Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00132 * 2 1 4 4 O 1.20823 * 119.99599 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47239 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47362 * 60.00090 * 6 5 3 8 8 C 1.52996 * 109.47166 * 300.00061 * 6 5 3 9 9 N 1.46505 * 109.47226 * 180.02562 * 6 5 3 10 10 S 1.65597 * 119.99765 * 185.95114 * 9 6 5 11 11 O 1.42099 * 106.40628 * 314.06756 * 10 9 6 12 12 O 1.42101 * 106.40036 * 181.14948 * 10 9 6 13 13 C 1.76197 * 107.21754 * 67.61277 * 10 9 6 14 14 C 1.37638 * 120.12708 * 245.99474 * 13 10 9 15 15 C 1.38621 * 120.24866 * 180.32177 * 14 13 10 16 16 C 1.38654 * 120.49762 * 359.67030 * 15 14 13 17 17 C 1.37597 * 120.25326 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.13093 * 65.69206 * 13 10 9 19 19 C 1.41400 * 120.24132 * 359.97438 * 18 13 10 20 20 H 1.08000 * 119.99920 * 324.85459 * 19 18 13 21 21 C 1.39938 * 119.99931 * 144.85170 * 19 18 13 22 22 N 1.30827 * 120.00302 * 336.76495 * 21 19 18 23 23 Si 1.86806 * 119.99861 * 156.76478 * 21 19 18 24 24 H 1.48497 * 109.47185 * 275.01904 * 23 21 19 25 25 H 1.48492 * 109.46964 * 35.02465 * 23 21 19 26 26 H 1.48501 * 109.46989 * 155.02473 * 23 21 19 27 27 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46839 * 299.99723 * 1 2 3 29 29 H 1.09001 * 109.47247 * 59.99672 * 1 2 3 30 30 H 1.09005 * 109.46990 * 60.00043 * 5 3 2 31 31 H 1.09002 * 109.47410 * 300.00742 * 5 3 2 32 32 H 1.09001 * 109.47740 * 187.36373 * 7 6 5 33 33 H 1.09003 * 109.47032 * 307.36457 * 7 6 5 34 34 H 1.09006 * 109.47119 * 67.36334 * 7 6 5 35 35 H 1.08998 * 109.47679 * 297.63801 * 8 6 5 36 36 H 1.09000 * 109.47180 * 57.63727 * 8 6 5 37 37 H 1.09000 * 109.47609 * 177.63524 * 8 6 5 38 38 H 0.97001 * 119.99569 * 5.95264 * 9 6 5 39 39 H 1.07997 * 119.87919 * 0.02562 * 14 13 10 40 40 H 1.07997 * 119.75241 * 179.69778 * 15 14 13 41 41 H 1.08007 * 119.87315 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.12829 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99623 * 354.14443 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 6 3.4537 3.4348 1.2501 8 6 3.4526 3.4364 -1.2483 9 7 5.4632 2.8187 -0.0010 10 16 6.2155 4.2864 0.1482 11 8 5.5471 5.1721 -0.7395 12 8 7.6117 4.0299 0.0850 13 6 5.8911 4.8755 1.7768 14 6 5.1235 6.0026 1.9636 15 6 4.8723 6.4722 3.2434 16 6 5.3841 5.8101 4.3489 17 6 6.1489 4.6778 4.1863 18 6 6.4104 4.1921 2.8916 19 6 7.1945 3.0291 2.7122 20 1 6.9699 2.3453 1.9069 21 6 8.2616 2.7643 3.5779 22 7 8.8271 3.7423 4.2375 23 14 8.8785 1.0140 3.7917 24 1 8.0589 0.3223 4.8189 25 1 8.7688 0.2893 2.5003 26 1 10.2983 1.0393 4.2262 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6497 4.5052 1.1873 33 1 2.3791 3.2657 1.3187 34 1 3.9430 3.0271 2.1347 35 1 3.8747 2.9698 -2.1383 36 1 2.3668 3.3430 -1.2694 37 1 3.7261 4.4913 -1.2269 38 1 5.9911 2.0097 -0.0892 39 1 4.7194 6.5260 1.1097 40 1 4.2731 7.3601 3.3805 41 1 5.1818 6.1845 5.3416 42 1 6.5462 4.1635 5.0488 43 1 8.5647 4.6598 4.0638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866859778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -142.998421 kcal Electronic energy + Delta-G solvation = -29542.612103 eV Core-core repulsion = 25486.816988 eV Total energy + Delta-G solvation = -4055.795116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80570 -38.09175 -37.67030 -36.37737 -35.92026 -34.88238 -34.03318 -30.87786 -30.31584 -29.60745 -28.98177 -27.07018 -26.82483 -25.29555 -21.99824 -21.71641 -21.26223 -20.00928 -18.52720 -18.21319 -17.71818 -16.94377 -16.65621 -16.31228 -16.24913 -15.45986 -14.88532 -14.45456 -14.29681 -14.11700 -13.74147 -13.63316 -13.60579 -13.36210 -13.21548 -12.72826 -12.37679 -12.27077 -12.04015 -11.84844 -11.66662 -11.56164 -11.41603 -11.21169 -11.11754 -11.09535 -11.07921 -10.88567 -10.59928 -10.51936 -10.50209 -10.43186 -9.99297 -9.84180 -9.53716 -9.20571 -8.89465 -8.14529 -7.77723 -7.42662 -4.81612 1.45956 2.11807 2.20440 2.59750 2.63151 3.07621 3.16135 3.25757 3.84725 3.89602 4.36449 4.52333 4.70649 4.85847 4.91959 4.94681 5.01820 5.09382 5.27072 5.36737 5.50066 5.52629 5.70033 5.74105 5.90265 6.04484 6.08558 6.17967 6.25841 6.31445 6.39540 6.55578 6.60888 6.79864 6.84246 6.89649 7.12419 7.27076 7.34146 7.50345 7.57118 7.61944 7.69256 7.83378 7.97478 8.35029 8.59338 9.85386 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.004958 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.983436 B = 5645.567008 C = 6350.399155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.492 6.492 5 C -0.115 4.115 6 C 0.202 3.798 7 C -0.192 4.192 8 C -0.194 4.194 9 N -1.115 6.115 10 S 2.704 3.296 11 O -0.992 6.992 12 O -0.964 6.964 13 C -0.769 4.769 14 C 0.010 3.990 15 C -0.256 4.256 16 C -0.058 4.058 17 C -0.203 4.203 18 C 0.170 3.830 19 C -0.510 4.510 20 H 0.086 0.914 21 C 0.046 3.954 22 N -0.778 5.778 23 Si 1.066 2.934 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.411 0.589 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 -8.149 -5.030 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.379 6.379 5 C -0.154 4.154 6 C 0.113 3.887 7 C -0.250 4.250 8 C -0.252 4.252 9 N -0.871 5.871 10 S 2.802 3.198 11 O -0.983 6.983 12 O -0.954 6.954 13 C -0.863 4.863 14 C -0.010 4.010 15 C -0.276 4.276 16 C -0.076 4.076 17 C -0.222 4.222 18 C 0.166 3.834 19 C -0.538 4.538 20 H 0.104 0.896 21 C -0.179 4.179 22 N -0.400 5.400 23 Si 0.889 3.111 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.198 1.198 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.244 0.756 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.569 -8.166 -4.849 13.482 hybrid contribution -1.395 0.683 0.026 1.554 sum -10.965 -7.483 -4.822 14.124 Atomic orbital electron populations 1.23248 0.76449 1.03526 1.02620 1.86514 1.23369 1.33659 1.84302 1.23540 0.91998 0.81225 0.72304 1.90598 1.67215 1.35668 1.44433 1.21655 0.87815 0.99334 1.06606 1.19678 0.79322 0.92663 0.97042 1.22856 1.03125 1.02430 0.96552 1.22897 1.02693 1.04045 0.95603 1.55853 1.13254 1.26564 1.91403 1.00999 0.72516 0.71926 0.74397 1.93414 1.76073 1.64535 1.64234 1.93548 1.29827 1.84285 1.87757 1.29961 1.25828 1.11118 1.19431 1.20298 0.91616 0.92389 0.96665 1.20469 1.10577 1.03775 0.92796 1.20841 0.95309 0.94526 0.96967 1.21300 1.04530 0.99476 0.96929 1.16981 0.87239 0.89286 0.89938 1.20784 1.12386 1.06042 1.14557 0.89641 1.27022 0.93481 1.06551 0.90811 1.70410 1.33654 1.03351 1.32557 0.83622 0.77504 0.72283 0.77736 1.19863 1.19564 1.19750 0.88279 0.91811 0.91906 0.87092 0.86582 0.90660 0.89715 0.91103 0.92986 0.89944 0.88516 0.75562 0.87216 0.88512 0.88661 0.87534 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.97 10.57 -39.27 -0.41 -4.38 16 3 C 0.47 5.85 7.31 36.00 0.26 6.11 16 4 O -0.49 -7.18 11.13 -18.75 -0.21 -7.39 16 5 C -0.12 -1.37 5.00 -27.89 -0.14 -1.51 16 6 C 0.20 3.10 0.88 -131.82 -0.12 2.98 16 7 C -0.19 -3.28 6.95 37.16 0.26 -3.02 16 8 C -0.19 -3.03 8.00 37.16 0.30 -2.73 16 9 N -1.11 -18.87 4.72 0.53 0.00 -18.87 16 10 S 2.70 57.92 4.67 -107.50 -0.50 57.42 16 11 O -0.99 -21.77 13.85 -57.17 -0.79 -22.57 16 12 O -0.96 -23.83 16.63 -57.17 -0.95 -24.78 16 13 C -0.77 -17.53 3.75 -38.87 -0.15 -17.67 16 14 C 0.01 0.22 7.54 -39.66 -0.30 -0.08 16 15 C -0.26 -5.34 10.05 -39.29 -0.39 -5.74 16 16 C -0.06 -1.23 10.02 -39.66 -0.40 -1.62 16 17 C -0.20 -4.74 8.07 -38.87 -0.31 -5.05 16 18 C 0.17 4.11 4.84 -106.82 -0.52 3.59 16 19 C -0.51 -12.32 7.32 -37.74 -0.28 -12.59 16 20 H 0.09 1.92 6.15 -52.49 -0.32 1.59 16 21 C 0.05 1.09 4.94 -17.34 -0.09 1.01 16 22 N -0.78 -19.81 12.66 55.55 0.70 -19.11 16 23 Si 1.07 20.36 29.99 -169.99 -5.10 15.26 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.40 4.78 -51.93 -0.25 1.15 16 33 H 0.08 1.38 5.39 -51.93 -0.28 1.10 16 34 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.24 5.47 -51.93 -0.28 0.96 16 37 H 0.10 1.73 5.55 -51.93 -0.29 1.45 16 38 H 0.41 6.00 8.30 -34.47 -0.29 5.71 16 39 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.11 2.53 7.14 -52.49 -0.37 2.15 16 43 H 0.30 7.94 6.94 -40.82 -0.28 7.66 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -30.58 350.44 -8.11 -38.69 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -5.33 Total: 15.43 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: -0.80 Total: -34.98 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.71 Total: -37.97 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -2.37 Total: -59.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Atomic # 16 Polarization: 57.92 SS G_CDS: -0.50 Total: 57.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.58 -8.11 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866859778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.309 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds