Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00132 * 2 1 4 4 O 1.20823 * 119.99599 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00139 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47239 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47362 * 60.00090 * 6 5 3 8 8 C 1.52996 * 109.47166 * 300.00061 * 6 5 3 9 9 N 1.46505 * 109.47226 * 180.02562 * 6 5 3 10 10 S 1.65597 * 119.99765 * 185.95114 * 9 6 5 11 11 O 1.42099 * 106.40628 * 314.06756 * 10 9 6 12 12 O 1.42101 * 106.40036 * 181.14948 * 10 9 6 13 13 C 1.76197 * 107.21754 * 67.61277 * 10 9 6 14 14 C 1.37638 * 120.12708 * 245.99474 * 13 10 9 15 15 C 1.38621 * 120.24866 * 180.32177 * 14 13 10 16 16 C 1.38654 * 120.49762 * 359.67030 * 15 14 13 17 17 C 1.37597 * 120.25326 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.13093 * 65.69206 * 13 10 9 19 19 C 1.41400 * 120.24132 * 359.97438 * 18 13 10 20 20 H 1.08000 * 119.99920 * 324.85459 * 19 18 13 21 21 C 1.39938 * 119.99931 * 144.85170 * 19 18 13 22 22 N 1.30827 * 120.00302 * 336.76495 * 21 19 18 23 23 Si 1.86806 * 119.99861 * 156.76478 * 21 19 18 24 24 H 1.48497 * 109.47185 * 275.01904 * 23 21 19 25 25 H 1.48492 * 109.46964 * 35.02465 * 23 21 19 26 26 H 1.48501 * 109.46989 * 155.02473 * 23 21 19 27 27 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46839 * 299.99723 * 1 2 3 29 29 H 1.09001 * 109.47247 * 59.99672 * 1 2 3 30 30 H 1.09005 * 109.46990 * 60.00043 * 5 3 2 31 31 H 1.09002 * 109.47410 * 300.00742 * 5 3 2 32 32 H 1.09001 * 109.47740 * 187.36373 * 7 6 5 33 33 H 1.09003 * 109.47032 * 307.36457 * 7 6 5 34 34 H 1.09006 * 109.47119 * 67.36334 * 7 6 5 35 35 H 1.08998 * 109.47679 * 297.63801 * 8 6 5 36 36 H 1.09000 * 109.47180 * 57.63727 * 8 6 5 37 37 H 1.09000 * 109.47609 * 177.63524 * 8 6 5 38 38 H 0.97001 * 119.99569 * 5.95264 * 9 6 5 39 39 H 1.07997 * 119.87919 * 0.02562 * 14 13 10 40 40 H 1.07997 * 119.75241 * 179.69778 * 15 14 13 41 41 H 1.08007 * 119.87315 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.12829 * 180.02562 * 17 16 15 43 43 H 0.96996 * 119.99623 * 354.14443 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7420 0.0002 7 6 3.4537 3.4348 1.2501 8 6 3.4526 3.4364 -1.2483 9 7 5.4632 2.8187 -0.0010 10 16 6.2155 4.2864 0.1482 11 8 5.5471 5.1721 -0.7395 12 8 7.6117 4.0299 0.0850 13 6 5.8911 4.8755 1.7768 14 6 5.1235 6.0026 1.9636 15 6 4.8723 6.4722 3.2434 16 6 5.3841 5.8101 4.3489 17 6 6.1489 4.6778 4.1863 18 6 6.4104 4.1921 2.8916 19 6 7.1945 3.0291 2.7122 20 1 6.9699 2.3453 1.9069 21 6 8.2616 2.7643 3.5779 22 7 8.8271 3.7423 4.2375 23 14 8.8785 1.0140 3.7917 24 1 8.0589 0.3223 4.8189 25 1 8.7688 0.2893 2.5003 26 1 10.2983 1.0393 4.2262 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6497 4.5052 1.1873 33 1 2.3791 3.2657 1.3187 34 1 3.9430 3.0271 2.1347 35 1 3.8747 2.9698 -2.1383 36 1 2.3668 3.3430 -1.2694 37 1 3.7261 4.4913 -1.2269 38 1 5.9911 2.0097 -0.0892 39 1 4.7194 6.5260 1.1097 40 1 4.2731 7.3601 3.3805 41 1 5.1818 6.1845 5.3416 42 1 6.5462 4.1635 5.0488 43 1 8.5647 4.6598 4.0638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866859778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -162.974092 kcal Electronic energy + Delta-G solvation = -29543.478313 eV Core-core repulsion = 25486.816988 eV Total energy + Delta-G solvation = -4056.661326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77801 -39.70450 -38.96947 -37.97388 -37.09962 -36.68798 -35.79782 -32.16282 -32.04581 -31.32389 -30.07481 -28.15302 -27.86424 -27.07357 -23.57586 -23.02773 -22.93666 -21.19239 -20.17508 -19.91148 -18.70429 -18.49065 -17.93795 -17.54721 -17.26719 -17.00547 -16.59391 -15.95977 -15.72024 -15.43680 -15.31916 -15.08498 -14.76227 -14.59750 -14.54166 -14.37725 -14.03352 -13.48220 -13.39942 -13.11839 -12.99974 -12.93910 -12.89923 -12.79917 -12.70362 -12.64348 -12.39895 -12.29942 -12.20956 -11.96405 -11.69792 -11.59341 -11.55377 -11.23095 -11.12652 -10.94180 -10.37869 -9.88754 -9.55792 -9.25455 -6.65081 -0.20645 0.43768 0.87726 1.17713 1.53375 1.65714 1.69774 1.79345 2.33996 2.35259 2.63447 2.95581 3.32182 3.47274 3.77432 3.89682 3.91147 4.16869 4.21955 4.31838 4.34461 4.35383 4.38229 4.59054 4.61463 4.63791 4.75356 4.82376 4.84133 4.96329 5.01009 5.09687 5.22267 5.32910 5.35294 5.47351 5.50309 5.59466 5.65170 5.71638 5.85057 6.03059 6.18458 6.24822 6.57475 6.76287 6.82214 7.98908 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.004958 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.983436 B = 5645.567008 C = 6350.399155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.470 3.530 4 O -0.519 6.519 5 C -0.113 4.113 6 C 0.199 3.801 7 C -0.188 4.188 8 C -0.192 4.192 9 N -1.101 6.101 10 S 2.719 3.281 11 O -1.000 7.000 12 O -1.000 7.000 13 C -0.777 4.777 14 C -0.001 4.001 15 C -0.253 4.253 16 C -0.056 4.056 17 C -0.224 4.224 18 C 0.155 3.845 19 C -0.537 4.537 20 H 0.096 0.904 21 C 0.009 3.991 22 N -0.808 5.808 23 Si 1.106 2.894 24 H -0.255 1.255 25 H -0.249 1.249 26 H -0.278 1.278 27 H 0.130 0.870 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.424 0.576 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 -9.938 -5.663 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.408 6.408 5 C -0.152 4.152 6 C 0.111 3.889 7 C -0.246 4.246 8 C -0.250 4.250 9 N -0.861 5.861 10 S 2.816 3.184 11 O -0.990 6.990 12 O -0.991 6.991 13 C -0.871 4.871 14 C -0.021 4.021 15 C -0.273 4.273 16 C -0.075 4.075 17 C -0.244 4.244 18 C 0.151 3.849 19 C -0.565 4.565 20 H 0.114 0.886 21 C -0.209 4.209 22 N -0.430 5.430 23 Si 0.923 3.077 24 H -0.179 1.179 25 H -0.173 1.173 26 H -0.203 1.203 27 H 0.148 0.852 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.260 0.740 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.113 0.887 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.039 -9.957 -5.479 15.843 hybrid contribution -1.143 1.340 0.167 1.769 sum -12.182 -8.617 -5.312 15.839 Atomic orbital electron populations 1.23542 0.74786 1.05609 1.02577 1.86498 1.24961 1.32543 1.83779 1.23556 0.92119 0.81322 0.71583 1.90589 1.67773 1.36585 1.45885 1.21626 0.87858 0.96748 1.08930 1.19759 0.77867 0.95177 0.96075 1.22798 1.03570 1.01305 0.96920 1.22849 1.03256 1.02551 0.96375 1.55429 1.14195 1.25635 1.90840 1.00391 0.71699 0.72612 0.73745 1.93413 1.75931 1.65552 1.64111 1.93498 1.32419 1.85100 1.88040 1.30212 1.25352 1.11531 1.20001 1.20568 0.91585 0.92273 0.97665 1.20866 1.09877 1.04282 0.92233 1.21180 0.94026 0.93603 0.98663 1.21341 1.05798 1.00770 0.96526 1.17232 0.87490 0.89671 0.90537 1.21016 1.13029 1.06757 1.15697 0.88613 1.28390 0.93269 1.09283 0.89923 1.70536 1.35144 1.02737 1.34565 0.83179 0.76872 0.68490 0.79191 1.17934 1.17260 1.20312 0.85189 0.92165 0.91713 0.83934 0.85147 0.92556 0.89005 0.92492 0.91290 0.89303 0.91079 0.73971 0.86118 0.85478 0.85817 0.88738 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.92 10.57 -51.46 -0.54 -7.47 16 3 C 0.47 10.66 7.31 71.23 0.52 11.18 16 4 O -0.52 -14.30 11.13 21.97 0.24 -14.05 16 5 C -0.11 -2.37 5.00 29.84 0.15 -2.22 16 6 C 0.20 5.80 0.88 3.60 0.00 5.81 16 7 C -0.19 -6.31 6.95 71.98 0.50 -5.81 16 8 C -0.19 -5.70 8.00 71.98 0.58 -5.13 16 9 N -1.10 -35.89 4.72 -152.22 -0.72 -36.61 16 10 S 2.72 116.29 4.67 -56.49 -0.26 116.03 16 11 O -1.00 -43.73 13.85 -128.00 -1.77 -45.50 16 12 O -1.00 -49.92 16.63 -128.00 -2.13 -52.05 16 13 C -0.78 -35.69 3.75 22.73 0.09 -35.60 16 14 C 0.00 -0.05 7.54 22.22 0.17 0.11 16 15 C -0.25 -10.23 10.05 22.46 0.23 -10.00 16 16 C -0.06 -2.35 10.02 22.22 0.22 -2.13 16 17 C -0.22 -10.68 8.07 22.73 0.18 -10.50 16 18 C 0.16 7.60 4.84 -21.29 -0.10 7.50 16 19 C -0.54 -26.23 7.32 23.46 0.17 -26.06 16 20 H 0.10 4.28 6.15 -2.91 -0.02 4.26 16 21 C 0.01 0.44 4.94 85.25 0.42 0.86 16 22 N -0.81 -42.42 12.66 21.82 0.28 -42.15 16 23 Si 1.11 40.37 29.99 68.60 2.06 42.43 16 24 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 25 H -0.25 -8.12 7.11 99.48 0.71 -7.42 16 26 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 27 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.08 4.78 -2.39 -0.01 2.07 16 33 H 0.09 2.93 5.39 -2.39 -0.01 2.92 16 34 H 0.06 2.04 7.67 -2.38 -0.02 2.02 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.54 5.47 -2.39 -0.01 2.53 16 37 H 0.07 2.50 5.55 -2.39 -0.01 2.49 16 38 H 0.42 11.59 8.30 -96.74 -0.80 10.79 16 39 H 0.12 4.85 7.32 -2.91 -0.02 4.83 16 40 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.09 4.64 7.14 -2.91 -0.02 4.62 16 43 H 0.28 15.61 6.94 -92.71 -0.64 14.96 16 Total: -1.00 -67.35 350.44 1.85 -65.50 By element: Atomic # 1 Polarization: 43.89 SS G_CDS: 0.38 Total: 44.28 kcal Atomic # 6 Polarization: -74.72 SS G_CDS: 4.32 Total: -70.40 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -0.44 Total: -78.76 kcal Atomic # 8 Polarization: -114.87 SS G_CDS: -4.20 Total: -119.07 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.06 Total: 42.43 kcal Atomic # 16 Polarization: 116.29 SS G_CDS: -0.26 Total: 116.03 kcal Total: -67.35 1.85 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866859778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.477 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds