Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76204 * 102.99851 * 2 1 4 4 C 1.35104 * 125.51584 * 180.02562 * 3 2 1 5 5 C 1.47093 * 105.87739 * 179.97438 * 4 3 2 6 6 C 1.47232 * 127.15997 * 179.97438 * 5 4 3 7 7 O 1.21543 * 120.00258 * 180.02562 * 6 5 4 8 8 O 1.34785 * 119.99799 * 0.02562 * 6 5 4 9 9 C 1.45194 * 116.99919 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47239 * 329.99993 * 9 8 6 11 11 C 1.52997 * 109.47339 * 90.00236 * 9 8 6 12 12 C 1.50708 * 109.47032 * 210.00337 * 9 8 6 13 13 O 1.21280 * 119.99888 * 354.99873 * 12 9 8 14 14 N 1.34777 * 119.99928 * 174.99982 * 12 9 8 15 15 C 1.46496 * 119.99889 * 359.97438 * 14 12 9 16 16 C 1.46500 * 119.99779 * 179.97438 * 14 12 9 17 17 C 1.50694 * 109.46954 * 89.99836 * 16 14 12 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99994 * 179.97438 * 17 16 14 20 20 N 1.31509 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00154 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46987 * 90.00313 * 21 19 17 23 23 H 1.48498 * 109.47209 * 210.00317 * 21 19 17 24 24 H 1.48500 * 109.47126 * 330.00657 * 21 19 17 25 25 C 1.36415 * 105.68715 * 0.24041 * 5 4 3 26 26 C 1.50700 * 125.72450 * 179.72830 * 25 5 4 27 27 O 1.33921 * 108.55566 * 359.60779 * 25 5 4 28 28 H 1.08995 * 109.46586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47011 * 299.99481 * 1 2 3 30 30 H 1.08997 * 109.46843 * 59.99709 * 1 2 3 31 31 H 1.08001 * 127.06212 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99705 * 11 9 8 33 33 H 1.09001 * 109.46832 * 299.99896 * 11 9 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47373 * 90.00178 * 15 14 12 36 36 H 1.09005 * 109.46584 * 209.99714 * 15 14 12 37 37 H 1.08999 * 109.47384 * 329.99408 * 15 14 12 38 38 H 1.08993 * 109.47001 * 209.99914 * 16 14 12 39 39 H 1.09002 * 109.47216 * 330.00108 * 16 14 12 40 40 H 0.97004 * 120.00789 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47420 * 89.99951 * 26 25 5 42 42 H 1.09008 * 109.47075 * 209.99877 * 26 25 5 43 43 H 1.09001 * 109.47206 * 329.99432 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.4584 2.2343 -0.0005 5 6 3.2884 3.6954 -0.0009 6 6 4.3510 4.7144 -0.0010 7 8 4.0612 5.8948 -0.0009 8 8 5.6453 4.3383 -0.0012 9 6 6.6393 5.3967 -0.0007 10 1 6.2393 6.2711 -0.5141 11 6 6.9885 5.7678 1.4420 12 6 7.8801 4.9209 -0.7114 13 8 7.9576 3.7723 -1.0930 14 7 8.9037 5.7718 -0.9230 15 6 8.8098 7.1594 -0.4626 16 6 10.1101 5.3091 -1.6134 17 6 9.9542 5.5255 -3.0966 18 1 9.0474 5.9642 -3.4860 19 6 10.9697 5.1643 -3.9564 20 7 12.0742 4.6306 -3.4823 21 14 10.7769 5.4332 -5.7949 22 1 11.2877 6.7805 -6.1544 23 1 11.5482 4.3990 -6.5301 24 1 9.3413 5.3341 -6.1618 25 6 1.9412 3.9099 0.0049 26 6 1.2646 5.2564 0.0126 27 8 1.3207 2.7231 -0.0001 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.3898 1.6874 -0.0013 32 1 7.3885 4.8934 1.9554 33 1 6.0910 6.1119 1.9560 34 1 7.7350 6.5620 1.4424 35 1 9.1985 7.2323 0.5532 36 1 9.3940 7.8012 -1.1220 37 1 7.7672 7.4771 -0.4764 38 1 10.9725 5.8697 -1.2531 39 1 10.2579 4.2476 -1.4147 40 1 12.7885 4.3761 -4.0872 41 1 1.0977 5.5851 -1.0131 42 1 0.3081 5.1795 0.5297 43 1 1.8986 5.9786 0.5270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850228196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = -96.634614 kcal Electronic energy + Delta-G solvation = -27202.511127 eV Core-core repulsion = 23148.726497 eV Total energy + Delta-G solvation = -4053.784630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.85885 -40.44672 -38.86184 -36.38280 -34.90551 -33.52926 -32.84464 -32.24244 -31.47037 -29.47542 -27.76756 -27.49630 -26.15934 -24.88676 -23.84104 -22.47243 -21.51510 -20.24164 -18.94093 -18.68563 -17.33041 -16.91214 -16.54358 -16.45015 -15.97194 -15.84530 -15.54942 -15.17914 -14.59027 -14.53087 -14.12084 -14.07183 -13.77634 -13.57182 -13.44847 -13.29089 -13.16312 -12.92706 -12.84083 -12.37258 -12.17215 -12.08508 -12.03025 -11.66594 -11.40137 -11.19142 -11.15322 -10.91114 -10.69194 -10.63010 -10.54690 -10.41161 -10.16395 -9.70610 -9.64486 -8.89228 -8.44334 -7.72700 -7.71914 -6.05258 -4.10119 0.79436 0.88762 1.46869 1.56167 2.43362 2.91948 2.99163 3.27971 3.30794 3.37516 3.43065 3.89923 4.37247 4.44305 4.60438 4.61397 4.62150 4.71291 4.85354 4.99653 5.01072 5.10906 5.16384 5.20865 5.29277 5.30941 5.37002 5.56133 5.66346 5.67645 5.73398 5.86420 5.96777 6.01585 6.22578 6.38574 6.52486 6.99007 7.39726 7.47233 7.73463 7.90897 8.20784 8.29989 8.85630 9.00449 9.54934 11.02885 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002567 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.512502 B =10903.301765 C =11881.331086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.014 6.014 3 C -0.042 4.042 4 C -0.120 4.120 5 C -0.213 4.213 6 C 0.543 3.457 7 O -0.513 6.513 8 O -0.315 6.315 9 C 0.071 3.929 10 H 0.107 0.893 11 C -0.170 4.170 12 C 0.508 3.492 13 O -0.518 6.518 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.093 3.907 26 C -0.084 4.084 27 O -0.169 6.169 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.605 -1.446 11.740 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.223 5.777 3 C -0.200 4.200 4 C -0.148 4.148 5 C -0.217 4.217 6 C 0.388 3.612 7 O -0.404 6.404 8 O -0.230 6.230 9 C 0.012 3.988 10 H 0.124 0.876 11 C -0.227 4.227 12 C 0.293 3.707 13 O -0.393 6.393 14 N -0.330 5.330 15 C -0.068 4.068 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.037 3.963 26 C -0.140 4.140 27 O -0.067 6.067 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.081 -2.871 11.471 25.934 hybrid contribution -0.612 1.332 -1.117 1.843 sum -23.694 -1.539 10.354 25.903 Atomic orbital electron populations 1.23636 0.94636 1.07367 1.06572 1.85970 1.06347 0.91868 1.93553 1.24028 0.90386 0.92431 1.13168 1.22750 0.97228 0.91526 1.03300 1.20073 0.91348 0.92810 1.17431 1.19869 0.82348 0.86738 0.72200 1.90793 1.83616 1.18507 1.47470 1.86688 1.14558 1.38704 1.83058 1.22662 0.87433 0.89997 0.98678 0.87555 1.22282 1.03224 1.03422 0.93769 1.19754 0.83810 0.86525 0.80646 1.90709 1.80048 1.18117 1.50467 1.48065 1.18267 1.09721 1.56912 1.21845 1.01533 0.84058 0.99334 1.19349 0.79681 0.96867 0.91281 1.21424 1.02177 1.41545 0.91563 0.92431 1.24930 0.95086 0.94897 0.99141 1.69926 1.06148 1.41932 1.35304 0.86487 0.78270 0.77783 0.84847 1.20610 1.21030 1.19863 1.22856 0.90146 0.86545 0.96795 1.20699 1.01192 0.87267 1.04867 1.83931 1.36729 1.13346 1.72690 0.86938 0.89345 0.89304 0.80994 0.90938 0.91275 0.89243 0.93121 0.90298 0.92335 0.94594 0.93633 0.92659 0.88798 0.90038 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.45 101.05 1.06 0.19 16 2 S -0.01 -0.13 22.74 -107.50 -2.44 -2.58 16 3 C -0.04 -0.50 7.32 29.62 0.22 -0.28 16 4 C -0.12 -1.62 11.01 -37.11 -0.41 -2.03 16 5 C -0.21 -2.99 6.31 -103.31 -0.65 -3.64 16 6 C 0.54 8.64 7.93 34.38 0.27 8.92 16 7 O -0.51 -8.15 14.09 -19.30 -0.27 -8.42 16 8 O -0.32 -5.66 9.33 -47.39 -0.44 -6.10 16 9 C 0.07 1.21 2.17 -27.88 -0.06 1.15 16 10 H 0.11 1.73 6.15 -51.93 -0.32 1.41 16 11 C -0.17 -2.25 9.28 37.16 0.34 -1.91 16 12 C 0.51 11.11 7.10 -10.98 -0.08 11.03 16 13 O -0.52 -13.72 16.09 -14.05 -0.23 -13.95 16 14 N -0.60 -12.76 2.86 -182.96 -0.52 -13.28 16 15 C 0.08 1.19 8.92 59.84 0.53 1.72 16 16 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 17 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 18 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 21 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.09 1.08 7.37 -34.97 -0.26 0.82 16 26 C -0.08 -0.70 9.88 36.01 0.36 -0.34 16 27 O -0.17 -1.90 10.19 6.69 0.07 -1.83 16 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.04 5.12 -51.93 -0.27 0.77 16 35 H 0.05 0.65 7.02 -51.93 -0.36 0.29 16 36 H 0.08 1.25 8.07 -51.93 -0.42 0.84 16 37 H 0.06 0.77 6.08 -51.93 -0.32 0.46 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.11 1.02 6.48 -51.93 -0.34 0.68 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -35.34 382.76 -7.23 -42.57 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.75 Total: -1.64 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 0.88 Total: 8.32 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.21 Total: -39.18 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.87 Total: -30.31 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.44 Total: -2.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.34 -7.23 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850228196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.065 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds