.49 16 21 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 22 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.26 -5.92 6.54 56.52 0.37 -5.56 16 26 C -0.15 -1.56 9.61 -39.43 -0.38 -1.93 16 27 H 0.06 0.31 7.39 -51.93 -0.38 -0.07 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 7.38 -51.93 -0.38 -0.07 16 34 H 0.12 0.73 7.10 -52.49 -0.37 0.36 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 37 H 0.10 0.70 7.65 -51.93 -0.40 0.30 16 38 H 0.10 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.43 3.66 8.79 -34.47 -0.30 3.36 16 40 H 0.10 2.24 6.25 -51.93 -0.32 1.92 16 41 H 0.08 1.63 7.57 -51.92 -0.39 1.23 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.13 1.40 7.94 -52.48 -0.42 0.98 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -38.02 373.70 -9.31 -47.33 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.81 Total: 0.85 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -2.01 Total: -22.82 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.95 Total: -39.85 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -2.86 Total: -59.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.54 Total: 51.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.02 -9.31 -47.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.873 kcal (2) G-P(sol) polarization free energy of solvation -38.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds