Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46656 * 2 1 4 4 C 1.53001 * 109.46922 * 174.85870 * 3 2 1 5 5 H 1.09003 * 109.47379 * 59.83096 * 4 3 2 6 6 N 1.46503 * 109.46910 * 299.83649 * 4 3 2 7 7 S 1.65600 * 120.00107 * 124.77713 * 6 4 3 8 8 O 1.42101 * 106.40463 * 178.47934 * 7 6 4 9 9 O 1.42104 * 106.39986 * 311.39740 * 7 6 4 10 10 C 1.76190 * 107.22067 * 64.93528 * 7 6 4 11 11 C 1.37635 * 120.13015 * 243.11666 * 10 7 6 12 12 C 1.38621 * 120.25121 * 180.02562 * 11 10 7 13 13 C 1.38656 * 120.49710 * 359.97438 * 12 11 10 14 14 C 1.37594 * 120.25292 * 0.02562 * 13 12 11 15 15 C 1.40705 * 120.12579 * 62.84535 * 10 7 6 16 16 C 1.41390 * 120.24471 * 359.97438 * 15 10 7 17 17 H 1.08009 * 119.99727 * 330.75649 * 16 15 10 18 18 C 1.39944 * 120.00315 * 150.75892 * 16 15 10 19 19 N 1.30817 * 119.99633 * 344.68853 * 18 16 15 20 20 Si 1.86797 * 119.99992 * 164.68709 * 18 16 15 21 21 H 1.48504 * 109.47293 * 60.00410 * 20 18 16 22 22 H 1.48506 * 109.47028 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47281 * 299.99931 * 20 18 16 24 24 C 1.50701 * 109.47341 * 179.83646 * 4 3 2 25 25 O 1.20820 * 120.00066 * 119.99831 * 24 4 3 26 26 O 1.34227 * 119.99887 * 299.99975 * 24 4 3 27 27 C 1.45197 * 116.99952 * 179.97438 * 26 24 4 28 28 H 1.09001 * 109.47659 * 60.00069 * 1 2 3 29 29 H 1.09000 * 109.46655 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47193 * 299.99808 * 1 2 3 31 31 H 1.08999 * 109.46789 * 240.00485 * 2 1 3 32 32 H 1.08992 * 109.47491 * 120.00073 * 2 1 3 33 33 H 1.08995 * 109.47153 * 54.86037 * 3 2 1 34 34 H 1.09003 * 109.47061 * 294.85107 * 3 2 1 35 35 H 0.97001 * 119.99909 * 304.77195 * 6 4 3 36 36 H 1.08001 * 119.87733 * 0.02562 * 11 10 7 37 37 H 1.07999 * 119.74960 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.87251 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.13375 * 179.97438 * 14 13 12 40 40 H 0.97005 * 119.99919 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.47098 * 59.99835 * 27 26 24 42 42 H 1.09003 * 109.47101 * 179.97438 * 27 26 24 43 43 H 1.09004 * 109.47091 * 299.99933 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5645 1.4446 0.1293 5 1 4.0010 0.9023 -0.7095 6 7 3.9489 0.7941 1.3844 7 16 5.0031 -0.4829 1.3662 8 8 5.1985 -0.8614 2.7218 9 8 4.5308 -1.3789 0.3694 10 6 6.5527 0.1281 0.7919 11 6 7.0887 -0.3446 -0.3844 12 6 8.3080 0.1340 -0.8382 13 6 9.0008 1.0929 -0.1150 14 6 8.4841 1.5798 1.0636 15 6 7.2443 1.1053 1.5311 16 6 6.7004 1.6029 2.7377 17 1 5.6296 1.6330 2.8754 18 6 7.5496 2.0565 3.7534 19 7 8.8219 1.7535 3.7262 20 14 6.8662 3.0944 5.1481 21 1 5.8209 2.3260 5.8708 22 1 7.9619 3.4448 6.0872 23 1 6.2726 4.3380 4.5947 24 6 4.0671 2.8653 0.1252 25 8 4.6833 3.2908 1.0734 26 8 3.8303 3.6579 -0.9318 27 6 4.3436 5.0146 -0.8664 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6033 1.9822 0.8403 34 1 1.7538 1.9290 -0.9325 35 1 3.5860 1.1114 2.2261 36 1 6.5574 -1.0912 -0.9560 37 1 8.7212 -0.2429 -1.7621 38 1 9.9502 1.4583 -0.4778 39 1 9.0256 2.3264 1.6255 40 1 9.4104 2.0676 4.4304 41 1 5.4278 4.9880 -0.7573 42 1 4.0838 5.5458 -1.7821 43 1 3.9048 5.5283 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867053258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -171.750200 kcal Electronic energy + Delta-G solvation = -29622.564510 eV Core-core repulsion = 25565.522624 eV Total energy + Delta-G solvation = -4057.041886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48601 -39.36363 -38.27231 -37.88063 -37.05971 -36.68852 -35.67077 -34.10248 -32.01579 -31.39105 -30.38124 -28.28355 -27.33058 -25.49853 -23.44764 -22.96341 -22.13219 -21.85670 -20.52353 -19.52031 -18.88933 -18.31898 -18.09570 -17.73696 -17.20172 -17.07457 -16.62254 -16.06834 -16.04231 -15.61315 -15.12695 -14.92189 -14.69950 -14.58436 -14.47371 -13.95838 -13.74971 -13.58647 -13.30063 -13.08905 -13.01987 -12.96460 -12.87958 -12.85576 -12.77875 -12.60824 -12.48067 -12.19526 -12.18862 -11.97315 -11.69731 -11.66762 -11.65068 -11.41708 -11.16871 -11.11810 -10.40950 -9.84757 -9.42673 -8.83154 -6.55861 -0.24627 0.52905 0.97323 1.27303 1.30931 1.41823 1.49900 1.67835 2.13539 2.30025 2.62175 2.96019 3.44669 3.58511 3.77641 3.88882 3.95153 4.20699 4.33019 4.33339 4.36888 4.38890 4.48105 4.51446 4.70660 4.73109 4.74507 4.93542 4.97925 5.00820 5.07003 5.13043 5.30313 5.35757 5.42859 5.43929 5.53908 5.57848 5.70118 5.81346 5.99755 6.02623 6.11329 6.49322 6.69335 6.84623 6.84983 8.14758 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009847 B = 0.005749 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.769751 B = 4869.217368 C = 5175.792616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.109 4.109 4 C 0.169 3.831 5 H 0.128 0.872 6 N -1.090 6.090 7 S 2.719 3.281 8 O -0.997 6.997 9 O -0.989 6.989 10 C -0.804 4.804 11 C -0.014 4.014 12 C -0.254 4.254 13 C -0.077 4.077 14 C -0.188 4.188 15 C 0.171 3.829 16 C -0.454 4.454 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.806 5.806 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.257 1.257 24 C 0.437 3.563 25 O -0.501 6.501 26 O -0.358 6.358 27 C 0.030 3.970 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.423 0.577 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.294 0.706 41 H 0.045 0.955 42 H 0.137 0.863 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 5.309 -7.965 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.148 4.148 4 C 0.059 3.941 5 H 0.145 0.855 6 N -0.847 5.847 7 S 2.815 3.185 8 O -0.987 6.987 9 O -0.979 6.979 10 C -0.898 4.898 11 C -0.033 4.033 12 C -0.274 4.274 13 C -0.096 4.096 14 C -0.208 4.208 15 C 0.166 3.834 16 C -0.482 4.482 17 H 0.112 0.888 18 C -0.180 4.180 19 N -0.430 5.430 20 Si 0.789 3.211 21 H -0.181 1.181 22 H -0.184 1.184 23 H -0.181 1.181 24 C 0.277 3.723 25 O -0.387 6.387 26 O -0.274 6.274 27 C -0.063 4.063 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.259 0.741 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.155 0.845 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.052 4.556 -7.450 14.883 hybrid contribution 1.089 1.232 1.059 1.955 sum -10.963 5.787 -6.391 13.948 Atomic orbital electron populations 1.21736 0.93890 1.02150 1.02606 1.21566 0.97247 0.95413 1.02549 1.21923 0.88531 0.99108 1.05264 1.20449 0.99495 0.86541 0.87579 0.85464 1.55379 1.62642 1.52427 1.14286 1.00526 0.73048 0.72560 0.72320 1.93501 1.86424 1.81927 1.36856 1.93457 1.80968 1.61934 1.61562 1.30192 1.26505 1.20149 1.12965 1.20616 0.95110 0.95149 0.92458 1.20864 0.98145 1.05195 1.03166 1.21215 0.98312 0.95778 0.94258 1.21449 0.98846 1.03525 0.96973 1.17195 0.90747 0.85530 0.89900 1.20055 0.95779 1.34261 0.98129 0.88837 1.26759 0.94594 0.94620 1.01986 1.69835 1.06142 1.33993 1.32994 0.85431 0.79560 0.79104 0.76995 1.18106 1.18424 1.18102 1.24601 0.77158 0.89833 0.80701 1.90796 1.36565 1.75143 1.36189 1.86457 1.72469 1.25809 1.42681 1.23473 0.99030 0.78664 1.05130 0.91239 0.92517 0.92321 0.91312 0.93282 0.89848 0.87085 0.74062 0.85358 0.85355 0.86244 0.87871 0.89488 0.93611 0.84542 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.83 5.85 30.60 0.18 -2.65 16 3 C -0.11 -2.26 4.86 30.60 0.15 -2.11 16 4 C 0.17 4.92 2.88 44.25 0.13 5.04 16 5 H 0.13 3.63 7.60 -2.39 -0.02 3.61 16 6 N -1.09 -37.86 3.02 -172.51 -0.52 -38.38 16 7 S 2.72 117.91 4.84 -56.49 -0.27 117.64 16 8 O -1.00 -50.72 16.77 -128.00 -2.15 -52.87 16 9 O -0.99 -41.49 16.48 -128.00 -2.11 -43.60 16 10 C -0.80 -39.05 5.93 22.73 0.13 -38.92 16 11 C -0.01 -0.61 9.53 22.22 0.21 -0.40 16 12 C -0.25 -10.79 10.05 22.46 0.23 -10.56 16 13 C -0.08 -3.48 10.02 22.22 0.22 -3.26 16 14 C -0.19 -9.78 8.66 22.73 0.20 -9.59 16 15 C 0.17 9.10 5.53 -21.29 -0.12 8.98 16 16 C -0.45 -24.18 7.17 23.46 0.17 -24.01 16 17 H 0.09 4.75 5.33 -2.91 -0.02 4.73 16 18 C 0.04 1.97 5.16 85.26 0.44 2.41 16 19 N -0.81 -42.14 11.12 21.83 0.24 -41.89 16 20 Si 0.97 39.48 29.59 68.60 2.03 41.51 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C 0.44 14.08 7.32 71.24 0.52 14.61 16 25 O -0.50 -20.06 15.34 21.98 0.34 -19.72 16 26 O -0.36 -9.54 10.46 -51.39 -0.54 -10.07 16 27 C 0.03 0.67 10.56 113.37 1.20 1.87 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.25 7.45 -2.39 -0.02 1.23 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.79 8.11 -2.39 -0.02 1.77 16 35 H 0.42 13.67 8.62 -96.74 -0.83 12.84 16 36 H 0.13 5.06 7.33 -2.91 -0.02 5.04 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.10 5.55 6.41 -2.91 -0.02 5.54 16 40 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 41 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 42 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 Total: -1.00 -70.55 372.76 1.59 -68.96 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.20 Total: 38.72 kcal Atomic # 6 Polarization: -64.65 SS G_CDS: 4.37 Total: -60.28 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -0.28 Total: -80.27 kcal Atomic # 8 Polarization: -121.81 SS G_CDS: -4.46 Total: -126.27 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 16 Polarization: 117.91 SS G_CDS: -0.27 Total: 117.64 kcal Total: -70.55 1.59 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867053258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.794 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds