Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76204 * 102.99851 * 2 1 4 4 C 1.35104 * 125.51584 * 180.02562 * 3 2 1 5 5 C 1.47093 * 105.87739 * 179.97438 * 4 3 2 6 6 C 1.47232 * 127.15997 * 179.97438 * 5 4 3 7 7 O 1.21543 * 120.00258 * 180.02562 * 6 5 4 8 8 O 1.34785 * 119.99799 * 0.02562 * 6 5 4 9 9 C 1.45194 * 116.99919 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47239 * 329.99993 * 9 8 6 11 11 C 1.52997 * 109.47339 * 90.00236 * 9 8 6 12 12 C 1.50708 * 109.47032 * 210.00337 * 9 8 6 13 13 O 1.21280 * 119.99888 * 354.99873 * 12 9 8 14 14 N 1.34777 * 119.99928 * 174.99982 * 12 9 8 15 15 C 1.46496 * 119.99889 * 359.97438 * 14 12 9 16 16 C 1.46500 * 119.99779 * 179.97438 * 14 12 9 17 17 C 1.50694 * 109.46954 * 89.99836 * 16 14 12 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99994 * 179.97438 * 17 16 14 20 20 N 1.31509 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00154 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46987 * 90.00313 * 21 19 17 23 23 H 1.48498 * 109.47209 * 210.00317 * 21 19 17 24 24 H 1.48500 * 109.47126 * 330.00657 * 21 19 17 25 25 C 1.36415 * 105.68715 * 0.24041 * 5 4 3 26 26 C 1.50700 * 125.72450 * 179.72830 * 25 5 4 27 27 O 1.33921 * 108.55566 * 359.60779 * 25 5 4 28 28 H 1.08995 * 109.46586 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47011 * 299.99481 * 1 2 3 30 30 H 1.08997 * 109.46843 * 59.99709 * 1 2 3 31 31 H 1.08001 * 127.06212 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99705 * 11 9 8 33 33 H 1.09001 * 109.46832 * 299.99896 * 11 9 8 34 34 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47373 * 90.00178 * 15 14 12 36 36 H 1.09005 * 109.46584 * 209.99714 * 15 14 12 37 37 H 1.08999 * 109.47384 * 329.99408 * 15 14 12 38 38 H 1.08993 * 109.47001 * 209.99914 * 16 14 12 39 39 H 1.09002 * 109.47216 * 330.00108 * 16 14 12 40 40 H 0.97004 * 120.00789 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.47420 * 89.99951 * 26 25 5 42 42 H 1.09008 * 109.47075 * 209.99877 * 26 25 5 43 43 H 1.09001 * 109.47206 * 329.99432 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.4584 2.2343 -0.0005 5 6 3.2884 3.6954 -0.0009 6 6 4.3510 4.7144 -0.0010 7 8 4.0612 5.8948 -0.0009 8 8 5.6453 4.3383 -0.0012 9 6 6.6393 5.3967 -0.0007 10 1 6.2393 6.2711 -0.5141 11 6 6.9885 5.7678 1.4420 12 6 7.8801 4.9209 -0.7114 13 8 7.9576 3.7723 -1.0930 14 7 8.9037 5.7718 -0.9230 15 6 8.8098 7.1594 -0.4626 16 6 10.1101 5.3091 -1.6134 17 6 9.9542 5.5255 -3.0966 18 1 9.0474 5.9642 -3.4860 19 6 10.9697 5.1643 -3.9564 20 7 12.0742 4.6306 -3.4823 21 14 10.7769 5.4332 -5.7949 22 1 11.2877 6.7805 -6.1544 23 1 11.5482 4.3990 -6.5301 24 1 9.3413 5.3341 -6.1618 25 6 1.9412 3.9099 0.0049 26 6 1.2646 5.2564 0.0126 27 8 1.3207 2.7231 -0.0001 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.3898 1.6874 -0.0013 32 1 7.3885 4.8934 1.9554 33 1 6.0910 6.1119 1.9560 34 1 7.7350 6.5620 1.4424 35 1 9.1985 7.2323 0.5532 36 1 9.3940 7.8012 -1.1220 37 1 7.7672 7.4771 -0.4764 38 1 10.9725 5.8697 -1.2531 39 1 10.2579 4.2476 -1.4147 40 1 12.7885 4.3761 -4.0872 41 1 1.0977 5.5851 -1.0131 42 1 0.3081 5.1795 0.5297 43 1 1.8986 5.9786 0.5270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850228196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -118.042704 kcal Electronic energy + Delta-G solvation = -27203.439452 eV Core-core repulsion = 23148.726497 eV Total energy + Delta-G solvation = -4054.712955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.78854 -41.79293 -40.46834 -37.70050 -36.72177 -34.93579 -34.45998 -33.13465 -32.87709 -29.93000 -29.63841 -28.41262 -27.66122 -26.19723 -25.38565 -23.94416 -22.68504 -21.26016 -20.42596 -19.86795 -18.74039 -18.50518 -17.97626 -17.83994 -17.31877 -17.04834 -16.69187 -16.61848 -16.34990 -15.82908 -15.26028 -14.86989 -14.72191 -14.54149 -14.47318 -14.35569 -14.21147 -14.09774 -13.92030 -13.69209 -13.58957 -13.52508 -13.32735 -13.05577 -12.83697 -12.80924 -12.61595 -12.52439 -12.23629 -11.95966 -11.81045 -11.78316 -11.73078 -11.36169 -10.65910 -10.64936 -10.59844 -9.53499 -8.51025 -8.25077 -6.39635 -0.10787 -0.02134 0.55673 0.85767 1.19314 1.35120 1.38409 1.48477 1.59754 1.79853 2.10507 2.31233 2.43051 3.04840 3.37904 3.47763 3.51569 3.71155 3.76263 3.83131 4.21183 4.21644 4.25252 4.33621 4.40560 4.52373 4.56292 4.58447 4.60705 4.69051 4.82024 4.86831 4.93442 4.95005 5.04389 5.08978 5.17499 5.24080 5.49775 5.58209 5.76698 6.02069 6.46602 6.60947 6.68878 7.18830 7.34364 8.82309 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.002567 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.512502 B =10903.301765 C =11881.331086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.030 6.030 3 C -0.035 4.035 4 C -0.151 4.151 5 C -0.248 4.248 6 C 0.542 3.458 7 O -0.515 6.515 8 O -0.339 6.339 9 C 0.080 3.920 10 H 0.120 0.880 11 C -0.161 4.161 12 C 0.499 3.501 13 O -0.580 6.580 14 N -0.599 5.599 15 C 0.068 3.932 16 C 0.260 3.740 17 C -0.547 4.547 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.967 3.033 22 H -0.260 1.260 23 H -0.280 1.280 24 H -0.276 1.276 25 C 0.111 3.889 26 C -0.083 4.083 27 O -0.161 6.161 28 H 0.137 0.863 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.160 0.840 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.000 1.000 40 H 0.268 0.732 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.301 0.098 11.949 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.207 5.793 3 C -0.193 4.193 4 C -0.179 4.179 5 C -0.251 4.251 6 C 0.389 3.611 7 O -0.407 6.407 8 O -0.255 6.255 9 C 0.022 3.978 10 H 0.138 0.862 11 C -0.218 4.218 12 C 0.286 3.714 13 O -0.460 6.460 14 N -0.331 5.331 15 C -0.074 4.074 16 C 0.139 3.861 17 C -0.585 4.585 18 H 0.069 0.931 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.201 1.201 25 C 0.054 3.946 26 C -0.139 4.139 27 O -0.059 6.059 28 H 0.156 0.844 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.178 0.822 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.792 -1.269 11.712 28.355 hybrid contribution 0.143 0.789 -1.146 1.398 sum -25.649 -0.480 10.566 27.744 Atomic orbital electron populations 1.23791 0.91072 1.09193 1.07244 1.86104 1.10240 0.89862 1.93143 1.24307 0.89940 0.93583 1.11461 1.22725 0.97761 0.91811 1.05576 1.20151 0.92050 0.92717 1.20220 1.20105 0.81828 0.87246 0.71938 1.90766 1.83451 1.18506 1.47966 1.86688 1.15673 1.39557 1.83572 1.22605 0.85132 0.89592 1.00482 0.86248 1.22298 1.04783 1.03814 0.90906 1.20653 0.85080 0.85734 0.79964 1.90668 1.81441 1.20792 1.53060 1.48048 1.16781 1.12110 1.56143 1.22215 1.03808 0.80432 1.00932 1.18848 0.81852 0.94310 0.91058 1.21678 1.02050 1.41849 0.92932 0.93081 1.25834 0.94686 0.94383 1.04078 1.70035 1.06891 1.42492 1.37109 0.85427 0.77995 0.78628 0.78833 1.18518 1.20482 1.20109 1.23429 0.89435 0.87625 0.94063 1.20877 1.02176 0.84886 1.05967 1.83965 1.36337 1.13239 1.72322 0.84441 0.88458 0.88789 0.82241 0.91624 0.89139 0.87057 0.89625 0.90576 0.89331 0.94707 0.98199 0.92270 0.87495 0.86889 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.45 113.37 1.18 -0.08 16 2 S -0.03 -0.53 22.74 -56.49 -1.28 -1.82 16 3 C -0.04 -0.82 7.32 67.10 0.49 -0.33 16 4 C -0.15 -4.25 11.01 23.87 0.26 -3.98 16 5 C -0.25 -7.03 6.31 -19.01 -0.12 -7.15 16 6 C 0.54 17.33 7.93 70.19 0.56 17.89 16 7 O -0.52 -15.81 14.09 19.69 0.28 -15.54 16 8 O -0.34 -12.51 9.33 -50.59 -0.47 -12.99 16 9 C 0.08 2.71 2.17 29.85 0.06 2.78 16 10 H 0.12 3.71 6.15 -2.39 -0.01 3.69 16 11 C -0.16 -3.99 9.28 71.98 0.67 -3.32 16 12 C 0.50 22.46 7.10 87.66 0.62 23.08 16 13 O -0.58 -32.64 16.09 15.72 0.25 -32.39 16 14 N -0.60 -25.99 2.86 -851.14 -2.43 -28.43 16 15 C 0.07 1.99 8.92 127.77 1.14 3.13 16 16 C 0.26 14.20 5.16 85.63 0.44 14.64 16 17 C -0.55 -32.06 9.39 25.60 0.24 -31.82 16 18 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 19 C 0.01 0.55 5.46 84.66 0.46 1.02 16 20 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 21 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 C 0.11 2.43 7.37 25.26 0.19 2.62 16 26 C -0.08 -1.17 9.88 71.24 0.70 -0.46 16 27 O -0.16 -3.39 10.19 1.01 0.01 -3.38 16 28 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.16 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.23 5.12 -2.38 -0.01 2.22 16 35 H 0.09 1.95 7.02 -2.39 -0.02 1.93 16 36 H 0.08 2.31 8.07 -2.38 -0.02 2.29 16 37 H 0.09 2.08 6.08 -2.39 -0.01 2.07 16 38 H 0.03 1.88 8.07 -2.39 -0.02 1.86 16 39 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.10 1.69 6.48 -2.39 -0.02 1.67 16 Total: -1.00 -81.13 382.76 6.61 -74.52 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.04 Total: 10.44 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 6.90 Total: 18.00 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.15 Total: -84.47 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: 0.07 Total: -64.29 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -1.28 Total: -1.82 kcal Total: -81.13 6.61 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850228196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.520 kcal (2) G-P(sol) polarization free energy of solvation -81.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds